Wall clock time and date at job start Mon Mar 30 2020 01:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 C 1.29824 * 118.35218 * 94.73548 * 11 10 9 13 13 C 1.50309 * 122.89362 * 180.15093 * 12 11 10 14 14 C 1.53087 * 109.76607 * 343.94473 * 13 12 11 15 15 N 1.47243 * 108.47467 * 48.77388 * 14 13 12 16 16 C 1.46902 * 110.99918 * 54.57952 * 15 14 13 17 17 C 1.50702 * 109.46755 * 67.07336 * 16 15 14 18 18 C 1.38241 * 119.99931 * 269.72092 * 17 16 15 19 19 C 1.38234 * 119.99644 * 179.81011 * 18 17 16 20 20 C 1.38230 * 120.00302 * 0.42347 * 19 18 17 21 21 C 1.38237 * 120.00058 * 359.81242 * 20 19 18 22 22 C 1.38231 * 120.00167 * 90.00468 * 17 16 15 23 23 C 1.46847 * 110.20538 * 291.19749 * 15 14 13 24 24 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.08002 * 118.55954 * 0.39522 * 12 11 10 30 30 H 1.08994 * 109.56350 * 223.75810 * 13 12 11 31 31 H 1.08996 * 109.20927 * 103.91055 * 13 12 11 32 32 H 1.08997 * 109.64080 * 289.07713 * 14 13 12 33 33 H 1.09002 * 109.63805 * 168.46741 * 14 13 12 34 34 H 1.09003 * 109.47286 * 187.07442 * 16 15 14 35 35 H 1.09000 * 109.47328 * 307.07352 * 16 15 14 36 36 H 1.08002 * 119.99602 * 0.02562 * 18 17 16 37 37 H 1.08005 * 119.99313 * 180.21217 * 19 18 17 38 38 H 1.07997 * 120.00143 * 179.78394 * 20 19 18 39 39 H 1.07998 * 120.00007 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.00181 * 359.97339 * 22 17 16 41 41 H 1.09001 * 109.33056 * 290.67811 * 23 15 14 42 42 H 1.08994 * 109.33747 * 171.17303 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5285 -2.6368 0.0001 12 6 6.1450 -2.7310 1.1388 13 6 7.6433 -2.7376 1.2577 14 6 8.2700 -3.0211 -0.1100 15 7 7.6422 -2.1343 -1.1037 16 6 7.7427 -0.7277 -0.6921 17 6 9.1868 -0.2977 -0.7217 18 6 9.9730 -0.4378 0.4067 19 6 11.2986 -0.0470 0.3783 20 6 11.8357 0.4920 -0.7757 21 6 11.0483 0.6366 -1.9026 22 6 9.7236 0.2422 -1.8754 23 6 6.2417 -2.5216 -1.3160 24 1 -0.4849 0.8402 0.0004 25 1 3.8751 -0.6798 0.8895 26 1 3.8745 -0.6809 -0.8904 27 1 3.6584 -3.1503 0.8903 28 1 3.6578 -3.1507 -0.8897 29 1 5.5553 -2.8121 2.0400 30 1 7.9500 -3.5090 1.9640 31 1 7.9789 -1.7643 1.6155 32 1 8.0948 -4.0612 -0.3847 33 1 9.3415 -2.8253 -0.0696 34 1 7.1645 -0.1067 -1.3763 35 1 7.3510 -0.6161 0.3190 36 1 9.5523 -0.8558 1.3094 37 1 11.9137 -0.1597 1.2589 38 1 12.8705 0.8005 -0.7968 39 1 11.4678 1.0581 -2.8041 40 1 9.1083 0.3555 -2.7558 41 1 6.2069 -3.4819 -1.8306 42 1 5.7479 -1.7681 -1.9295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260186012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:56 Heat of formation + Delta-G solvation = 34.145334 kcal Electronic energy + Delta-G solvation = -20511.957405 eV Core-core repulsion = 17649.420340 eV Total energy + Delta-G solvation = -2862.537064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.17744 -38.64816 -34.85754 -32.91985 -31.85306 -31.26772 -30.86881 -29.30866 -26.67771 -25.23606 -23.46145 -22.63496 -22.40693 -20.94856 -20.12144 -17.55477 -16.86991 -16.78014 -15.81055 -15.52949 -15.35169 -14.64740 -14.29747 -14.20599 -13.97079 -13.43440 -13.35508 -12.89594 -12.69963 -12.62653 -12.37807 -12.24427 -12.04848 -11.62072 -11.48091 -11.25619 -11.05666 -10.94687 -10.90169 -10.64512 -10.12705 -9.95714 -9.67784 -9.20341 -8.99152 -8.86039 -8.55527 -8.31649 -8.14482 -6.05932 -4.04012 1.25918 1.32795 2.55875 3.29065 3.36817 3.40774 3.62936 4.20521 4.43778 4.71045 4.76574 4.90359 4.99094 5.01734 5.09401 5.23264 5.28612 5.30005 5.35168 5.41937 5.54444 5.66533 5.68872 5.76306 5.87382 5.92542 5.96435 5.98326 6.05824 6.17103 6.30950 6.37712 6.41867 6.49569 6.59014 6.72217 6.90857 6.95538 7.07334 7.08983 7.26482 7.28137 7.52176 7.77907 8.52185 8.98996 9.56733 11.07573 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020753 B = 0.004642 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.884811 B = 6031.042251 C = 6821.946669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.003 4.003 10 C -0.072 4.072 11 C -0.134 4.134 12 C -0.183 4.183 13 C -0.124 4.124 14 C 0.050 3.950 15 N -0.521 5.521 16 C 0.080 3.920 17 C -0.067 4.067 18 C -0.117 4.117 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.101 4.101 23 C 0.085 3.915 24 H 0.263 0.737 25 H 0.014 0.986 26 H 0.010 0.990 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.087 0.913 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.357 -1.991 -0.937 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.041 4.041 10 C -0.110 4.110 11 C -0.135 4.135 12 C -0.201 4.201 13 C -0.162 4.162 14 C -0.078 4.078 15 N -0.242 5.242 16 C -0.047 4.047 17 C -0.068 4.068 18 C -0.135 4.135 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.119 4.119 23 C -0.042 4.042 24 H 0.073 0.927 25 H 0.032 0.968 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.105 0.895 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 23.444 -1.926 -1.413 23.566 hybrid contribution -0.209 1.038 0.907 1.394 sum 23.235 -0.888 -0.506 23.258 Atomic orbital electron populations 1.69920 1.06288 1.26871 1.51175 1.25018 0.94707 0.99118 0.94552 0.86802 0.80407 0.83704 0.78560 1.20222 1.21357 1.19047 1.21163 0.89492 0.94475 1.50803 0.91023 1.19503 0.96832 0.91581 0.96144 1.20665 0.88670 1.00085 1.01628 1.22001 0.97939 0.98137 0.95453 1.21883 0.94904 1.05496 0.97839 1.21072 0.94260 1.01853 0.98998 1.22266 0.98793 0.97308 0.89461 1.62827 1.15436 1.01935 1.44014 1.21189 0.92385 0.89833 1.01327 1.19813 0.95633 0.97719 0.93597 1.21174 0.94051 1.00128 0.98184 1.21097 0.95353 0.99524 0.98119 1.21107 0.99657 1.00191 0.93493 1.21140 0.94218 1.00371 0.98327 1.21072 0.95218 0.98008 0.97617 1.21106 0.86139 1.02245 0.94731 0.92733 0.96795 0.97185 0.92241 0.92047 0.87719 0.91067 0.91188 0.90659 0.90508 0.89878 0.92493 0.86182 0.86338 0.86445 0.86265 0.85951 0.89483 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C 0.00 -0.08 4.02 -27.88 -0.11 -0.19 16 10 C -0.07 -1.44 5.19 -27.88 -0.14 -1.58 16 11 C -0.13 -2.21 4.80 -101.01 -0.48 -2.69 16 12 C -0.18 -2.80 8.90 -35.88 -0.32 -3.12 16 13 C -0.12 -1.52 5.42 -28.03 -0.15 -1.67 16 14 C 0.05 0.60 5.49 -3.59 -0.02 0.58 16 15 N -0.52 -6.99 5.01 -237.55 -1.19 -8.18 16 16 C 0.08 1.08 4.56 -4.97 -0.02 1.06 16 17 C -0.07 -0.82 4.91 -104.62 -0.51 -1.33 16 18 C -0.12 -1.30 8.07 -39.58 -0.32 -1.62 16 19 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 20 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 21 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 22 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 23 C 0.09 1.25 5.65 -5.28 -0.03 1.22 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 26 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 27 H 0.06 1.20 7.84 -51.93 -0.41 0.79 16 28 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 29 H 0.10 1.67 7.81 -52.49 -0.41 1.26 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.85 4.72 -51.93 -0.24 0.60 16 32 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.08 0.87 6.56 -51.93 -0.34 0.53 16 34 H 0.08 1.16 7.84 -51.93 -0.41 0.76 16 35 H 0.06 0.84 5.40 -51.93 -0.28 0.56 16 36 H 0.12 1.24 5.94 -52.49 -0.31 0.93 16 37 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 41 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.36 7.88 -51.93 -0.41 0.95 16 LS Contribution 328.94 15.07 4.96 4.96 Total: -1.00 -30.77 328.94 -10.80 -41.56 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.54 Total: 0.80 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -4.12 Total: -29.13 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.42 Total: -35.47 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.77 -10.80 -41.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260186012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.708 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds