Wall clock time and date at job start Mon Mar 30 2020 01:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99954 * 2 1 4 4 H 1.48500 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46948 * 299.99556 * 3 2 1 6 6 H 1.48497 * 109.47168 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00075 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99952 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47176 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00281 * 169.99829 * 10 9 7 12 12 C 1.53240 * 109.34101 * 187.25470 * 11 10 9 13 13 N 1.47077 * 108.52102 * 306.16938 * 12 11 10 14 14 C 1.34772 * 120.88051 * 231.19160 * 13 12 11 15 15 O 1.21280 * 120.00400 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99815 * 180.02562 * 14 13 12 17 17 O 1.42901 * 109.46955 * 179.97438 * 16 14 13 18 18 C 1.42905 * 114.00134 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47264 * 179.97438 * 18 17 16 20 20 N 1.46898 * 109.47386 * 64.99761 * 19 18 17 21 21 C 1.47080 * 118.23612 * 51.45505 * 13 12 11 22 22 C 1.46893 * 111.00107 * 294.30129 * 10 9 7 23 23 H 0.96998 * 119.99886 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47122 * 59.99912 * 9 7 2 25 25 H 1.09001 * 109.47053 * 299.99794 * 9 7 2 26 26 H 1.08994 * 109.49196 * 67.28874 * 11 10 9 27 27 H 1.09002 * 109.48960 * 307.21303 * 11 10 9 28 28 H 1.09001 * 109.62453 * 186.46007 * 12 11 10 29 29 H 1.08998 * 109.62616 * 65.88134 * 12 11 10 30 30 H 1.08994 * 109.47512 * 59.99738 * 16 14 13 31 31 H 1.09002 * 109.46988 * 299.99185 * 16 14 13 32 32 H 1.09001 * 109.47103 * 300.00246 * 18 17 16 33 33 H 1.09004 * 109.47054 * 59.99750 * 18 17 16 34 34 H 1.09004 * 109.46881 * 185.00370 * 19 18 17 35 35 H 1.09002 * 109.47196 * 304.99885 * 19 18 17 36 36 H 1.00903 * 110.99944 * 179.97438 * 20 19 18 37 37 H 1.00895 * 111.00039 * 303.95815 * 20 19 18 38 38 H 1.09001 * 109.62807 * 68.25739 * 21 13 12 39 39 H 1.08998 * 109.62766 * 188.83102 * 21 13 12 40 40 H 1.08998 * 109.49518 * 292.70992 * 22 10 9 41 41 H 1.09002 * 109.49351 * 52.78180 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5212 -4.8935 0.2387 12 6 2.5638 -6.0032 0.4115 13 7 3.4616 -5.9863 -0.7533 14 6 3.7118 -7.1124 -1.4502 15 8 3.1943 -8.1581 -1.1191 16 6 4.6355 -7.0724 -2.6403 17 8 4.7399 -8.3804 -3.2063 18 6 5.5970 -8.4531 -4.3475 19 6 5.6336 -9.8918 -4.8669 20 7 4.3012 -10.2697 -5.3567 21 6 4.0837 -4.7090 -1.1339 22 6 2.9767 -3.6492 -1.2493 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 0.8795 -5.1264 -0.6110 27 1 0.9161 -4.8191 1.1423 28 1 2.0631 -6.9694 0.4740 29 1 3.1394 -5.8265 1.3201 30 1 5.6219 -6.7342 -2.3234 31 1 4.2376 -6.3842 -3.3861 32 1 5.2185 -7.7939 -5.1287 33 1 6.6034 -8.1429 -4.0665 34 1 6.3546 -9.9658 -5.6811 35 1 5.9274 -10.5623 -4.0593 36 1 4.2994 -11.2164 -5.7058 37 1 3.6037 -10.1476 -4.6380 38 1 4.8027 -4.4103 -0.3710 39 1 4.5885 -4.8192 -2.0936 40 1 2.3148 -3.8993 -2.0784 41 1 3.4271 -2.6722 -1.4251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134827144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:26 Heat of formation + Delta-G solvation = -94.472652 kcal Electronic energy + Delta-G solvation = -21124.939479 eV Core-core repulsion = 17845.975857 eV Total energy + Delta-G solvation = -3278.963622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27911 -39.34424 -38.50470 -35.99355 -35.29887 -34.41957 -32.39127 -30.41666 -29.55995 -28.14396 -26.79751 -24.65264 -23.81269 -22.83874 -22.12172 -20.01187 -18.49194 -18.44390 -17.82734 -17.48948 -16.87134 -16.64246 -16.50169 -16.12194 -16.00752 -15.51423 -15.32719 -15.11061 -15.10702 -14.29671 -14.08210 -13.96977 -13.53944 -13.06557 -13.02784 -12.87100 -12.74773 -12.60728 -12.42528 -12.32842 -12.21902 -12.10187 -11.77822 -11.26748 -10.81018 -10.70706 -10.62220 -9.80942 -9.64611 -9.07219 -8.19746 -6.30216 1.44029 1.45286 1.49739 1.58216 1.67092 2.41734 2.80478 3.12960 3.22207 3.50156 3.66604 3.94129 4.02027 4.10246 4.19649 4.22376 4.23730 4.28715 4.37053 4.44447 4.52544 4.53761 4.71872 4.76419 4.84063 4.91509 4.94036 5.01567 5.19434 5.22011 5.40374 5.64743 6.02136 6.03976 6.17666 6.23475 6.39363 6.53482 6.55073 6.86328 7.06882 7.40129 8.91955 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.031134 B = 0.003396 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.113799 B = 8243.785987 C = 8696.444293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.256 1.256 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.072 0.928 9 C 0.208 3.792 10 N -0.539 5.539 11 C 0.044 3.956 12 C 0.128 3.872 13 N -0.609 5.609 14 C 0.511 3.489 15 O -0.576 6.576 16 C 0.051 3.949 17 O -0.395 6.395 18 C 0.054 3.946 19 C 0.063 3.937 20 N -0.861 5.861 21 C 0.118 3.882 22 C 0.047 3.953 23 H 0.263 0.737 24 H -0.041 1.041 25 H 0.003 0.997 26 H 0.013 0.987 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.030 0.970 36 H 0.349 0.651 37 H 0.343 0.657 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.015 0.985 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.272 -14.233 -7.978 21.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.180 1.180 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.557 4.557 8 H 0.090 0.910 9 C 0.081 3.919 10 N -0.264 5.264 11 C -0.086 4.086 12 C 0.005 3.995 13 N -0.344 5.344 14 C 0.300 3.700 15 O -0.455 6.455 16 C -0.028 4.028 17 O -0.315 6.315 18 C -0.022 4.022 19 C -0.068 4.068 20 N -0.391 5.391 21 C -0.004 4.004 22 C -0.082 4.082 23 H 0.072 0.928 24 H -0.024 1.024 25 H 0.022 0.978 26 H 0.032 0.968 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.048 0.952 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.111 0.889 39 H 0.138 0.862 40 H 0.034 0.966 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.211 -14.179 -7.884 21.568 hybrid contribution -0.970 0.390 0.210 1.066 sum 13.241 -13.790 -7.674 20.600 Atomic orbital electron populations 1.70108 1.07965 1.27855 1.51930 1.25962 0.95681 1.03413 0.94840 0.85297 0.79286 0.78378 0.77426 1.17966 1.20708 1.20894 1.21493 0.93918 0.90543 1.49763 0.90958 1.19385 0.90118 0.89002 0.93356 1.62014 1.26999 1.02422 1.34916 1.22429 0.95611 0.90103 1.00417 1.21599 0.91380 0.98158 0.88322 1.48262 1.46882 1.09005 1.30203 1.20904 0.82039 0.82750 0.84310 1.90665 1.53206 1.31597 1.70029 1.22299 1.00008 0.86794 0.93688 1.87909 1.69099 1.28042 1.46407 1.22876 0.94212 0.98274 0.86882 1.21888 0.92047 0.94164 0.98722 1.58795 1.06646 1.31330 1.42363 1.22204 0.94619 0.80441 1.03141 1.22494 0.95669 1.00319 0.89733 0.92775 1.02380 0.97843 0.96827 0.90071 0.89553 0.89629 0.86924 0.88272 0.91908 0.90292 0.87599 0.95156 0.83810 0.84470 0.88941 0.86191 0.96642 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.64 13.29 21.45 0.28 -55.35 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 42.51 29.54 68.60 2.03 44.54 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.52 -27.96 8.41 25.60 0.22 -27.74 16 8 H 0.07 3.71 7.13 -2.91 -0.02 3.69 16 9 C 0.21 10.75 4.72 85.56 0.40 11.16 16 10 N -0.54 -22.01 4.62 -898.90 -4.15 -26.16 16 11 C 0.04 1.57 5.62 86.38 0.49 2.05 16 12 C 0.13 3.87 6.60 86.35 0.57 4.44 16 13 N -0.61 -16.87 3.00 -817.07 -2.45 -19.32 16 14 C 0.51 14.62 7.78 87.66 0.68 15.31 16 15 O -0.58 -21.46 15.95 16.01 0.26 -21.20 16 16 C 0.05 1.01 4.78 71.24 0.34 1.35 16 17 O -0.40 -9.09 9.39 -129.94 -1.22 -10.31 16 18 C 0.05 0.83 6.28 71.98 0.45 1.28 16 19 C 0.06 0.91 7.21 86.30 0.62 1.53 16 20 N -0.86 -14.74 9.62 -186.72 -1.80 -16.54 16 21 C 0.12 2.79 6.53 86.50 0.57 3.36 16 22 C 0.05 1.59 5.47 86.54 0.47 2.06 16 23 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 24 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 25 H 0.00 0.20 7.97 -2.39 -0.02 0.18 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.08 2.89 7.99 -2.39 -0.02 2.87 16 28 H 0.09 2.68 7.06 -2.39 -0.02 2.66 16 29 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.11 1.46 7.99 -2.39 -0.02 1.44 16 31 H 0.10 1.60 7.67 -2.39 -0.02 1.58 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.35 4.55 9.08 -89.69 -0.81 3.74 16 37 H 0.34 7.06 8.55 -89.70 -0.77 6.29 16 38 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.12 1.86 6.02 -2.39 -0.01 1.85 16 40 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.09 3.21 6.67 -2.39 -0.02 3.20 16 Total: -1.00 -71.84 333.29 -2.33 -74.17 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -0.55 Total: 14.99 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 5.27 Total: 15.19 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -8.12 Total: -117.38 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.97 Total: -31.52 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -71.84 -2.33 -74.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134827144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.299 kcal (2) G-P(sol) polarization free energy of solvation -71.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds