Wall clock time and date at job start Mon Mar 30 2020 01:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99661 * 2 1 4 4 H 1.48506 * 109.47113 * 269.99753 * 3 2 1 5 5 H 1.48497 * 109.47525 * 29.99893 * 3 2 1 6 6 H 1.48501 * 109.46954 * 150.00022 * 3 2 1 7 7 C 1.37876 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99819 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47027 * 175.61659 * 9 7 2 11 11 C 1.46901 * 110.99840 * 75.57204 * 10 9 7 12 12 C 1.50704 * 109.47065 * 190.00061 * 11 10 9 13 13 C 1.32562 * 120.00156 * 124.99861 * 12 11 10 14 14 C 1.47818 * 119.99731 * 180.02562 * 13 12 11 15 15 C 1.39533 * 120.13508 * 180.02562 * 14 13 12 16 16 C 1.37972 * 119.85259 * 179.97438 * 15 14 13 17 17 C 1.38345 * 120.14308 * 359.96993 * 16 15 14 18 18 C 1.38343 * 120.28852 * 0.02679 * 17 16 15 19 19 C 1.37980 * 120.13568 * 0.02562 * 18 17 16 20 20 C 1.46897 * 110.99733 * 199.52561 * 10 9 7 21 21 C 1.52999 * 109.47029 * 71.74976 * 20 10 9 22 22 C 1.53001 * 117.49647 * 244.09388 * 21 20 10 23 23 C 1.53008 * 117.49850 * 175.43268 * 21 20 10 24 24 H 0.96998 * 120.00828 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46815 * 55.61529 * 9 7 2 26 26 H 1.09005 * 109.46854 * 295.61482 * 9 7 2 27 27 H 1.09003 * 109.47414 * 70.00338 * 11 10 9 28 28 H 1.09001 * 109.47070 * 309.99826 * 11 10 9 29 29 H 1.08000 * 119.99782 * 305.00134 * 12 11 10 30 30 H 1.08000 * 120.00062 * 0.02562 * 13 12 11 31 31 H 1.07994 * 120.07782 * 359.95169 * 15 14 13 32 32 H 1.07998 * 119.93232 * 179.97438 * 16 15 14 33 33 H 1.07998 * 119.85851 * 179.74444 * 17 16 15 34 34 H 1.07994 * 119.93585 * 179.97438 * 18 17 16 35 35 H 1.08007 * 120.07034 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.47132 * 191.74489 * 20 10 9 37 37 H 1.09000 * 109.47478 * 311.74956 * 20 10 9 38 38 H 1.09001 * 115.55360 * 29.76388 * 21 20 10 39 39 H 1.08996 * 117.50170 * 359.97438 * 22 21 20 40 40 H 1.09002 * 117.49618 * 145.02802 * 22 21 20 41 41 H 1.08992 * 117.49934 * 214.98016 * 23 21 20 42 42 H 1.09002 * 117.49552 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2023 -3.6137 -0.1047 11 6 2.8899 -3.8413 1.1733 12 6 4.0215 -4.8153 0.9683 13 6 5.2532 -4.4863 1.3317 14 6 6.3632 -5.4415 1.1301 15 6 7.6607 -5.0985 1.5120 16 6 8.6922 -5.9947 1.3216 17 6 8.4423 -7.2314 0.7540 18 6 7.1581 -7.5776 0.3733 19 6 6.1179 -6.6899 0.5573 20 6 1.5316 -4.8362 -0.5667 21 6 1.1690 -4.6910 -2.0460 22 6 -0.3165 -4.6922 -2.4126 23 6 0.5554 -5.9057 -2.7455 24 1 -0.4851 0.8400 0.0004 25 1 0.5671 -2.5238 -0.8478 26 1 0.6843 -2.5915 0.9271 27 1 2.1852 -4.2503 1.8974 28 1 3.2865 -2.8967 1.5457 29 1 3.8290 -5.7812 0.5254 30 1 5.4457 -3.5205 1.7750 31 1 7.8571 -4.1335 1.9552 32 1 9.6970 -5.7304 1.6163 33 1 9.2538 -7.9278 0.6033 34 1 6.9695 -8.5443 -0.0696 35 1 5.1157 -6.9615 0.2601 36 1 2.1998 -5.6879 -0.4384 37 1 0.6242 -4.9953 0.0159 38 1 1.8315 -4.0542 -2.6322 39 1 -1.0353 -4.7969 -1.6000 40 1 -0.6311 -4.0566 -3.2403 41 1 0.8140 -6.0676 -3.7919 42 1 0.4098 -6.8080 -2.1516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176252816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:46 Heat of formation + Delta-G solvation = 49.910252 kcal Electronic energy + Delta-G solvation = -19758.305782 eV Core-core repulsion = 16896.452336 eV Total energy + Delta-G solvation = -2861.853446 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07981 -39.33503 -37.22296 -35.33744 -34.34513 -31.81549 -31.08684 -29.53325 -27.60721 -25.75953 -23.84446 -23.25997 -23.12755 -22.21915 -21.17171 -20.09088 -18.52089 -17.98083 -16.95843 -16.54438 -16.38608 -15.86051 -15.72658 -15.48094 -14.96517 -14.81320 -14.25628 -14.18880 -13.93989 -13.82914 -13.46788 -13.42872 -13.06875 -12.69338 -12.54442 -12.35811 -12.26148 -12.21372 -12.05434 -11.72674 -11.64079 -11.40199 -11.13152 -10.99671 -10.67687 -10.54995 -9.81049 -9.12902 -8.85740 -8.17678 -6.27113 0.05752 0.55173 1.40096 1.41369 1.52190 1.63270 2.40904 2.94394 3.06158 3.14078 3.36764 3.75329 3.91758 3.98654 4.07478 4.16230 4.22339 4.25382 4.31865 4.46117 4.51597 4.56205 4.62688 4.72099 4.74875 4.79253 4.82858 4.89036 5.04516 5.11468 5.19895 5.20847 5.27351 5.32127 5.41758 5.43590 5.58324 5.65370 5.68746 5.80142 5.95341 6.10702 6.15895 6.39903 6.65571 6.88248 7.41890 8.92610 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.004721 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.574951 B = 5929.089989 C = 7676.303139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.210 3.790 10 N -0.536 5.536 11 C 0.089 3.911 12 C -0.120 4.120 13 C -0.128 4.128 14 C -0.065 4.065 15 C -0.127 4.127 16 C -0.125 4.125 17 C -0.129 4.129 18 C -0.124 4.124 19 C -0.131 4.131 20 C 0.087 3.913 21 C -0.155 4.155 22 C -0.193 4.193 23 C -0.148 4.148 24 H 0.263 0.737 25 H 0.017 0.983 26 H -0.043 1.043 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.017 0.983 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.469 -15.936 0.233 20.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.084 3.916 10 N -0.260 5.260 11 C -0.038 4.038 12 C -0.138 4.138 13 C -0.147 4.147 14 C -0.065 4.065 15 C -0.145 4.145 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.142 4.142 19 C -0.149 4.149 20 C -0.041 4.041 21 C -0.174 4.174 22 C -0.231 4.231 23 C -0.185 4.185 24 H 0.072 0.928 25 H 0.035 0.965 26 H -0.026 1.026 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.143 0.857 30 H 0.132 0.868 31 H 0.147 0.853 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.145 0.855 36 H 0.108 0.892 37 H 0.035 0.965 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.127 0.873 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.661 -15.686 -0.105 20.159 hybrid contribution -0.877 1.225 0.673 1.650 sum 11.785 -14.461 0.568 18.663 Atomic orbital electron populations 1.70075 1.07585 1.27706 1.52047 1.25837 0.95681 1.02886 0.95008 0.85469 0.78617 0.78685 0.78372 1.20014 1.20713 1.18997 1.21466 0.93433 0.91278 1.49564 0.92413 1.19388 0.90126 0.88646 0.93419 1.62098 1.30662 1.05212 1.28000 1.21019 0.94477 0.97837 0.90468 1.23244 0.93603 0.98907 0.98011 1.21712 0.92180 0.98588 1.02200 1.19208 0.93657 0.94342 0.99277 1.21508 0.92171 1.00482 1.00386 1.21403 0.99632 0.94047 0.99162 1.21557 0.97450 0.97106 0.98584 1.21396 0.92841 1.00122 0.99809 1.21521 1.00262 0.93519 0.99577 1.21696 0.96463 0.92865 0.93088 1.22169 0.96077 1.02820 0.96291 1.22999 0.93782 1.02920 1.03361 1.23041 1.01856 0.91903 1.01722 0.92801 0.96516 1.02570 0.95059 0.91729 0.85743 0.86835 0.85319 0.83811 0.83590 0.83846 0.85453 0.89228 0.96488 0.89258 0.89868 0.89486 0.87312 0.87377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 2 C 0.00 0.21 5.46 84.66 0.46 0.68 16 3 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.52 -30.01 8.60 25.60 0.22 -29.79 16 8 H 0.06 3.31 7.66 -2.91 -0.02 3.29 16 9 C 0.21 11.37 4.59 85.56 0.39 11.76 16 10 N -0.54 -23.46 4.37 -905.33 -3.96 -27.42 16 11 C 0.09 3.49 5.24 85.56 0.45 3.93 16 12 C -0.12 -3.76 8.60 24.54 0.21 -3.55 16 13 C -0.13 -3.82 9.52 23.66 0.23 -3.59 16 14 C -0.06 -1.71 5.87 -20.12 -0.12 -1.83 16 15 C -0.13 -2.95 9.79 22.52 0.22 -2.73 16 16 C -0.12 -2.35 10.03 22.23 0.22 -2.12 16 17 C -0.13 -2.24 10.04 22.32 0.22 -2.01 16 18 C -0.12 -2.36 10.03 22.23 0.22 -2.13 16 19 C -0.13 -3.07 9.40 22.52 0.21 -2.86 16 20 C 0.09 3.14 5.11 86.30 0.44 3.58 16 21 C -0.15 -5.36 4.97 -10.79 -0.05 -5.42 16 22 C -0.19 -6.28 9.98 30.62 0.31 -5.98 16 23 C -0.15 -3.79 10.26 30.62 0.31 -3.48 16 24 H 0.26 15.09 8.31 -92.71 -0.77 14.31 16 25 H 0.02 0.97 6.94 -2.39 -0.02 0.96 16 26 H -0.04 -2.55 8.00 -2.38 -0.02 -2.57 16 27 H 0.03 1.20 8.12 -2.39 -0.02 1.18 16 28 H 0.06 2.78 6.99 -2.39 -0.02 2.77 16 29 H 0.13 3.42 4.73 -2.91 -0.01 3.41 16 30 H 0.11 3.43 7.87 -2.91 -0.02 3.41 16 31 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.13 2.76 6.17 -2.91 -0.02 2.74 16 36 H 0.09 2.71 6.19 -2.38 -0.01 2.70 16 37 H 0.02 0.64 7.79 -2.39 -0.02 0.62 16 38 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 39 H 0.08 2.77 8.03 -2.39 -0.02 2.75 16 40 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 41 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -66.18 347.58 3.28 -62.90 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.98 Total: 19.47 kcal Atomic # 6 Polarization: -49.49 SS G_CDS: 3.95 Total: -45.54 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -3.68 Total: -83.98 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -66.18 3.28 -62.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176252816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.812 kcal (2) G-P(sol) polarization free energy of solvation -66.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds