Wall clock time and date at job start Mon Mar 30 2020 01:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 120.00160 * 2 1 4 4 H 1.48495 * 109.46743 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46915 * 119.99808 * 3 2 1 6 6 H 1.48501 * 109.47002 * 239.99726 * 3 2 1 7 7 C 1.38815 * 119.99485 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99521 * 206.90700 * 7 2 1 9 9 N 1.36935 * 120.00077 * 26.91836 * 7 2 1 10 10 C 1.48677 * 127.81510 * 12.90223 * 9 7 2 11 11 C 1.55003 * 106.86960 * 154.11839 * 10 9 7 12 12 H 1.08994 * 110.54908 * 238.93551 * 11 10 9 13 13 C 1.50700 * 110.54660 * 116.27102 * 11 10 9 14 14 C 1.38242 * 119.99529 * 133.17537 * 13 11 10 15 15 C 1.38234 * 119.99480 * 179.78738 * 14 13 11 16 16 C 1.38238 * 120.00397 * 0.46427 * 15 14 13 17 17 C 1.38232 * 119.99771 * 359.76780 * 16 15 14 18 18 C 1.38228 * 120.00243 * 313.44659 * 13 11 10 19 19 C 1.52979 * 103.87109 * 357.67484 * 11 10 9 20 20 H 1.08995 * 110.36837 * 269.58441 * 19 11 10 21 21 C 1.51771 * 115.96365 * 143.20906 * 19 11 10 22 22 C 1.53734 * 107.27431 * 182.81865 * 21 19 11 23 23 C 1.52568 * 111.47787 * 57.79068 * 22 21 19 24 24 C 1.53757 * 111.44049 * 305.25818 * 23 22 21 25 25 C 1.46217 * 127.80888 * 192.58599 * 9 7 2 26 26 H 1.09003 * 109.87327 * 106.71151 * 25 9 7 27 27 H 0.96998 * 119.99908 * 186.25521 * 1 2 3 28 28 H 1.09006 * 109.98363 * 273.47042 * 10 9 7 29 29 H 1.09000 * 109.98336 * 34.75813 * 10 9 7 30 30 H 1.07995 * 120.00003 * 359.97438 * 14 13 11 31 31 H 1.07997 * 119.99915 * 180.25319 * 15 14 13 32 32 H 1.07999 * 120.00356 * 179.79252 * 16 15 14 33 33 H 1.07998 * 120.00043 * 180.02562 * 17 16 15 34 34 H 1.07999 * 120.00394 * 359.97438 * 18 13 11 35 35 H 1.09008 * 109.89670 * 302.26575 * 21 19 11 36 36 H 1.09002 * 109.89401 * 63.30238 * 21 19 11 37 37 H 1.09003 * 109.07734 * 178.30724 * 22 21 19 38 38 H 1.08999 * 109.07362 * 297.34296 * 22 21 19 39 39 H 1.08999 * 109.08751 * 65.76373 * 23 22 21 40 40 H 1.09000 * 109.08393 * 184.76191 * 23 22 21 41 41 H 1.08995 * 109.89238 * 177.01538 * 24 23 22 42 42 H 1.09003 * 109.89040 * 298.04641 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1041 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0025 -1.2527 0.4239 9 7 1.4367 -2.3241 -0.5358 10 6 0.2201 -2.4082 -1.3862 11 6 0.3579 -3.6926 -2.2428 12 1 0.3318 -3.4488 -3.3048 13 6 -0.7313 -4.6762 -1.9005 14 6 -1.4429 -5.2982 -2.9093 15 6 -2.4391 -6.2037 -2.5953 16 6 -2.7302 -6.4800 -1.2725 17 6 -2.0218 -5.8545 -0.2637 18 6 -1.0226 -4.9522 -0.5777 19 6 1.7274 -4.2500 -1.8503 20 1 2.5018 -3.8491 -2.5043 21 6 1.8324 -5.7622 -1.7740 22 6 3.2555 -6.0976 -1.2989 23 6 3.5621 -5.4496 0.0479 24 6 3.3253 -3.9309 0.0077 25 6 1.8861 -3.7095 -0.4070 26 1 1.2225 -4.2533 0.2654 27 1 -0.4850 -0.8350 0.0915 28 1 -0.6691 -2.4726 -0.7589 29 1 0.1569 -1.5336 -2.0336 30 1 -1.2186 -5.0789 -3.9427 31 1 -2.9923 -6.6927 -3.3834 32 1 -3.5107 -7.1850 -1.0271 33 1 -2.2489 -6.0706 0.7698 34 1 -0.4693 -4.4633 0.2105 35 1 1.1028 -6.1492 -1.0625 36 1 1.6567 -6.1963 -2.7582 37 1 3.3539 -7.1791 -1.2046 38 1 3.9717 -5.7379 -2.0376 39 1 2.9196 -5.8904 0.8101 40 1 4.6035 -5.6411 0.3066 41 1 3.5004 -3.5020 0.9943 42 1 3.9931 -3.4705 -0.7205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275046822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:15 Heat of formation + Delta-G solvation = 20.272164 kcal Electronic energy + Delta-G solvation = -21799.816021 eV Core-core repulsion = 18936.677371 eV Total energy + Delta-G solvation = -2863.138650 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.66529 -39.33854 -36.71843 -34.89722 -32.99705 -31.75739 -31.05058 -29.49815 -29.05658 -26.33894 -23.72122 -23.42600 -23.19822 -22.15713 -21.14162 -20.39545 -19.16170 -17.59647 -16.66086 -16.33721 -16.00637 -15.71866 -15.56483 -15.39387 -15.17751 -14.75036 -14.51285 -14.21177 -14.00214 -13.71034 -13.42103 -13.21633 -12.82798 -12.69773 -12.54353 -12.21282 -12.13426 -11.97578 -11.91890 -11.78008 -11.59037 -11.45704 -11.30121 -11.21258 -10.82389 -10.45125 -9.75550 -9.48535 -9.01455 -8.31663 -5.26388 0.50963 0.54561 1.54323 1.63090 1.81303 2.63801 2.91303 3.18794 3.35168 3.75509 3.81415 3.84942 3.98021 4.03993 4.19123 4.24577 4.29777 4.33223 4.39155 4.47419 4.53845 4.60492 4.65942 4.68701 4.74060 4.82455 4.92798 5.02281 5.07061 5.13391 5.16320 5.21346 5.24277 5.29770 5.32329 5.40549 5.45793 5.59108 5.62744 5.66261 5.74942 5.84566 6.17749 6.29592 6.89402 7.71945 8.40573 9.04068 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017474 B = 0.007149 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.960728 B = 3915.816552 C = 4961.409783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.086 4.086 3 Si 1.113 2.887 4 H -0.293 1.293 5 H -0.274 1.274 6 H -0.282 1.282 7 C -0.327 4.327 8 H 0.066 0.934 9 N -0.617 5.617 10 C 0.160 3.840 11 C -0.058 4.058 12 H 0.084 0.916 13 C -0.064 4.064 14 C -0.126 4.126 15 C -0.117 4.117 16 C -0.127 4.127 17 C -0.128 4.128 18 C -0.130 4.130 19 C -0.083 4.083 20 H 0.064 0.936 21 C -0.095 4.095 22 C -0.112 4.112 23 C -0.107 4.107 24 C -0.108 4.108 25 C 0.152 3.848 26 H 0.021 0.979 27 H 0.253 0.747 28 H 0.005 0.995 29 H 0.012 0.988 30 H 0.134 0.866 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.040 0.960 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.466 -16.717 -5.319 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.281 4.281 3 Si 0.938 3.062 4 H -0.220 1.220 5 H -0.200 1.200 6 H -0.208 1.208 7 C -0.455 4.455 8 H 0.084 0.916 9 N -0.342 5.342 10 C 0.035 3.965 11 C -0.078 4.078 12 H 0.102 0.898 13 C -0.064 4.064 14 C -0.144 4.144 15 C -0.135 4.135 16 C -0.145 4.145 17 C -0.146 4.146 18 C -0.149 4.149 19 C -0.103 4.103 20 H 0.082 0.918 21 C -0.133 4.133 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.146 4.146 25 C 0.046 3.954 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.022 0.978 29 H 0.031 0.969 30 H 0.152 0.848 31 H 0.168 0.832 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.059 0.941 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.391 -14.960 -5.316 15.881 hybrid contribution -0.029 -0.829 0.541 0.990 sum 0.361 -15.789 -4.775 16.499 Atomic orbital electron populations 1.70880 1.07644 1.29317 1.51935 1.27051 0.96593 1.04310 1.00131 0.82877 0.73830 0.72267 0.77241 1.21960 1.20007 1.20840 1.19982 0.98824 0.88752 1.37926 0.91621 1.44894 1.30094 1.02423 1.56789 1.21650 0.88926 0.94593 0.91366 1.20920 0.94289 0.93247 0.99310 0.89784 1.19664 0.96274 0.96803 0.93703 1.21248 0.96582 0.97538 0.98993 1.21432 0.97239 0.97573 0.97231 1.21420 1.00109 1.00313 0.92680 1.21329 0.95911 0.96912 1.00475 1.21134 0.98732 0.98866 0.96125 1.21896 0.94773 0.96609 0.97054 0.91755 1.21369 0.97468 0.92929 1.01551 1.21525 0.96058 1.00909 0.96396 1.21478 1.01934 0.92786 0.98262 1.21355 0.95918 0.97360 0.99986 1.21111 0.94665 0.84632 0.95030 0.96157 0.93703 0.97766 0.96934 0.84798 0.83195 0.83473 0.85260 0.88695 0.92223 0.90795 0.89889 0.91869 0.92484 0.90394 0.94127 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.33 12.86 21.65 0.28 -61.05 16 2 C -0.09 -5.14 5.17 84.86 0.44 -4.70 16 3 Si 1.11 53.19 30.00 68.60 2.06 55.25 16 4 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.33 -19.03 9.75 84.03 0.82 -18.21 16 8 H 0.07 3.77 7.55 -2.91 -0.02 3.75 16 9 N -0.62 -32.51 3.24 -668.44 -2.16 -34.67 16 10 C 0.16 8.02 4.53 86.64 0.39 8.41 16 11 C -0.06 -2.21 3.26 -10.86 -0.04 -2.24 16 12 H 0.08 2.96 7.97 -2.39 -0.02 2.94 16 13 C -0.06 -2.13 3.60 -19.87 -0.07 -2.20 16 14 C -0.13 -3.36 9.68 22.27 0.22 -3.14 16 15 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 16 C -0.13 -2.90 10.05 22.27 0.22 -2.67 16 17 C -0.13 -3.58 10.05 22.27 0.22 -3.36 16 18 C -0.13 -4.50 6.90 22.27 0.15 -4.35 16 19 C -0.08 -2.96 2.36 -10.54 -0.02 -2.98 16 20 H 0.06 2.38 8.08 -2.39 -0.02 2.36 16 21 C -0.10 -2.63 4.76 30.44 0.14 -2.49 16 22 C -0.11 -2.67 5.85 30.70 0.18 -2.49 16 23 C -0.11 -2.91 5.85 30.71 0.18 -2.73 16 24 C -0.11 -4.01 5.06 30.33 0.15 -3.86 16 25 C 0.15 6.39 2.36 45.18 0.11 6.50 16 26 H 0.02 0.92 5.38 -2.39 -0.01 0.91 16 27 H 0.25 16.58 5.99 -92.71 -0.55 16.03 16 28 H 0.00 0.25 5.80 -2.38 -0.01 0.23 16 29 H 0.01 0.69 7.74 -2.39 -0.02 0.67 16 30 H 0.13 3.05 8.00 -2.91 -0.02 3.03 16 31 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 32 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 34 H 0.10 3.86 5.23 -2.91 -0.02 3.85 16 35 H 0.06 1.75 6.22 -2.38 -0.01 1.73 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 42 H 0.05 2.03 8.09 -2.39 -0.02 2.01 16 Total: -1.00 -70.09 315.70 4.70 -65.39 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 1.20 Total: 17.98 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 3.32 Total: -42.89 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -1.88 Total: -95.73 kcal Atomic # 14 Polarization: 53.19 SS G_CDS: 2.06 Total: 55.25 kcal Total: -70.09 4.70 -65.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275046822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.664 kcal (2) G-P(sol) polarization free energy of solvation -70.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds