Wall clock time and date at job start Mon Mar 30 2020 01:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38344 * 119.85452 * 269.72557 * 3 2 1 5 5 C 1.37975 * 120.14112 * 179.72214 * 4 3 2 6 6 C 1.39540 * 119.85408 * 0.56887 * 5 4 3 7 7 C 1.47806 * 120.13778 * 179.72463 * 6 5 4 8 8 C 1.31479 * 118.66090 * 244.70930 * 7 6 5 9 9 C 1.50173 * 123.05716 * 180.11596 * 8 7 6 10 10 N 1.46831 * 110.30537 * 343.37387 * 9 8 7 11 11 C 1.46897 * 111.00108 * 287.55403 * 10 9 8 12 12 C 1.50706 * 109.47146 * 293.01154 * 11 10 9 13 13 H 1.08004 * 119.99947 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00245 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99691 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00202 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47175 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47424 * 119.99756 * 16 14 12 19 19 H 1.48509 * 109.47161 * 239.99953 * 16 14 12 20 20 C 1.47210 * 110.26504 * 50.98772 * 10 9 8 21 21 C 1.50333 * 118.65944 * 64.98427 * 7 6 5 22 22 C 1.39532 * 119.71556 * 359.70749 * 6 5 4 23 23 C 1.37973 * 119.85897 * 359.97438 * 22 6 5 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 29 29 H 1.07999 * 119.92881 * 359.97438 * 4 3 2 30 30 H 1.08005 * 120.07189 * 180.25423 * 5 4 3 31 31 H 1.07994 * 118.46587 * 0.34039 * 8 7 6 32 32 H 1.08994 * 109.46565 * 223.01551 * 9 8 7 33 33 H 1.09001 * 109.15450 * 103.53165 * 9 8 7 34 34 H 1.08999 * 109.47398 * 53.00624 * 11 10 9 35 35 H 1.09001 * 109.47149 * 173.01315 * 11 10 9 36 36 H 0.97003 * 119.99796 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.62737 * 170.99822 * 20 10 9 38 38 H 1.09002 * 109.79176 * 50.51169 * 20 10 9 39 39 H 1.08996 * 109.43241 * 283.51212 * 21 7 6 40 40 H 1.09003 * 109.43555 * 43.41772 * 21 7 6 41 41 H 1.08001 * 120.07134 * 180.02562 * 22 6 5 42 42 H 1.07999 * 119.92771 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2673 2.0682 -1.1998 5 6 2.7219 3.3710 -1.2068 6 6 2.9558 4.0315 -0.0001 7 6 3.4485 5.4250 -0.0002 8 6 4.6423 5.6718 0.4923 9 6 5.2386 7.0491 0.5436 10 7 4.5109 7.9532 -0.3558 11 6 4.8116 7.6517 -1.7617 12 6 6.2546 7.9786 -2.0480 13 1 6.8851 8.3715 -1.2641 14 6 6.7696 7.7771 -3.3110 15 7 6.0017 7.2991 -4.2657 16 14 8.5581 8.1829 -3.6661 17 1 9.2019 8.7030 -2.4330 18 1 9.2646 6.9561 -4.1142 19 1 8.6294 9.2131 -4.7334 20 6 3.0638 7.8740 -0.0970 21 6 2.5616 6.5032 -0.5577 22 6 2.7222 3.3709 1.2066 23 6 2.2615 2.0704 1.1998 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0908 1.5542 -2.1331 30 1 2.9010 3.8766 -2.1441 31 1 5.2225 4.8450 0.8745 32 1 6.2846 7.0036 0.2409 33 1 5.1767 7.4278 1.5639 34 1 4.6342 6.5932 -1.9523 35 1 4.1685 8.2499 -2.4072 36 1 6.3639 7.1577 -5.1544 37 1 2.5491 8.6580 -0.6524 38 1 2.8724 7.9946 0.9693 39 1 2.5772 6.4586 -1.6466 40 1 1.5418 6.3534 -0.2032 41 1 2.9010 3.8768 2.1439 42 1 2.0799 1.5582 2.1331 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093263045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:32 Heat of formation + Delta-G solvation = 11.302572 kcal Electronic energy + Delta-G solvation = -20335.299633 eV Core-core repulsion = 17471.772032 eV Total energy + Delta-G solvation = -2863.527601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.90047 -39.70895 -35.89524 -34.79895 -33.18813 -32.01916 -31.65104 -30.12158 -28.73592 -25.91829 -24.59677 -24.39924 -23.37478 -22.66638 -21.50567 -19.03026 -18.15234 -17.67243 -16.52501 -16.47021 -16.37323 -15.91209 -15.45625 -15.21869 -14.98384 -14.58954 -14.44085 -14.27929 -14.16693 -14.06826 -13.48699 -13.34231 -13.00956 -12.92958 -12.69095 -12.62976 -12.37671 -12.25416 -12.19323 -12.00887 -11.72153 -11.67959 -11.50486 -11.20659 -10.60699 -9.95686 -9.88387 -9.22124 -8.96325 -8.18855 -6.27936 0.26470 0.47047 1.24662 1.39818 1.40375 1.53898 2.40611 2.78928 3.13800 3.34533 3.79315 3.89623 3.93228 3.99420 4.10136 4.20343 4.31177 4.38485 4.48320 4.49794 4.55617 4.61795 4.67673 4.71448 4.76906 4.90829 4.96643 4.98393 5.04423 5.08988 5.14970 5.19479 5.25961 5.34420 5.38328 5.41604 5.63021 5.66257 5.69028 5.70061 5.92804 6.08082 6.09118 6.39373 6.64617 6.88927 7.41093 8.92210 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022687 B = 0.004278 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.880332 B = 6543.188713 C = 7142.543578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.089 4.089 4 C -0.122 4.122 5 C -0.126 4.126 6 C -0.062 4.062 7 C -0.097 4.097 8 C -0.167 4.167 9 C 0.088 3.912 10 N -0.540 5.540 11 C 0.210 3.790 12 C -0.522 4.522 13 H 0.062 0.938 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.262 1.262 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.054 3.946 21 C -0.105 4.105 22 C -0.111 4.111 23 C -0.117 4.117 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.132 0.868 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.098 0.902 34 H -0.023 1.023 35 H -0.006 1.006 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.853 -12.916 11.824 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.140 4.140 5 C -0.145 4.145 6 C -0.062 4.062 7 C -0.097 4.097 8 C -0.186 4.186 9 C -0.040 4.040 10 N -0.262 5.262 11 C 0.084 3.916 12 C -0.560 4.560 13 H 0.080 0.920 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.204 1.204 20 C -0.074 4.074 21 C -0.143 4.143 22 C -0.129 4.129 23 C -0.134 4.134 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.150 0.850 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.116 0.884 34 H -0.006 1.006 35 H 0.012 0.988 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.152 0.848 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.691 -12.450 11.744 19.669 hybrid contribution 0.661 -0.403 -1.219 1.444 sum -9.030 -12.853 10.525 18.908 Atomic orbital electron populations 1.21735 0.94069 1.02503 1.01847 1.20591 0.96635 0.90907 1.03765 1.20259 0.98563 0.97500 0.92557 1.21126 0.99999 0.94006 0.98891 1.21289 1.00253 0.95810 0.97117 1.19103 0.99934 0.93190 0.93954 1.19762 0.96054 0.92858 1.01033 1.23273 0.95465 0.99705 1.00194 1.21022 0.98230 0.87488 0.97248 1.62687 1.06707 1.50929 1.05919 1.19321 0.95315 0.92880 0.84080 1.21546 0.96534 1.41953 0.96006 0.91981 1.25882 1.02603 0.95166 0.96003 1.70105 1.37782 1.46702 1.02886 0.85382 0.79322 0.77803 0.78411 1.18582 1.20611 1.20444 1.22284 0.88573 0.94811 1.01773 1.20892 0.99054 0.94858 0.99511 1.21407 0.99391 0.95283 0.96786 1.21246 0.99402 0.94227 0.98569 0.90821 0.93412 0.92606 0.89595 0.90603 0.85003 0.88308 0.87268 0.90937 0.88406 1.00570 0.98782 0.92897 0.91071 0.89039 0.93457 0.89514 0.84819 0.83348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.89 71.98 0.71 -1.29 16 2 C -0.08 -1.28 6.06 29.85 0.18 -1.09 16 3 C -0.09 -1.98 5.14 -19.81 -0.10 -2.08 16 4 C -0.12 -3.27 9.68 22.23 0.22 -3.05 16 5 C -0.13 -4.18 9.75 22.52 0.22 -3.96 16 6 C -0.06 -2.00 5.17 -20.12 -0.10 -2.11 16 7 C -0.10 -3.48 4.64 -17.95 -0.08 -3.56 16 8 C -0.17 -6.11 8.95 25.02 0.22 -5.89 16 9 C 0.09 3.42 5.81 85.40 0.50 3.92 16 10 N -0.54 -23.84 5.01 -905.57 -4.54 -28.38 16 11 C 0.21 11.43 3.78 85.56 0.32 11.75 16 12 C -0.52 -30.19 8.35 25.60 0.21 -29.97 16 13 H 0.06 3.52 7.27 -2.91 -0.02 3.50 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 16 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 17 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 C 0.05 1.95 6.01 86.27 0.52 2.47 16 21 C -0.10 -3.77 5.22 29.76 0.16 -3.62 16 22 C -0.11 -2.90 9.68 22.52 0.22 -2.69 16 23 C -0.12 -2.56 9.68 22.23 0.22 -2.34 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 28 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 29 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.10 3.66 8.06 -2.91 -0.02 3.63 16 31 H 0.11 3.72 7.98 -2.91 -0.02 3.70 16 32 H 0.07 3.13 6.68 -2.39 -0.02 3.11 16 33 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 34 H -0.02 -1.38 6.03 -2.39 -0.01 -1.39 16 35 H -0.01 -0.35 8.08 -2.39 -0.02 -0.37 16 36 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.09 2.78 8.08 -2.39 -0.02 2.76 16 39 H 0.05 1.99 7.14 -2.39 -0.02 1.97 16 40 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -66.60 339.22 2.61 -63.99 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.97 Total: 17.25 kcal Atomic # 6 Polarization: -46.85 SS G_CDS: 3.86 Total: -42.99 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -4.25 Total: -85.46 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -66.60 2.61 -63.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093263045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.295 kcal (2) G-P(sol) polarization free energy of solvation -66.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds