Wall clock time and date at job start Mon Mar 30 2020 01:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38366 * 119.92736 * 2 1 4 4 C 1.38323 * 120.28575 * 179.97438 * 3 2 1 5 5 C 1.38000 * 120.14128 * 0.02562 * 4 3 2 6 6 C 1.39513 * 119.85498 * 0.28804 * 5 4 3 7 7 C 1.47806 * 120.14193 * 179.70083 * 6 5 4 8 8 C 1.31478 * 118.66523 * 114.99697 * 7 6 5 9 9 C 1.50167 * 123.05984 * 180.32134 * 8 7 6 10 10 N 1.46839 * 110.25024 * 342.91599 * 9 8 7 11 11 C 1.46905 * 110.99992 * 174.61232 * 10 9 8 12 12 C 1.53003 * 109.46994 * 66.04729 * 11 10 9 13 13 C 1.50701 * 109.46700 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00524 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99494 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99810 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00474 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47232 * 89.99915 * 17 15 13 19 19 H 1.48495 * 109.47411 * 210.00177 * 17 15 13 20 20 H 1.48506 * 109.47058 * 330.00486 * 17 15 13 21 21 C 1.47213 * 110.26184 * 51.18221 * 10 9 8 22 22 C 1.50339 * 118.65818 * 294.72375 * 7 6 5 23 23 C 1.37945 * 119.92994 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.46780 * 90.00173 * 1 2 3 25 25 H 1.08995 * 109.47386 * 210.00156 * 1 2 3 26 26 H 1.09002 * 109.46882 * 330.00975 * 1 2 3 27 27 H 1.07999 * 119.85945 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.93093 * 179.97438 * 4 3 2 29 29 H 1.08002 * 120.06975 * 180.02562 * 5 4 3 30 30 H 1.08003 * 118.46557 * 0.28980 * 8 7 6 31 31 H 1.08988 * 109.34425 * 103.15863 * 9 8 7 32 32 H 1.08999 * 109.33785 * 222.84142 * 9 8 7 33 33 H 1.08990 * 109.47028 * 186.05022 * 11 10 9 34 34 H 1.08999 * 109.46852 * 306.05094 * 11 10 9 35 35 H 1.09001 * 109.47020 * 300.00006 * 12 11 10 36 36 H 1.08993 * 109.47322 * 60.00187 * 12 11 10 37 37 H 0.96989 * 120.00190 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.62762 * 50.42295 * 21 10 9 39 39 H 1.09004 * 109.62397 * 170.99806 * 21 10 9 40 40 H 1.08998 * 109.43444 * 283.56649 * 22 7 6 41 41 H 1.09004 * 109.42883 * 43.42763 * 22 7 6 42 42 H 1.08003 * 120.07242 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5806 1.2078 0.0005 5 6 4.2810 0.0188 0.0005 6 6 3.5909 -1.1937 -0.0061 7 6 4.3347 -2.4710 -0.0128 8 6 4.2306 -3.2669 1.0285 9 6 4.9476 -4.5826 1.1289 10 7 5.4083 -5.0128 -0.1973 11 6 6.2215 -6.2325 -0.1021 12 6 5.3458 -7.3935 0.3734 13 6 6.1802 -8.6446 0.4717 14 1 7.2300 -8.6147 0.2198 15 6 5.6031 -9.8276 0.8821 16 7 6.3312 -10.9195 0.9675 17 14 3.7873 -9.8795 1.3170 18 1 2.9964 -10.2036 0.1026 19 1 3.5554 -10.9199 2.3509 20 1 3.3662 -8.5562 1.8432 21 6 6.1579 -3.9287 -0.8531 22 6 5.1745 -2.8100 -1.2128 23 6 2.1953 -1.1955 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 1.6539 2.1324 -0.0004 28 1 4.1136 2.1471 0.0001 29 1 5.3610 0.0269 0.0014 30 1 3.6005 -2.9599 1.8502 31 1 5.8058 -4.4764 1.7922 32 1 4.2690 -5.3334 1.5338 33 1 6.6381 -6.4688 -1.0811 34 1 7.0322 -6.0740 0.6091 35 1 4.9292 -7.1572 1.3525 36 1 4.5351 -7.5521 -0.3377 37 1 5.9254 -11.7517 1.2566 38 1 6.9196 -3.5471 -0.1733 39 1 6.6291 -4.3063 -1.7606 40 1 4.5282 -3.1385 -2.0267 41 1 5.7315 -1.9271 -1.5266 42 1 1.6553 -2.1308 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092821852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:07 Heat of formation + Delta-G solvation = 27.854564 kcal Electronic energy + Delta-G solvation = -19832.447109 eV Core-core repulsion = 16969.637257 eV Total energy + Delta-G solvation = -2862.809852 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.78991 -38.43084 -34.87397 -33.03774 -32.48230 -31.09260 -30.46119 -29.11357 -27.06099 -25.43514 -23.60589 -23.01025 -21.91003 -20.98220 -20.03090 -17.62996 -17.02011 -16.60358 -15.73799 -15.42003 -15.07046 -14.43059 -14.29872 -14.01405 -13.88606 -13.62532 -13.32460 -13.18889 -12.96568 -12.57190 -12.49394 -12.31727 -11.96816 -11.91754 -11.64338 -11.47717 -11.25554 -10.96928 -10.88517 -10.40948 -10.10262 -9.73100 -9.65042 -9.19502 -9.14627 -8.88246 -8.52447 -8.41297 -7.84775 -6.03428 -4.01514 1.10540 1.25025 2.25500 3.33774 3.40557 3.45223 3.60537 4.35405 4.47269 4.53072 4.65780 4.74982 4.96150 4.99372 5.13502 5.26135 5.31069 5.34235 5.36830 5.42228 5.49012 5.53365 5.60665 5.65983 5.80412 5.85784 5.94671 5.99053 6.09574 6.14567 6.24083 6.26066 6.35508 6.40137 6.46071 6.57837 6.76731 6.85388 6.96433 7.18532 7.32740 7.58108 7.63300 7.86479 8.54058 9.00736 9.59183 11.10003 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.028330 B = 0.003539 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.114763 B = 7910.582189 C = 8660.141807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.128 4.128 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.036 4.036 7 C -0.094 4.094 8 C -0.130 4.130 9 C 0.081 3.919 10 N -0.536 5.536 11 C 0.069 3.931 12 C -0.008 4.008 13 C -0.521 4.521 14 H 0.071 0.929 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.882 3.118 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.265 1.265 21 C 0.051 3.949 22 C -0.068 4.068 23 C -0.110 4.110 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.027 0.973 35 H 0.015 0.985 36 H 0.021 0.979 37 H 0.263 0.737 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 24.844 -1.993 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.135 4.135 5 C -0.135 4.135 6 C -0.036 4.036 7 C -0.094 4.094 8 C -0.149 4.149 9 C -0.047 4.047 10 N -0.261 5.261 11 C -0.057 4.057 12 C -0.045 4.045 13 C -0.560 4.560 14 H 0.089 0.911 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.077 4.077 22 C -0.106 4.106 23 C -0.128 4.128 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.126 0.874 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.033 0.967 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.349 24.537 -2.235 26.015 hybrid contribution -0.199 0.016 0.790 0.814 sum -8.547 24.554 -1.445 26.039 Atomic orbital electron populations 1.20798 0.91240 1.02737 1.02343 1.19862 0.96042 0.93088 0.99714 1.21032 0.94275 0.97324 1.01956 1.21043 0.94220 0.97873 1.00351 1.21224 0.99792 0.91618 1.00839 1.19074 0.92914 0.93011 0.98579 1.19698 0.99850 0.93011 0.96849 1.22637 0.99454 0.94998 0.97768 1.21009 0.98608 0.94110 0.90946 1.62524 1.40052 1.04374 1.19130 1.22179 0.94568 0.88539 1.00454 1.19566 0.95951 0.93028 0.95978 1.21090 0.97544 0.92049 1.45280 0.91133 1.25001 0.97978 0.95487 0.94936 1.69915 1.36210 1.00126 1.48103 0.86745 0.85874 0.77969 0.78501 1.20224 1.21507 1.18988 1.22190 0.94395 0.92048 0.99112 1.20452 0.96829 0.97537 0.95736 1.21237 0.93206 0.97694 1.00640 0.91182 0.91455 0.91662 0.86390 0.86164 0.86103 0.87376 0.93638 0.88953 0.91310 0.95479 0.96675 0.96116 0.92738 0.94929 0.90476 0.90210 0.91308 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.09 -0.88 5.87 -104.68 -0.61 -1.49 16 3 C -0.13 -1.20 9.69 -39.50 -0.38 -1.58 16 4 C -0.12 -1.11 10.03 -39.64 -0.40 -1.50 16 5 C -0.12 -1.25 9.67 -39.19 -0.38 -1.63 16 6 C -0.04 -0.43 5.17 -105.02 -0.54 -0.97 16 7 C -0.09 -1.24 5.30 -102.72 -0.54 -1.78 16 8 C -0.13 -1.83 9.50 -36.40 -0.35 -2.17 16 9 C 0.08 1.31 5.26 -5.27 -0.03 1.29 16 10 N -0.54 -9.40 4.71 -236.04 -1.11 -10.51 16 11 C 0.07 1.41 4.89 -3.82 -0.02 1.39 16 12 C -0.01 -0.18 3.96 -27.88 -0.11 -0.29 16 13 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 14 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 17 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 20 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 21 C 0.05 0.73 5.59 -3.53 -0.02 0.71 16 22 C -0.07 -0.87 6.02 -27.94 -0.17 -1.04 16 23 C -0.11 -1.27 9.33 -39.20 -0.37 -1.63 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 27 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 28 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.11 1.39 7.98 -52.48 -0.42 0.97 16 31 H 0.05 0.73 8.06 -51.94 -0.42 0.32 16 32 H 0.09 1.61 6.71 -51.93 -0.35 1.26 16 33 H 0.07 1.39 7.93 -51.93 -0.41 0.98 16 34 H 0.03 0.55 8.06 -51.93 -0.42 0.14 16 35 H 0.02 0.36 5.72 -51.93 -0.30 0.07 16 36 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.03 0.46 8.07 -51.93 -0.42 0.04 16 39 H 0.08 1.06 7.91 -51.93 -0.41 0.65 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 42 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -31.11 339.36 -10.80 -41.91 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.92 Total: -1.91 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -3.99 Total: -24.64 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: -0.34 Total: -37.84 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.11 -10.80 -41.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092821852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.762 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds