Wall clock time and date at job start Mon Mar 30 2020 01:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38344 * 119.85452 * 269.72557 * 3 2 1 5 5 C 1.37975 * 120.14112 * 179.72214 * 4 3 2 6 6 C 1.39540 * 119.85408 * 0.56887 * 5 4 3 7 7 C 1.47806 * 120.13778 * 179.72463 * 6 5 4 8 8 C 1.31479 * 118.66090 * 244.70930 * 7 6 5 9 9 C 1.50173 * 123.05716 * 180.11596 * 8 7 6 10 10 N 1.46831 * 110.30537 * 343.37387 * 9 8 7 11 11 C 1.46897 * 111.00108 * 287.55403 * 10 9 8 12 12 C 1.50706 * 109.47146 * 293.01154 * 11 10 9 13 13 H 1.08004 * 119.99947 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00245 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99691 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00202 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47175 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47424 * 119.99756 * 16 14 12 19 19 H 1.48509 * 109.47161 * 239.99953 * 16 14 12 20 20 C 1.47210 * 110.26504 * 50.98772 * 10 9 8 21 21 C 1.50333 * 118.65944 * 64.98427 * 7 6 5 22 22 C 1.39532 * 119.71556 * 359.70749 * 6 5 4 23 23 C 1.37973 * 119.85897 * 359.97438 * 22 6 5 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 29 29 H 1.07999 * 119.92881 * 359.97438 * 4 3 2 30 30 H 1.08005 * 120.07189 * 180.25423 * 5 4 3 31 31 H 1.07994 * 118.46587 * 0.34039 * 8 7 6 32 32 H 1.08994 * 109.46565 * 223.01551 * 9 8 7 33 33 H 1.09001 * 109.15450 * 103.53165 * 9 8 7 34 34 H 1.08999 * 109.47398 * 53.00624 * 11 10 9 35 35 H 1.09001 * 109.47149 * 173.01315 * 11 10 9 36 36 H 0.97003 * 119.99796 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.62737 * 170.99822 * 20 10 9 38 38 H 1.09002 * 109.79176 * 50.51169 * 20 10 9 39 39 H 1.08996 * 109.43241 * 283.51212 * 21 7 6 40 40 H 1.09003 * 109.43555 * 43.41772 * 21 7 6 41 41 H 1.08001 * 120.07134 * 180.02562 * 22 6 5 42 42 H 1.07999 * 119.92771 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2673 2.0682 -1.1998 5 6 2.7219 3.3710 -1.2068 6 6 2.9558 4.0315 -0.0001 7 6 3.4485 5.4250 -0.0002 8 6 4.6423 5.6718 0.4923 9 6 5.2386 7.0491 0.5436 10 7 4.5109 7.9532 -0.3558 11 6 4.8116 7.6517 -1.7617 12 6 6.2546 7.9786 -2.0480 13 1 6.8851 8.3715 -1.2641 14 6 6.7696 7.7771 -3.3110 15 7 6.0017 7.2991 -4.2657 16 14 8.5581 8.1829 -3.6661 17 1 9.2019 8.7030 -2.4330 18 1 9.2646 6.9561 -4.1142 19 1 8.6294 9.2131 -4.7334 20 6 3.0638 7.8740 -0.0970 21 6 2.5616 6.5032 -0.5577 22 6 2.7222 3.3709 1.2066 23 6 2.2615 2.0704 1.1998 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0908 1.5542 -2.1331 30 1 2.9010 3.8766 -2.1441 31 1 5.2225 4.8450 0.8745 32 1 6.2846 7.0036 0.2409 33 1 5.1767 7.4278 1.5639 34 1 4.6342 6.5932 -1.9523 35 1 4.1685 8.2499 -2.4072 36 1 6.3639 7.1577 -5.1544 37 1 2.5491 8.6580 -0.6524 38 1 2.8724 7.9946 0.9693 39 1 2.5772 6.4586 -1.6466 40 1 1.5418 6.3534 -0.2032 41 1 2.9010 3.8768 2.1439 42 1 2.0799 1.5582 2.1331 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093263045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:32 Heat of formation + Delta-G solvation = 27.081033 kcal Electronic energy + Delta-G solvation = -20334.615428 eV Core-core repulsion = 17471.772032 eV Total energy + Delta-G solvation = -2862.843395 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.63280 -38.34404 -34.69560 -32.90576 -31.77653 -30.86361 -30.23246 -28.74592 -27.01308 -24.40026 -23.25665 -22.96886 -22.18788 -21.29046 -20.24953 -17.44013 -16.34920 -16.12150 -15.40432 -15.38984 -14.52669 -14.22897 -14.17373 -13.86708 -13.67895 -13.54124 -13.24432 -13.17616 -12.88660 -12.32455 -12.12716 -11.91946 -11.66623 -11.52953 -11.33135 -11.09191 -10.98867 -10.80374 -10.72974 -10.51389 -10.39549 -10.28905 -9.74411 -9.13937 -8.80431 -8.67449 -8.40471 -7.98523 -7.20253 -5.99624 -4.00032 1.37651 1.55594 2.63584 3.32425 3.39871 3.44548 3.87904 4.45251 4.70062 4.80826 4.88360 5.11223 5.15553 5.21864 5.28034 5.36967 5.40919 5.43072 5.59618 5.60235 5.68690 5.73074 5.82054 5.90649 5.92004 6.02191 6.05949 6.18152 6.21425 6.28742 6.39668 6.48734 6.49824 6.62460 6.69931 6.78714 7.02609 7.17310 7.31026 7.35662 7.47435 7.82823 8.11891 8.24847 8.58684 9.07469 9.63599 11.11269 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022687 B = 0.004278 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.880332 B = 6543.188713 C = 7142.543578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.117 4.117 5 C -0.103 4.103 6 C -0.037 4.037 7 C -0.100 4.100 8 C -0.152 4.152 9 C 0.086 3.914 10 N -0.529 5.529 11 C 0.188 3.812 12 C -0.506 4.506 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.284 1.284 20 C 0.054 3.946 21 C -0.109 4.109 22 C -0.111 4.111 23 C -0.120 4.120 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.003 0.997 35 H 0.026 0.974 36 H 0.259 0.741 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.120 0.880 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.738 -11.455 9.846 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.135 4.135 5 C -0.121 4.121 6 C -0.037 4.037 7 C -0.100 4.100 8 C -0.172 4.172 9 C -0.042 4.042 10 N -0.251 5.251 11 C 0.063 3.937 12 C -0.544 4.544 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.075 4.075 21 C -0.148 4.148 22 C -0.129 4.129 23 C -0.138 4.138 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.021 0.979 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.138 0.862 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.566 -10.993 9.744 17.530 hybrid contribution 0.719 -0.799 -0.626 1.244 sum -8.847 -11.791 9.118 17.333 Atomic orbital electron populations 1.21747 0.94932 1.01400 1.02253 1.20513 0.96028 0.92936 1.02551 1.19866 1.00189 0.96128 0.93245 1.20940 1.00290 0.94890 0.97338 1.21359 0.98275 0.94466 0.97991 1.19116 0.97974 0.93713 0.92914 1.19592 0.96201 0.91805 1.02388 1.23304 0.95145 1.00060 0.98648 1.21039 0.99786 0.86826 0.96555 1.62791 1.04204 1.50033 1.08110 1.19776 0.96805 0.95336 0.81764 1.21217 0.95481 1.42008 0.95732 0.91952 1.24966 0.97896 0.95470 0.96238 1.69971 1.35634 1.45761 1.02412 0.86491 0.85024 0.77900 0.78308 1.19662 1.21185 1.21059 1.22178 0.90774 0.94528 0.99980 1.20960 0.97524 0.94860 1.01440 1.21234 0.99794 0.94573 0.97288 1.20867 1.00868 0.94879 0.97217 0.92632 0.92529 0.92635 0.91321 0.91222 0.86325 0.85712 0.88287 0.88692 0.91398 0.97938 0.95565 0.93101 0.91061 0.92024 0.90364 0.91897 0.86245 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.08 -0.78 6.06 -27.88 -0.17 -0.95 16 3 C -0.09 -1.16 5.14 -104.54 -0.54 -1.69 16 4 C -0.12 -1.58 9.68 -39.64 -0.38 -1.97 16 5 C -0.10 -1.64 9.75 -39.19 -0.38 -2.02 16 6 C -0.04 -0.60 5.17 -105.02 -0.54 -1.14 16 7 C -0.10 -1.76 4.64 -102.72 -0.48 -2.24 16 8 C -0.15 -2.77 8.95 -36.40 -0.33 -3.10 16 9 C 0.09 1.68 5.81 -5.27 -0.03 1.65 16 10 N -0.53 -11.48 5.01 -237.58 -1.19 -12.67 16 11 C 0.19 4.88 3.78 -4.97 -0.02 4.86 16 12 C -0.51 -14.23 8.35 -34.44 -0.29 -14.51 16 13 H 0.06 1.74 7.27 -52.48 -0.38 1.36 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 C 0.05 0.98 6.01 -3.61 -0.02 0.96 16 21 C -0.11 -1.92 5.22 -28.02 -0.15 -2.07 16 22 C -0.11 -1.55 9.68 -39.20 -0.38 -1.93 16 23 C -0.12 -1.49 9.68 -39.64 -0.38 -1.88 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.12 2.10 8.06 -52.48 -0.42 1.67 16 31 H 0.10 1.69 7.98 -52.49 -0.42 1.28 16 32 H 0.09 2.01 6.68 -51.93 -0.35 1.66 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.00 0.08 6.03 -51.93 -0.31 -0.24 16 35 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 39 H 0.08 1.53 7.14 -51.93 -0.37 1.16 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -30.09 339.22 -11.05 -41.14 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.87 Total: 1.08 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -3.81 Total: -25.40 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.45 Total: -38.67 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.09 -11.05 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093263045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.221 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds