Wall clock time and date at job start Mon Mar 30 2020 01:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 120.00160 * 2 1 4 4 H 1.48495 * 109.46743 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46915 * 119.99808 * 3 2 1 6 6 H 1.48501 * 109.47002 * 239.99726 * 3 2 1 7 7 C 1.38815 * 119.99485 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99521 * 206.90700 * 7 2 1 9 9 N 1.36935 * 120.00077 * 26.91836 * 7 2 1 10 10 C 1.48677 * 127.81510 * 12.90223 * 9 7 2 11 11 C 1.55003 * 106.86960 * 154.11839 * 10 9 7 12 12 H 1.08994 * 110.54908 * 238.93551 * 11 10 9 13 13 C 1.50700 * 110.54660 * 116.27102 * 11 10 9 14 14 C 1.38242 * 119.99529 * 133.17537 * 13 11 10 15 15 C 1.38234 * 119.99480 * 179.78738 * 14 13 11 16 16 C 1.38238 * 120.00397 * 0.46427 * 15 14 13 17 17 C 1.38232 * 119.99771 * 359.76780 * 16 15 14 18 18 C 1.38228 * 120.00243 * 313.44659 * 13 11 10 19 19 C 1.52979 * 103.87109 * 357.67484 * 11 10 9 20 20 H 1.08995 * 110.36837 * 269.58441 * 19 11 10 21 21 C 1.51771 * 115.96365 * 143.20906 * 19 11 10 22 22 C 1.53734 * 107.27431 * 182.81865 * 21 19 11 23 23 C 1.52568 * 111.47787 * 57.79068 * 22 21 19 24 24 C 1.53757 * 111.44049 * 305.25818 * 23 22 21 25 25 C 1.46217 * 127.80888 * 192.58599 * 9 7 2 26 26 H 1.09003 * 109.87327 * 106.71151 * 25 9 7 27 27 H 0.96998 * 119.99908 * 186.25521 * 1 2 3 28 28 H 1.09006 * 109.98363 * 273.47042 * 10 9 7 29 29 H 1.09000 * 109.98336 * 34.75813 * 10 9 7 30 30 H 1.07995 * 120.00003 * 359.97438 * 14 13 11 31 31 H 1.07997 * 119.99915 * 180.25319 * 15 14 13 32 32 H 1.07999 * 120.00356 * 179.79252 * 16 15 14 33 33 H 1.07998 * 120.00043 * 180.02562 * 17 16 15 34 34 H 1.07999 * 120.00394 * 359.97438 * 18 13 11 35 35 H 1.09008 * 109.89670 * 302.26575 * 21 19 11 36 36 H 1.09002 * 109.89401 * 63.30238 * 21 19 11 37 37 H 1.09003 * 109.07734 * 178.30724 * 22 21 19 38 38 H 1.08999 * 109.07362 * 297.34296 * 22 21 19 39 39 H 1.08999 * 109.08751 * 65.76373 * 23 22 21 40 40 H 1.09000 * 109.08393 * 184.76191 * 23 22 21 41 41 H 1.08995 * 109.89238 * 177.01538 * 24 23 22 42 42 H 1.09003 * 109.89040 * 298.04641 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1041 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0025 -1.2527 0.4239 9 7 1.4367 -2.3241 -0.5358 10 6 0.2201 -2.4082 -1.3862 11 6 0.3579 -3.6926 -2.2428 12 1 0.3318 -3.4488 -3.3048 13 6 -0.7313 -4.6762 -1.9005 14 6 -1.4429 -5.2982 -2.9093 15 6 -2.4391 -6.2037 -2.5953 16 6 -2.7302 -6.4800 -1.2725 17 6 -2.0218 -5.8545 -0.2637 18 6 -1.0226 -4.9522 -0.5777 19 6 1.7274 -4.2500 -1.8503 20 1 2.5018 -3.8491 -2.5043 21 6 1.8324 -5.7622 -1.7740 22 6 3.2555 -6.0976 -1.2989 23 6 3.5621 -5.4496 0.0479 24 6 3.3253 -3.9309 0.0077 25 6 1.8861 -3.7095 -0.4070 26 1 1.2225 -4.2533 0.2654 27 1 -0.4850 -0.8350 0.0915 28 1 -0.6691 -2.4726 -0.7589 29 1 0.1569 -1.5336 -2.0336 30 1 -1.2186 -5.0789 -3.9427 31 1 -2.9923 -6.6927 -3.3834 32 1 -3.5107 -7.1850 -1.0271 33 1 -2.2489 -6.0706 0.7698 34 1 -0.4693 -4.4633 0.2105 35 1 1.1028 -6.1492 -1.0625 36 1 1.6567 -6.1963 -2.7582 37 1 3.3539 -7.1791 -1.2046 38 1 3.9717 -5.7379 -2.0376 39 1 2.9196 -5.8904 0.8101 40 1 4.6035 -5.6411 0.3066 41 1 3.5004 -3.5020 0.9943 42 1 3.9931 -3.4705 -0.7205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275046822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:16 Heat of formation + Delta-G solvation = 35.396271 kcal Electronic energy + Delta-G solvation = -21799.160191 eV Core-core repulsion = 18936.677371 eV Total energy + Delta-G solvation = -2862.482820 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22770 -38.08668 -35.11872 -33.23412 -31.22858 -30.61050 -29.79620 -27.87774 -27.45047 -24.46312 -22.36312 -22.01862 -21.91951 -20.67738 -19.57273 -19.01093 -17.17204 -16.37945 -15.16012 -15.00965 -14.37429 -14.33979 -14.09290 -13.90878 -13.55644 -13.20891 -13.12793 -13.00879 -12.39896 -12.33396 -12.13504 -11.67660 -11.44284 -11.23418 -10.87578 -10.68781 -10.64289 -10.50304 -10.33948 -10.20810 -10.06830 -9.86257 -9.77845 -9.46542 -9.30968 -8.62199 -8.38559 -8.27233 -6.92408 -6.04597 -3.04513 1.66016 1.68285 3.52202 3.56692 3.74141 4.07251 4.60863 4.88393 5.04303 5.11554 5.17086 5.17780 5.25595 5.38245 5.40357 5.53420 5.67731 5.73345 5.75602 5.79862 5.83068 5.88235 5.97528 6.01142 6.09300 6.11301 6.24098 6.31221 6.33266 6.44681 6.49785 6.55730 6.64727 6.67185 6.70956 6.77500 6.86238 6.96655 7.06160 7.13393 7.17664 7.30927 7.79848 8.49390 9.06639 9.86513 10.49154 11.30602 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017474 B = 0.007149 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.960728 B = 3915.816552 C = 4961.409783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.028 4.028 3 Si 1.060 2.940 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.326 4.326 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.150 3.850 11 C -0.069 4.069 12 H 0.074 0.926 13 C -0.048 4.048 14 C -0.123 4.123 15 C -0.124 4.124 16 C -0.135 4.135 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.097 4.097 20 H 0.073 0.927 21 C -0.104 4.104 22 C -0.115 4.115 23 C -0.114 4.114 24 C -0.110 4.110 25 C 0.161 3.839 26 H 0.029 0.971 27 H 0.268 0.732 28 H 0.031 0.969 29 H 0.052 0.948 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 -13.879 -4.002 14.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.229 4.229 3 Si 0.890 3.110 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.223 1.223 7 C -0.453 4.453 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.025 3.975 11 C -0.088 4.088 12 H 0.092 0.908 13 C -0.048 4.048 14 C -0.141 4.141 15 C -0.142 4.142 16 C -0.153 4.153 17 C -0.139 4.139 18 C -0.128 4.128 19 C -0.117 4.117 20 H 0.091 0.909 21 C -0.142 4.142 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.148 4.148 25 C 0.053 3.947 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.147 0.853 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.053 -12.075 -3.998 12.720 hybrid contribution 0.135 -1.650 0.083 1.657 sum 0.187 -13.725 -3.915 14.274 Atomic orbital electron populations 1.70768 1.06592 1.30262 1.48689 1.25643 0.96497 1.00773 0.99957 0.83584 0.74844 0.76467 0.76061 1.21160 1.22144 1.22267 1.19706 0.99097 0.87495 1.38996 0.91365 1.44615 1.29670 1.01039 1.56584 1.21831 0.90241 0.93465 0.91997 1.21059 0.92589 0.95143 1.00044 0.90797 1.19847 0.95746 0.96094 0.93100 1.21026 0.96695 0.97619 0.98795 1.21016 0.98214 0.98719 0.96237 1.21018 1.00348 1.00834 0.93094 1.21123 0.96462 0.97386 0.98972 1.21322 0.97341 0.97421 0.96744 1.22018 0.95678 0.94326 0.99715 0.90860 1.21423 0.96464 0.95824 1.00522 1.21522 0.97145 0.99250 0.97318 1.21519 1.00432 0.96184 0.97094 1.21359 0.97651 0.94155 1.01624 1.20895 0.93654 0.87069 0.93051 0.95425 0.92011 0.95105 0.92962 0.86565 0.86722 0.86804 0.86584 0.85313 0.91679 0.92720 0.92822 0.92544 0.92621 0.92679 0.92061 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.04 12.86 55.49 0.71 -27.33 16 2 C -0.03 -0.79 5.17 -17.43 -0.09 -0.88 16 3 Si 1.06 25.58 30.00 -169.99 -5.10 20.48 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.33 -9.06 9.75 -15.06 -0.15 -9.21 16 8 H 0.07 1.88 7.55 -52.49 -0.40 1.49 16 9 N -0.59 -14.79 3.24 -162.63 -0.53 -15.31 16 10 C 0.15 3.50 4.53 -1.78 -0.01 3.49 16 11 C -0.07 -1.27 3.26 -90.72 -0.30 -1.57 16 12 H 0.07 1.29 7.97 -51.93 -0.41 0.88 16 13 C -0.05 -0.79 3.60 -104.62 -0.38 -1.17 16 14 C -0.12 -1.80 9.68 -39.58 -0.38 -2.18 16 15 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 16 C -0.13 -1.77 10.05 -39.58 -0.40 -2.16 16 17 C -0.12 -1.77 10.05 -39.58 -0.40 -2.16 16 18 C -0.11 -1.87 6.90 -39.58 -0.27 -2.14 16 19 C -0.10 -1.72 2.36 -90.23 -0.21 -1.94 16 20 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 21 C -0.10 -1.55 4.76 -26.97 -0.13 -1.68 16 22 C -0.11 -1.55 5.85 -26.57 -0.16 -1.71 16 23 C -0.11 -1.66 5.85 -26.56 -0.16 -1.82 16 24 C -0.11 -2.01 5.06 -27.15 -0.14 -2.15 16 25 C 0.16 3.26 2.36 -67.87 -0.16 3.10 16 26 H 0.03 0.59 5.38 -51.93 -0.28 0.31 16 27 H 0.27 8.18 5.99 -40.82 -0.24 7.94 16 28 H 0.03 0.77 5.80 -51.93 -0.30 0.47 16 29 H 0.05 1.35 7.74 -51.93 -0.40 0.95 16 30 H 0.12 1.50 8.00 -52.49 -0.42 1.08 16 31 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.13 2.43 5.23 -52.49 -0.27 2.15 16 35 H 0.06 1.01 6.22 -51.92 -0.32 0.69 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 42 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -30.19 315.70 -10.36 -40.55 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.49 Total: 3.05 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -3.72 Total: -26.19 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.19 Total: -42.64 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.10 Total: 20.48 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.19 -10.36 -40.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275046822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.948 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds