Wall clock time and date at job start Mon Mar 30 2020 01:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99954 * 2 1 4 4 H 1.48500 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46948 * 299.99556 * 3 2 1 6 6 H 1.48497 * 109.47168 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00075 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99952 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47176 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00281 * 169.99829 * 10 9 7 12 12 C 1.53240 * 109.34101 * 187.25470 * 11 10 9 13 13 N 1.47077 * 108.52102 * 306.16938 * 12 11 10 14 14 C 1.34772 * 120.88051 * 231.19160 * 13 12 11 15 15 O 1.21280 * 120.00400 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99815 * 180.02562 * 14 13 12 17 17 O 1.42901 * 109.46955 * 179.97438 * 16 14 13 18 18 C 1.42905 * 114.00134 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47264 * 179.97438 * 18 17 16 20 20 N 1.46898 * 109.47386 * 64.99761 * 19 18 17 21 21 C 1.47080 * 118.23612 * 51.45505 * 13 12 11 22 22 C 1.46893 * 111.00107 * 294.30129 * 10 9 7 23 23 H 0.96998 * 119.99886 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47122 * 59.99912 * 9 7 2 25 25 H 1.09001 * 109.47053 * 299.99794 * 9 7 2 26 26 H 1.08994 * 109.49196 * 67.28874 * 11 10 9 27 27 H 1.09002 * 109.48960 * 307.21303 * 11 10 9 28 28 H 1.09001 * 109.62453 * 186.46007 * 12 11 10 29 29 H 1.08998 * 109.62616 * 65.88134 * 12 11 10 30 30 H 1.08994 * 109.47512 * 59.99738 * 16 14 13 31 31 H 1.09002 * 109.46988 * 299.99185 * 16 14 13 32 32 H 1.09001 * 109.47103 * 300.00246 * 18 17 16 33 33 H 1.09004 * 109.47054 * 59.99750 * 18 17 16 34 34 H 1.09004 * 109.46881 * 185.00370 * 19 18 17 35 35 H 1.09002 * 109.47196 * 304.99885 * 19 18 17 36 36 H 1.00903 * 110.99944 * 179.97438 * 20 19 18 37 37 H 1.00895 * 111.00039 * 303.95815 * 20 19 18 38 38 H 1.09001 * 109.62807 * 68.25739 * 21 13 12 39 39 H 1.08998 * 109.62766 * 188.83102 * 21 13 12 40 40 H 1.08998 * 109.49518 * 292.70992 * 22 10 9 41 41 H 1.09002 * 109.49351 * 52.78180 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5212 -4.8935 0.2387 12 6 2.5638 -6.0032 0.4115 13 7 3.4616 -5.9863 -0.7533 14 6 3.7118 -7.1124 -1.4502 15 8 3.1943 -8.1581 -1.1191 16 6 4.6355 -7.0724 -2.6403 17 8 4.7399 -8.3804 -3.2063 18 6 5.5970 -8.4531 -4.3475 19 6 5.6336 -9.8918 -4.8669 20 7 4.3012 -10.2697 -5.3567 21 6 4.0837 -4.7090 -1.1339 22 6 2.9767 -3.6492 -1.2493 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 0.8795 -5.1264 -0.6110 27 1 0.9161 -4.8191 1.1423 28 1 2.0631 -6.9694 0.4740 29 1 3.1394 -5.8265 1.3201 30 1 5.6219 -6.7342 -2.3234 31 1 4.2376 -6.3842 -3.3861 32 1 5.2185 -7.7939 -5.1287 33 1 6.6034 -8.1429 -4.0665 34 1 6.3546 -9.9658 -5.6811 35 1 5.9274 -10.5623 -4.0593 36 1 4.2994 -11.2164 -5.7058 37 1 3.6037 -10.1476 -4.6380 38 1 4.8027 -4.4103 -0.3710 39 1 4.5885 -4.8192 -2.0936 40 1 2.3148 -3.8993 -2.0784 41 1 3.4271 -2.6722 -1.4251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134827144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:27 Heat of formation + Delta-G solvation = -68.960292 kcal Electronic energy + Delta-G solvation = -21123.833180 eV Core-core repulsion = 17845.975857 eV Total energy + Delta-G solvation = -3277.857323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.08199 -38.28317 -37.27669 -34.59483 -34.44412 -32.49092 -31.07294 -29.24481 -28.24383 -27.03735 -25.25111 -23.29656 -22.18219 -22.07492 -20.68243 -18.77241 -17.39367 -16.93999 -16.64974 -16.40412 -15.72168 -15.66623 -15.24326 -14.76841 -14.49272 -14.31674 -14.10798 -13.85402 -13.63840 -13.12123 -12.89888 -12.36055 -12.29317 -12.10378 -11.92970 -11.56554 -11.33396 -11.10651 -11.01438 -10.78802 -10.68121 -10.54797 -9.94454 -9.93721 -9.60961 -9.30589 -8.97597 -8.55366 -8.47528 -7.37543 -6.09757 -4.12050 2.64442 2.71080 3.26062 3.33954 3.37440 3.69625 4.28377 4.35468 4.49727 4.71818 4.77962 4.93873 4.98466 5.03370 5.14100 5.21292 5.26313 5.33600 5.38928 5.47175 5.53371 5.59989 5.71500 5.81629 5.99090 6.24777 6.39902 6.40576 6.58796 6.80215 6.87815 7.17807 7.19404 7.24086 7.47916 7.70482 7.97250 8.07717 8.22817 8.43093 8.95371 9.52748 11.01097 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.031134 B = 0.003396 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.113799 B = 8243.785987 C = 8696.444293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.041 3.959 12 C 0.120 3.880 13 N -0.607 5.607 14 C 0.515 3.485 15 O -0.532 6.532 16 C 0.048 3.952 17 O -0.367 6.367 18 C 0.058 3.942 19 C 0.066 3.934 20 N -0.852 5.852 21 C 0.107 3.893 22 C 0.050 3.950 23 H 0.262 0.738 24 H -0.009 1.009 25 H 0.032 0.968 26 H 0.027 0.973 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.340 0.660 37 H 0.353 0.647 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.026 0.974 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.340 -14.503 -7.116 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.002 4.002 13 N -0.343 5.343 14 C 0.302 3.698 15 O -0.408 6.408 16 C -0.032 4.032 17 O -0.285 6.285 18 C -0.019 4.019 19 C -0.065 4.065 20 N -0.383 5.383 21 C -0.016 4.016 22 C -0.080 4.080 23 H 0.071 0.929 24 H 0.009 0.991 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.152 0.848 37 H 0.167 0.833 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.044 0.956 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.239 -14.435 -7.002 19.589 hybrid contribution -0.020 0.539 -0.035 0.540 sum 11.220 -13.897 -7.037 19.197 Atomic orbital electron populations 1.69967 1.06109 1.26799 1.50758 1.25004 0.94865 0.99398 0.95346 0.86439 0.80017 0.83375 0.77558 1.19627 1.21108 1.20987 1.21168 0.93483 0.89839 1.50356 0.91737 1.19738 0.89996 0.87140 0.96289 1.62075 1.28153 1.02773 1.33111 1.22415 0.94952 0.90468 1.01043 1.21764 0.91643 0.99587 0.87225 1.48172 1.47174 1.08330 1.30576 1.20150 0.82224 0.83621 0.83792 1.90685 1.51383 1.30023 1.68750 1.22222 0.99364 0.86535 0.95033 1.87933 1.67947 1.27426 1.45182 1.22676 0.93551 0.97875 0.87842 1.21763 0.92138 0.94476 0.98153 1.58743 1.06349 1.30447 1.42721 1.22149 0.96337 0.82746 1.00331 1.22413 0.95053 0.98981 0.91522 0.92882 0.99067 0.94970 0.95458 0.89943 0.89347 0.90800 0.90349 0.90128 0.92104 0.92702 0.89714 0.94622 0.84841 0.83321 0.90270 0.90447 0.95574 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -13.65 8.41 -34.44 -0.29 -13.94 16 8 H 0.06 1.69 7.13 -52.48 -0.37 1.31 16 9 C 0.19 4.83 4.72 -4.97 -0.02 4.81 16 10 N -0.54 -10.88 4.62 -235.47 -1.09 -11.97 16 11 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 12 C 0.12 1.86 6.60 -3.60 -0.02 1.84 16 13 N -0.61 -9.01 3.00 -172.19 -0.52 -9.53 16 14 C 0.52 7.86 7.78 -10.99 -0.09 7.77 16 15 O -0.53 -10.05 15.95 -14.35 -0.23 -10.28 16 16 C 0.05 0.55 4.78 36.01 0.17 0.73 16 17 O -0.37 -4.62 9.39 -55.14 -0.52 -5.14 16 18 C 0.06 0.52 6.28 37.16 0.23 0.76 16 19 C 0.07 0.54 7.21 -3.83 -0.03 0.52 16 20 N -0.85 -7.78 9.62 -10.37 -0.10 -7.88 16 21 C 0.11 1.44 6.53 -3.37 -0.02 1.42 16 22 C 0.05 0.87 5.47 -3.47 -0.02 0.85 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 25 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 28 H 0.09 1.38 7.06 -51.93 -0.37 1.01 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 0.71 7.99 -51.93 -0.41 0.29 16 31 H 0.08 0.81 7.67 -51.93 -0.40 0.41 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.34 2.38 9.08 -39.29 -0.36 2.02 16 37 H 0.35 3.71 8.55 -39.29 -0.34 3.37 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.79 6.02 -51.93 -0.31 0.47 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 1.81 6.67 -51.93 -0.35 1.47 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -32.39 333.29 -8.59 -40.98 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.67 Total: 1.38 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -0.20 Total: 6.87 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.97 Total: -54.69 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.75 Total: -15.42 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.39 -8.59 -40.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134827144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.975 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds