Wall clock time and date at job start Mon Mar 30 2020 01:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99661 * 2 1 4 4 H 1.48506 * 109.47113 * 269.99753 * 3 2 1 5 5 H 1.48497 * 109.47525 * 29.99893 * 3 2 1 6 6 H 1.48501 * 109.46954 * 150.00022 * 3 2 1 7 7 C 1.37876 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99819 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47027 * 175.61659 * 9 7 2 11 11 C 1.46901 * 110.99840 * 75.57204 * 10 9 7 12 12 C 1.50704 * 109.47065 * 190.00061 * 11 10 9 13 13 C 1.32562 * 120.00156 * 124.99861 * 12 11 10 14 14 C 1.47818 * 119.99731 * 180.02562 * 13 12 11 15 15 C 1.39533 * 120.13508 * 180.02562 * 14 13 12 16 16 C 1.37972 * 119.85259 * 179.97438 * 15 14 13 17 17 C 1.38345 * 120.14308 * 359.96993 * 16 15 14 18 18 C 1.38343 * 120.28852 * 0.02679 * 17 16 15 19 19 C 1.37980 * 120.13568 * 0.02562 * 18 17 16 20 20 C 1.46897 * 110.99733 * 199.52561 * 10 9 7 21 21 C 1.52999 * 109.47029 * 71.74976 * 20 10 9 22 22 C 1.53001 * 117.49647 * 244.09388 * 21 20 10 23 23 C 1.53008 * 117.49850 * 175.43268 * 21 20 10 24 24 H 0.96998 * 120.00828 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46815 * 55.61529 * 9 7 2 26 26 H 1.09005 * 109.46854 * 295.61482 * 9 7 2 27 27 H 1.09003 * 109.47414 * 70.00338 * 11 10 9 28 28 H 1.09001 * 109.47070 * 309.99826 * 11 10 9 29 29 H 1.08000 * 119.99782 * 305.00134 * 12 11 10 30 30 H 1.08000 * 120.00062 * 0.02562 * 13 12 11 31 31 H 1.07994 * 120.07782 * 359.95169 * 15 14 13 32 32 H 1.07998 * 119.93232 * 179.97438 * 16 15 14 33 33 H 1.07998 * 119.85851 * 179.74444 * 17 16 15 34 34 H 1.07994 * 119.93585 * 179.97438 * 18 17 16 35 35 H 1.08007 * 120.07034 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.47132 * 191.74489 * 20 10 9 37 37 H 1.09000 * 109.47478 * 311.74956 * 20 10 9 38 38 H 1.09001 * 115.55360 * 29.76388 * 21 20 10 39 39 H 1.08996 * 117.50170 * 359.97438 * 22 21 20 40 40 H 1.09002 * 117.49618 * 145.02802 * 22 21 20 41 41 H 1.08992 * 117.49934 * 214.98016 * 23 21 20 42 42 H 1.09002 * 117.49552 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2023 -3.6137 -0.1047 11 6 2.8899 -3.8413 1.1733 12 6 4.0215 -4.8153 0.9683 13 6 5.2532 -4.4863 1.3317 14 6 6.3632 -5.4415 1.1301 15 6 7.6607 -5.0985 1.5120 16 6 8.6922 -5.9947 1.3216 17 6 8.4423 -7.2314 0.7540 18 6 7.1581 -7.5776 0.3733 19 6 6.1179 -6.6899 0.5573 20 6 1.5316 -4.8362 -0.5667 21 6 1.1690 -4.6910 -2.0460 22 6 -0.3165 -4.6922 -2.4126 23 6 0.5554 -5.9057 -2.7455 24 1 -0.4851 0.8400 0.0004 25 1 0.5671 -2.5238 -0.8478 26 1 0.6843 -2.5915 0.9271 27 1 2.1852 -4.2503 1.8974 28 1 3.2865 -2.8967 1.5457 29 1 3.8290 -5.7812 0.5254 30 1 5.4457 -3.5205 1.7750 31 1 7.8571 -4.1335 1.9552 32 1 9.6970 -5.7304 1.6163 33 1 9.2538 -7.9278 0.6033 34 1 6.9695 -8.5443 -0.0696 35 1 5.1157 -6.9615 0.2601 36 1 2.1998 -5.6879 -0.4384 37 1 0.6242 -4.9953 0.0159 38 1 1.8315 -4.0542 -2.6322 39 1 -1.0353 -4.7969 -1.6000 40 1 -0.6311 -4.0566 -3.2403 41 1 0.8140 -6.0676 -3.7919 42 1 0.4098 -6.8080 -2.1516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176252816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:46 Heat of formation + Delta-G solvation = 64.463095 kcal Electronic energy + Delta-G solvation = -19757.674724 eV Core-core repulsion = 16896.452336 eV Total energy + Delta-G solvation = -2861.222387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.14432 -37.88148 -35.84436 -33.90643 -32.41125 -30.94946 -29.91545 -27.64715 -26.22144 -24.04271 -22.78450 -22.08366 -21.84012 -20.80392 -19.73775 -18.86612 -17.05659 -16.36342 -15.47423 -15.42228 -14.79670 -14.59940 -14.48042 -13.89659 -13.74473 -13.50182 -13.28984 -12.90525 -12.55752 -12.24482 -12.09822 -11.94082 -11.30185 -11.20135 -11.13426 -10.99076 -10.79231 -10.69222 -10.59658 -10.42299 -10.04453 -9.88780 -9.84124 -9.35361 -9.14520 -8.94604 -8.39081 -7.94495 -7.23761 -5.99482 -4.00332 1.04392 1.41779 2.73050 3.33714 3.39740 3.43236 3.98804 4.22651 4.45068 4.78283 4.86886 4.92666 4.96096 5.10160 5.28556 5.32649 5.35818 5.40784 5.47268 5.49617 5.62957 5.81589 5.90381 5.94199 5.98164 5.99484 6.09169 6.12071 6.24931 6.31634 6.35523 6.47503 6.47980 6.51117 6.51824 6.80369 6.94156 7.04682 7.11294 7.27720 7.36934 7.84364 8.14119 8.21832 8.56445 9.07345 9.63528 11.11035 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.004721 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.574951 B = 5929.089989 C = 7676.303139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.192 3.808 10 N -0.528 5.528 11 C 0.085 3.915 12 C -0.105 4.105 13 C -0.142 4.142 14 C -0.036 4.036 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.134 4.134 18 C -0.118 4.118 19 C -0.121 4.121 20 C 0.084 3.916 21 C -0.128 4.128 22 C -0.178 4.178 23 C -0.190 4.190 24 H 0.260 0.740 25 H 0.041 0.959 26 H -0.013 1.013 27 H 0.032 0.968 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.062 0.938 37 H 0.024 0.976 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.184 -14.195 0.772 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.252 5.252 11 C -0.043 4.043 12 C -0.124 4.124 13 C -0.161 4.161 14 C -0.036 4.036 15 C -0.135 4.135 16 C -0.138 4.138 17 C -0.152 4.152 18 C -0.136 4.136 19 C -0.139 4.139 20 C -0.045 4.045 21 C -0.147 4.147 22 C -0.215 4.215 23 C -0.228 4.228 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.005 0.995 27 H 0.050 0.950 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.129 0.871 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.363 -13.925 0.433 17.363 hybrid contribution -0.264 0.760 0.489 0.941 sum 10.099 -13.165 0.922 16.618 Atomic orbital electron populations 1.69952 1.06012 1.26651 1.51284 1.24965 0.94820 0.99175 0.95594 0.86544 0.79730 0.83298 0.78106 1.20692 1.21397 1.19893 1.21177 0.93503 0.89945 1.49599 0.91969 1.19794 0.90148 0.87196 0.96147 1.62179 1.31634 1.04774 1.26653 1.21119 0.93610 0.98029 0.91529 1.23521 0.94569 0.98788 0.95484 1.21596 0.91815 0.98600 1.04041 1.19182 0.93595 0.93790 0.96992 1.21290 0.92167 0.99642 1.00361 1.21058 0.98884 0.94159 0.99678 1.21125 0.96805 0.96936 1.00296 1.21054 0.92996 0.99416 1.00164 1.21341 0.99333 0.93602 0.99599 1.21631 0.96437 0.93607 0.92813 1.22249 0.95793 0.99937 0.96692 1.22971 0.94422 1.00713 1.03393 1.22948 1.06220 0.92838 1.00767 0.93017 0.94109 0.99500 0.94980 0.89249 0.87518 0.86219 0.85913 0.86295 0.86502 0.86287 0.85875 0.91952 0.95790 0.87057 0.89248 0.89162 0.89366 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -14.03 8.60 -34.44 -0.30 -14.33 16 8 H 0.06 1.73 7.66 -52.49 -0.40 1.33 16 9 C 0.19 4.91 4.59 -4.97 -0.02 4.89 16 10 N -0.53 -11.13 4.37 -237.51 -1.04 -12.17 16 11 C 0.08 1.59 5.24 -4.97 -0.03 1.56 16 12 C -0.11 -1.65 8.60 -36.21 -0.31 -1.96 16 13 C -0.14 -2.10 9.52 -37.57 -0.36 -2.46 16 14 C -0.04 -0.49 5.87 -105.02 -0.62 -1.10 16 15 C -0.12 -1.43 9.79 -39.20 -0.38 -1.82 16 16 C -0.12 -1.30 10.03 -39.64 -0.40 -1.69 16 17 C -0.13 -1.39 10.04 -39.50 -0.40 -1.79 16 18 C -0.12 -1.30 10.03 -39.64 -0.40 -1.70 16 19 C -0.12 -1.53 9.40 -39.20 -0.37 -1.89 16 20 C 0.08 1.49 5.11 -3.83 -0.02 1.48 16 21 C -0.13 -2.21 4.97 -90.62 -0.45 -2.66 16 22 C -0.18 -2.87 9.98 -26.69 -0.27 -3.13 16 23 C -0.19 -2.64 10.26 -26.68 -0.27 -2.91 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.04 1.12 6.94 -51.93 -0.36 0.76 16 26 H -0.01 -0.35 8.00 -51.93 -0.42 -0.77 16 27 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.09 1.82 6.99 -51.93 -0.36 1.45 16 29 H 0.11 1.52 4.73 -52.49 -0.25 1.27 16 30 H 0.12 1.75 7.87 -52.49 -0.41 1.34 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.44 6.17 -52.48 -0.32 1.12 16 36 H 0.06 0.98 6.19 -51.93 -0.32 0.66 16 37 H 0.02 0.44 7.79 -51.93 -0.40 0.03 16 38 H 0.11 2.11 8.14 -51.93 -0.42 1.68 16 39 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 347.58 15.07 5.24 5.24 Total: -1.00 -29.77 347.58 -11.37 -41.14 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.61 Total: 3.05 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -4.68 Total: -28.06 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.30 Total: -38.03 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.77 -11.37 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176252816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.606 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds