Wall clock time and date at job start Mon Mar 30 2020 01:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99895 * 2 1 4 4 H 1.48501 * 109.47247 * 270.45577 * 3 2 1 5 5 H 1.48502 * 109.47010 * 30.45383 * 3 2 1 6 6 H 1.48494 * 109.47025 * 150.45423 * 3 2 1 7 7 C 1.38807 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99977 * 334.70960 * 7 2 1 9 9 N 1.36941 * 120.00344 * 154.71882 * 7 2 1 10 10 C 1.46500 * 119.99620 * 317.41522 * 9 7 2 11 11 C 1.50702 * 109.47282 * 264.08407 * 10 9 7 12 12 C 1.32569 * 119.99527 * 128.05198 * 11 10 9 13 13 C 1.47802 * 120.00538 * 8.58147 * 12 11 10 14 14 C 1.39535 * 120.14146 * 220.09479 * 13 12 11 15 15 C 1.37979 * 119.85476 * 179.67568 * 14 13 12 16 16 C 1.38342 * 120.14181 * 0.62033 * 15 14 13 17 17 C 1.38349 * 120.28731 * 359.67648 * 16 15 14 18 18 C 1.37972 * 120.13930 * 359.97438 * 17 16 15 19 19 C 1.46497 * 120.00303 * 137.41845 * 9 7 2 20 20 C 1.54962 * 110.92052 * 304.21007 * 19 9 7 21 21 C 1.54265 * 104.16025 * 156.29665 * 20 19 9 22 22 C 1.53880 * 106.63849 * 336.44834 * 21 20 19 23 23 C 1.54267 * 106.59729 * 359.97170 * 22 21 20 24 24 H 0.96993 * 120.00092 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47012 * 24.08772 * 10 9 7 26 26 H 1.08997 * 109.47031 * 144.07959 * 10 9 7 27 27 H 1.07989 * 119.99767 * 308.05240 * 11 10 9 28 28 H 1.08005 * 119.99437 * 188.57694 * 12 11 10 29 29 H 1.08003 * 120.07607 * 359.97438 * 14 13 12 30 30 H 1.08006 * 119.92940 * 180.31484 * 15 14 13 31 31 H 1.08004 * 119.85499 * 179.69840 * 16 15 14 32 32 H 1.07994 * 119.92741 * 180.02562 * 17 16 15 33 33 H 1.08003 * 120.07161 * 180.02562 * 18 17 16 34 34 H 1.09005 * 110.66958 * 180.91045 * 19 9 7 35 35 H 1.09003 * 110.47730 * 37.64582 * 20 19 9 36 36 H 1.09002 * 110.53465 * 274.97910 * 20 19 9 37 37 H 1.08997 * 110.03956 * 217.14051 * 21 20 19 38 38 H 1.09003 * 110.03483 * 95.75277 * 21 20 19 39 39 H 1.08997 * 110.03217 * 119.25978 * 22 21 20 40 40 H 1.09001 * 110.02946 * 240.63801 * 22 21 20 41 41 H 1.09001 * 110.48370 * 142.28773 * 23 22 21 42 42 H 1.08996 * 110.48610 * 264.79944 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4881 2.0521 -1.4000 5 1 1.4524 2.6499 0.7096 6 1 3.5525 1.4375 0.6904 7 6 2.0103 -1.2021 -0.0005 8 1 1.5479 -2.0928 0.3986 9 7 3.2813 -1.2587 -0.5070 10 6 3.6049 -0.5601 -1.7534 11 6 3.5089 -1.5231 -2.9086 12 6 2.7765 -1.2144 -3.9696 13 6 2.2098 0.1437 -4.1069 14 6 0.9160 0.3165 -4.6001 15 6 0.3904 1.5866 -4.7195 16 6 1.1478 2.6882 -4.3635 17 6 2.4335 2.5240 -3.8795 18 6 2.9681 1.2589 -3.7486 19 6 4.3174 -2.0179 0.1974 20 6 4.4613 -1.5308 1.6614 21 6 5.0723 -2.7380 2.4025 22 6 4.7115 -3.9880 1.5808 23 6 3.8929 -3.4975 0.3688 24 1 -0.4850 0.8400 -0.0004 25 1 2.9017 0.2591 -1.9038 26 1 4.6182 -0.1628 -1.6947 27 1 4.0367 -2.4645 -2.8720 28 1 2.5941 -1.9555 -4.7339 29 1 0.3256 -0.5423 -4.8833 30 1 -0.6128 1.7215 -5.0964 31 1 0.7335 3.6806 -4.4634 32 1 3.0194 3.3880 -3.6029 33 1 3.9718 1.1320 -3.3703 34 1 5.2700 -1.9476 -0.3278 35 1 3.4854 -1.2816 2.0781 36 1 5.1304 -0.6720 1.7147 37 1 4.6491 -2.8147 3.4040 38 1 6.1554 -2.6303 2.4623 39 1 5.6194 -4.4864 1.2412 40 1 4.1140 -4.6716 2.1840 41 1 4.1472 -4.0729 -0.5214 42 1 2.8251 -3.5686 0.5757 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217802590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:54 Heat of formation + Delta-G solvation = 41.824125 kcal Electronic energy + Delta-G solvation = -21289.247675 eV Core-core repulsion = 18427.043589 eV Total energy + Delta-G solvation = -2862.204087 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.28715 -39.30223 -36.77415 -34.88315 -33.30560 -31.87392 -30.51044 -29.38567 -28.55939 -27.45562 -24.53699 -23.35458 -23.03261 -21.07709 -20.89086 -20.16559 -18.54153 -17.31660 -17.07285 -16.82164 -16.38965 -16.01132 -15.85191 -15.26774 -14.77288 -14.64468 -14.48903 -14.20470 -14.07073 -13.76031 -13.45074 -13.27958 -13.07957 -12.55249 -12.34320 -12.16205 -12.10239 -11.93652 -11.85515 -11.79347 -11.77210 -11.42724 -11.19385 -11.08734 -10.57583 -10.40157 -9.68104 -9.05380 -8.54066 -8.14622 -5.53124 0.24125 0.56136 1.38598 1.44636 1.53983 1.60107 2.50562 2.98133 3.13799 3.46072 3.93983 3.99623 4.00082 4.04774 4.13755 4.22269 4.27941 4.35490 4.59797 4.60870 4.62880 4.65565 4.74112 4.78596 4.87166 4.90587 4.97590 5.11838 5.13418 5.15552 5.21742 5.27408 5.29696 5.49238 5.54027 5.59507 5.61637 5.64665 5.65481 5.78508 6.00778 6.04447 6.18925 6.32119 7.12378 7.73325 8.17193 9.04076 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.006790 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.998830 B = 4122.582699 C = 4630.589466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.230 1.230 5 H -0.322 1.322 6 H -0.270 1.270 7 C -0.244 4.244 8 H 0.034 0.966 9 N -0.598 5.598 10 C 0.137 3.863 11 C -0.137 4.137 12 C -0.146 4.146 13 C -0.058 4.058 14 C -0.127 4.127 15 C -0.128 4.128 16 C -0.137 4.137 17 C -0.131 4.131 18 C -0.122 4.122 19 C 0.161 3.839 20 C -0.136 4.136 21 C -0.114 4.114 22 C -0.113 4.113 23 C -0.131 4.131 24 H 0.258 0.742 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.119 0.881 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.713 -0.045 -6.667 11.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.154 1.154 5 H -0.252 1.252 6 H -0.195 1.195 7 C -0.374 4.374 8 H 0.051 0.949 9 N -0.319 5.319 10 C 0.014 3.986 11 C -0.158 4.158 12 C -0.166 4.166 13 C -0.058 4.058 14 C -0.145 4.145 15 C -0.145 4.145 16 C -0.155 4.155 17 C -0.148 4.148 18 C -0.140 4.140 19 C 0.056 3.944 20 C -0.176 4.176 21 C -0.152 4.152 22 C -0.151 4.151 23 C -0.170 4.170 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.137 0.863 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.591 0.052 -6.654 11.674 hybrid contribution -0.486 0.705 0.443 0.964 sum 9.106 0.758 -6.211 11.048 Atomic orbital electron populations 1.70041 1.07816 1.26973 1.53396 1.26012 0.95225 1.00524 0.97954 0.86433 0.78897 0.81322 0.80376 1.15427 1.25156 1.19524 1.18279 0.89626 0.92621 1.36876 0.94887 1.44210 1.07080 1.59788 1.20789 1.20938 0.99133 0.94239 0.84339 1.24081 0.97141 1.00913 0.93653 1.21669 1.00164 0.94596 1.00129 1.19272 0.94530 0.93872 0.98144 1.21448 0.94901 0.98067 1.00092 1.21342 1.00512 0.92414 1.00274 1.21449 0.94527 0.99729 0.99760 1.21315 0.96652 0.97316 0.99563 1.21462 1.00411 0.92564 0.99545 1.21689 0.90643 0.90670 0.91444 1.22691 0.99546 0.97700 0.97626 1.22028 1.00807 0.93977 0.98360 1.22026 0.99884 0.97212 0.95985 1.22628 0.99149 0.97221 0.98009 0.93346 0.90799 0.92612 0.86275 0.85141 0.85690 0.84184 0.83979 0.84696 0.85863 0.90114 0.94103 0.93035 0.92351 0.90224 0.90055 0.92295 0.92043 0.94514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.96 13.97 21.65 0.30 -58.66 16 2 C 0.00 0.02 5.15 84.86 0.44 0.46 16 3 Si 0.90 44.92 25.72 68.60 1.76 46.68 16 4 H -0.23 -10.29 4.24 99.48 0.42 -9.87 16 5 H -0.32 -16.88 7.11 99.48 0.71 -16.17 16 6 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.24 -13.64 8.25 84.03 0.69 -12.95 16 8 H 0.03 2.10 6.79 -2.91 -0.02 2.08 16 9 N -0.60 -27.39 2.01 -675.05 -1.36 -28.74 16 10 C 0.14 5.66 3.13 85.63 0.27 5.93 16 11 C -0.14 -5.00 9.77 24.53 0.24 -4.76 16 12 C -0.15 -5.12 9.78 23.65 0.23 -4.89 16 13 C -0.06 -2.14 5.05 -20.12 -0.10 -2.24 16 14 C -0.13 -4.47 9.79 22.52 0.22 -4.25 16 15 C -0.13 -4.05 10.03 22.23 0.22 -3.83 16 16 C -0.14 -4.18 10.04 22.32 0.22 -3.95 16 17 C -0.13 -4.21 8.87 22.23 0.20 -4.01 16 18 C -0.12 -4.28 6.46 22.52 0.15 -4.14 16 19 C 0.16 6.15 3.42 46.31 0.16 6.31 16 20 C -0.14 -5.11 6.37 31.69 0.20 -4.91 16 21 C -0.11 -3.26 6.80 31.32 0.21 -3.05 16 22 C -0.11 -3.16 6.80 31.32 0.21 -2.94 16 23 C -0.13 -4.64 6.37 31.67 0.20 -4.43 16 24 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 25 H 0.07 3.30 1.48 -2.38 0.00 3.30 16 26 H 0.06 2.06 7.93 -2.39 -0.02 2.04 16 27 H 0.12 3.88 8.06 -2.92 -0.02 3.85 16 28 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 29 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 32 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.12 4.08 6.59 -2.91 -0.02 4.06 16 34 H 0.08 2.68 7.94 -2.38 -0.02 2.66 16 35 H 0.04 1.84 7.18 -2.39 -0.02 1.83 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.04 1.58 6.51 -2.39 -0.02 1.56 16 Total: -1.00 -66.71 326.16 5.17 -61.54 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.69 Total: 26.85 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 3.77 Total: -47.67 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -1.05 Total: -87.41 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.76 Total: 46.68 kcal Total: -66.71 5.17 -61.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217802590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.366 kcal (2) G-P(sol) polarization free energy of solvation -66.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds