Wall clock time and date at job start Mon Mar 30 2020 01:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 C 1.29824 * 118.35218 * 94.73548 * 11 10 9 13 13 C 1.50309 * 122.89362 * 180.15093 * 12 11 10 14 14 C 1.53087 * 109.76607 * 343.94473 * 13 12 11 15 15 N 1.47243 * 108.47467 * 48.77388 * 14 13 12 16 16 C 1.46902 * 110.99918 * 54.57952 * 15 14 13 17 17 C 1.50702 * 109.46755 * 67.07336 * 16 15 14 18 18 C 1.38241 * 119.99931 * 269.72092 * 17 16 15 19 19 C 1.38234 * 119.99644 * 179.81011 * 18 17 16 20 20 C 1.38230 * 120.00302 * 0.42347 * 19 18 17 21 21 C 1.38237 * 120.00058 * 359.81242 * 20 19 18 22 22 C 1.38231 * 120.00167 * 90.00468 * 17 16 15 23 23 C 1.46847 * 110.20538 * 291.19749 * 15 14 13 24 24 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.08002 * 118.55954 * 0.39522 * 12 11 10 30 30 H 1.08994 * 109.56350 * 223.75810 * 13 12 11 31 31 H 1.08996 * 109.20927 * 103.91055 * 13 12 11 32 32 H 1.08997 * 109.64080 * 289.07713 * 14 13 12 33 33 H 1.09002 * 109.63805 * 168.46741 * 14 13 12 34 34 H 1.09003 * 109.47286 * 187.07442 * 16 15 14 35 35 H 1.09000 * 109.47328 * 307.07352 * 16 15 14 36 36 H 1.08002 * 119.99602 * 0.02562 * 18 17 16 37 37 H 1.08005 * 119.99313 * 180.21217 * 19 18 17 38 38 H 1.07997 * 120.00143 * 179.78394 * 20 19 18 39 39 H 1.07998 * 120.00007 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.00181 * 359.97339 * 22 17 16 41 41 H 1.09001 * 109.33056 * 290.67811 * 23 15 14 42 42 H 1.08994 * 109.33747 * 171.17303 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5285 -2.6368 0.0001 12 6 6.1450 -2.7310 1.1388 13 6 7.6433 -2.7376 1.2577 14 6 8.2700 -3.0211 -0.1100 15 7 7.6422 -2.1343 -1.1037 16 6 7.7427 -0.7277 -0.6921 17 6 9.1868 -0.2977 -0.7217 18 6 9.9730 -0.4378 0.4067 19 6 11.2986 -0.0470 0.3783 20 6 11.8357 0.4920 -0.7757 21 6 11.0483 0.6366 -1.9026 22 6 9.7236 0.2422 -1.8754 23 6 6.2417 -2.5216 -1.3160 24 1 -0.4849 0.8402 0.0004 25 1 3.8751 -0.6798 0.8895 26 1 3.8745 -0.6809 -0.8904 27 1 3.6584 -3.1503 0.8903 28 1 3.6578 -3.1507 -0.8897 29 1 5.5553 -2.8121 2.0400 30 1 7.9500 -3.5090 1.9640 31 1 7.9789 -1.7643 1.6155 32 1 8.0948 -4.0612 -0.3847 33 1 9.3415 -2.8253 -0.0696 34 1 7.1645 -0.1067 -1.3763 35 1 7.3510 -0.6161 0.3190 36 1 9.5523 -0.8558 1.3094 37 1 11.9137 -0.1597 1.2589 38 1 12.8705 0.8005 -0.7968 39 1 11.4678 1.0581 -2.8041 40 1 9.1083 0.3555 -2.7558 41 1 6.2069 -3.4819 -1.8306 42 1 5.7479 -1.7681 -1.9295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260186012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:55 Heat of formation + Delta-G solvation = 17.168583 kcal Electronic energy + Delta-G solvation = -20512.693572 eV Core-core repulsion = 17649.420340 eV Total energy + Delta-G solvation = -2863.273231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.18147 -39.54874 -36.40820 -34.68198 -33.25355 -32.20751 -31.70028 -30.89656 -27.63537 -26.98459 -24.62207 -23.65151 -23.36369 -22.34538 -21.42693 -19.12890 -18.51416 -17.62947 -16.95585 -16.49747 -16.39883 -16.21794 -15.65548 -15.37407 -15.13091 -14.72896 -14.67163 -14.26127 -14.04033 -13.74352 -13.50271 -13.41113 -13.29698 -13.08135 -12.86542 -12.56461 -12.33930 -12.12597 -11.93921 -11.86613 -11.73296 -11.66681 -11.54139 -11.21668 -10.80564 -9.76037 -9.70227 -9.60889 -9.20420 -8.33699 -6.37842 0.47338 0.56204 1.28050 1.30917 1.32862 1.44648 2.31557 2.79054 3.01526 3.23524 3.76172 3.85980 3.98145 4.04033 4.07289 4.21330 4.26790 4.34057 4.39352 4.49818 4.56592 4.60539 4.64173 4.70676 4.77478 4.80294 4.83585 4.91294 4.98991 5.02921 5.12044 5.18151 5.22903 5.38471 5.44877 5.56326 5.62081 5.67069 5.68343 5.76910 5.97614 6.07182 6.15519 6.19807 6.24571 6.69929 7.27017 8.83247 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020753 B = 0.004642 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.884811 B = 6031.042251 C = 6821.946669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.535 4.535 8 H 0.032 0.968 9 C 0.004 3.996 10 C -0.064 4.064 11 C -0.148 4.148 12 C -0.171 4.171 13 C -0.118 4.118 14 C 0.053 3.947 15 N -0.520 5.520 16 C 0.084 3.916 17 C -0.082 4.082 18 C -0.126 4.126 19 C -0.126 4.126 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.117 4.117 23 C 0.090 3.910 24 H 0.267 0.733 25 H 0.010 0.990 26 H 0.016 0.984 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.125 0.875 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.923 -1.212 -0.716 26.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.176 1.176 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.033 4.033 10 C -0.103 4.103 11 C -0.150 4.150 12 C -0.189 4.189 13 C -0.156 4.156 14 C -0.075 4.075 15 N -0.241 5.241 16 C -0.043 4.043 17 C -0.083 4.083 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.145 4.145 22 C -0.135 4.135 23 C -0.037 4.037 24 H 0.076 0.924 25 H 0.028 0.972 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.143 0.857 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.140 0.860 41 H 0.116 0.884 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 27.026 -1.164 -1.193 27.077 hybrid contribution -1.340 0.726 0.878 1.758 sum 25.686 -0.439 -0.315 25.692 Atomic orbital electron populations 1.70069 1.08218 1.28188 1.52570 1.25978 0.95581 1.03363 0.94059 0.85695 0.79351 0.78491 0.79376 1.18837 1.20715 1.17587 1.21517 0.92101 0.93158 1.50473 0.94918 1.19383 0.93567 0.94385 0.95958 1.20466 0.91494 0.97303 1.00992 1.21808 0.95659 1.00492 0.97019 1.22123 0.96869 1.03030 0.96923 1.21098 0.91695 1.02974 0.99874 1.22315 0.99210 0.97255 0.88732 1.62861 1.14266 1.02229 1.44702 1.21104 0.93450 0.89716 1.00054 1.19750 0.94933 0.99057 0.94556 1.21290 0.94672 1.00532 0.97955 1.21408 0.95044 0.98759 0.99149 1.21468 1.00826 0.99226 0.93008 1.21418 0.93678 0.99925 0.99470 1.21203 0.96138 0.98646 0.97538 1.21037 0.86733 1.02448 0.93529 0.92409 0.97154 0.96561 0.93290 0.92412 0.88629 0.88858 0.90558 0.90095 0.89332 0.91075 0.93836 0.85703 0.84119 0.83947 0.84346 0.86042 0.88432 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 2 C 0.01 0.42 5.47 84.65 0.46 0.89 16 3 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 7 C -0.53 -31.63 9.66 25.60 0.25 -31.39 16 8 H 0.03 2.12 7.99 -2.91 -0.02 2.09 16 9 C 0.00 0.21 4.02 29.85 0.12 0.33 16 10 C -0.06 -2.60 5.19 29.85 0.15 -2.45 16 11 C -0.15 -4.80 4.80 -15.45 -0.07 -4.87 16 12 C -0.17 -5.02 8.90 26.74 0.24 -4.78 16 13 C -0.12 -2.61 5.42 29.75 0.16 -2.45 16 14 C 0.05 1.13 5.49 86.27 0.47 1.61 16 15 N -0.52 -13.17 5.01 -905.48 -4.54 -17.71 16 16 C 0.08 2.19 4.56 85.56 0.39 2.58 16 17 C -0.08 -1.88 4.91 -19.86 -0.10 -1.98 16 18 C -0.13 -2.51 8.07 22.27 0.18 -2.33 16 19 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 20 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 21 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 22 C -0.12 -2.49 9.70 22.27 0.22 -2.28 16 23 C 0.09 2.57 5.65 85.39 0.48 3.06 16 24 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 25 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 26 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 27 H 0.05 2.03 7.84 -2.39 -0.02 2.01 16 28 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 29 H 0.10 2.97 7.81 -2.91 -0.02 2.94 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 1.66 4.72 -2.39 -0.01 1.64 16 32 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 33 H 0.09 1.75 6.56 -2.39 -0.02 1.73 16 34 H 0.07 1.98 7.84 -2.39 -0.02 1.96 16 35 H 0.04 1.23 5.40 -2.39 -0.01 1.22 16 36 H 0.13 2.27 5.94 -2.91 -0.02 2.25 16 37 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.08 2.34 7.88 -2.39 -0.02 2.32 16 Total: -1.00 -67.19 328.94 2.20 -65.00 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.93 Total: 15.43 kcal Atomic # 6 Polarization: -53.32 SS G_CDS: 3.63 Total: -49.69 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -4.24 Total: -77.97 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -67.19 2.20 -65.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260186012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.166 kcal (2) G-P(sol) polarization free energy of solvation -67.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds