Wall clock time and date at job start Mon Mar 30 2020 01:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47240 * 89.99971 * 3 2 1 5 5 H 1.48507 * 109.46992 * 210.00076 * 3 2 1 6 6 H 1.48504 * 109.46875 * 329.99711 * 3 2 1 7 7 C 1.38808 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99985 * 20.91193 * 7 2 1 9 9 N 1.36932 * 120.00186 * 200.90915 * 7 2 1 10 10 C 1.47647 * 127.19365 * 16.88630 * 9 7 2 11 11 C 1.54209 * 106.22107 * 149.30702 * 10 9 7 12 12 H 1.09005 * 110.42041 * 258.17494 * 11 10 9 13 13 C 1.50704 * 110.18819 * 136.17360 * 11 10 9 14 14 C 1.38236 * 119.99699 * 303.79993 * 13 11 10 15 15 C 1.38228 * 119.99889 * 179.76798 * 14 13 11 16 16 C 1.38238 * 119.99789 * 0.48394 * 15 14 13 17 17 C 1.38234 * 120.00257 * 359.79261 * 16 15 14 18 18 C 1.38231 * 119.99688 * 359.95262 * 17 16 15 19 19 C 1.55016 * 105.39769 * 17.23081 * 11 10 9 20 20 H 1.09000 * 110.88423 * 121.81958 * 19 11 10 21 21 C 1.52937 * 107.13208 * 243.35923 * 19 11 10 22 22 C 1.52842 * 109.77264 * 166.64640 * 21 19 11 23 23 C 1.52750 * 108.43438 * 294.46134 * 22 21 19 24 24 C 1.51581 * 110.55624 * 61.07183 * 23 22 21 25 25 C 1.46370 * 127.19356 * 197.19867 * 9 7 2 26 26 H 1.09000 * 105.11795 * 100.88492 * 25 9 7 27 27 H 0.96997 * 120.00205 * 174.95526 * 1 2 3 28 28 H 1.09003 * 110.07682 * 268.60339 * 10 9 7 29 29 H 1.08999 * 110.08015 * 30.15362 * 10 9 7 30 30 H 1.08005 * 120.00078 * 359.97438 * 14 13 11 31 31 H 1.07997 * 120.00404 * 180.25428 * 15 14 13 32 32 H 1.07998 * 119.99896 * 179.76806 * 16 15 14 33 33 H 1.07998 * 120.00181 * 179.97438 * 17 16 15 34 34 H 1.08006 * 120.00068 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.42042 * 286.73327 * 21 19 11 36 36 H 1.08996 * 109.41909 * 46.55500 * 21 19 11 37 37 H 1.09000 * 109.64354 * 54.14493 * 22 21 19 38 38 H 1.09002 * 109.64248 * 174.78422 * 22 21 19 39 39 H 1.08998 * 109.25682 * 181.34515 * 23 22 21 40 40 H 1.09001 * 109.26203 * 300.79092 * 23 22 21 41 41 H 1.09000 * 108.25019 * 192.97877 * 24 23 22 42 42 H 1.09002 * 108.24961 * 76.17129 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5478 1.4401 -0.7001 6 1 1.4476 2.6527 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.5236 -2.1068 -0.3329 9 7 3.3119 -1.2410 0.4238 10 6 4.0227 -0.2201 1.2191 11 6 5.0671 -0.9805 2.0613 12 1 4.7186 -1.0934 3.0880 13 6 6.3860 -0.2517 2.0359 14 6 6.9957 0.0320 0.8281 15 6 8.2030 0.7047 0.8046 16 6 8.8057 1.0847 1.9893 17 6 8.1988 0.7959 3.1972 18 6 6.9888 0.1279 3.2205 19 6 5.2080 -2.3690 1.3867 20 1 6.2387 -2.5501 1.0818 21 6 4.7393 -3.4126 2.4016 22 6 4.5363 -4.7574 1.7042 23 6 3.3839 -4.6175 0.7114 24 6 3.7094 -3.5734 -0.3382 25 6 4.2913 -2.3003 0.1769 26 1 4.9141 -1.9277 -0.6364 27 1 -0.4850 -0.8368 -0.0739 28 1 4.5177 0.4914 0.5582 29 1 3.3221 0.3001 1.8723 30 1 6.5270 -0.2688 -0.0972 31 1 8.6774 0.9301 -0.1391 32 1 9.7508 1.6069 1.9710 33 1 8.6698 1.0925 4.1227 34 1 6.5148 -0.0982 4.1643 35 1 5.4905 -3.5200 3.1841 36 1 3.7981 -3.0890 2.8459 37 1 5.4463 -5.0355 1.1726 38 1 4.2923 -5.5204 2.4435 39 1 3.2117 -5.5766 0.2230 40 1 2.4821 -4.3202 1.2467 41 1 2.7934 -3.3358 -0.8789 42 1 4.4146 -4.0092 -1.0460 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275046826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:19 Heat of formation + Delta-G solvation = 34.424097 kcal Electronic energy + Delta-G solvation = -21662.583628 eV Core-core repulsion = 18800.058652 eV Total energy + Delta-G solvation = -2862.524976 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.04124 -38.35786 -34.96755 -33.40088 -31.51851 -30.72004 -30.24892 -28.79002 -27.19393 -24.24843 -22.52910 -22.50431 -21.90693 -20.98307 -19.85375 -18.08524 -17.06537 -16.76600 -15.50198 -15.12860 -14.94070 -14.42209 -14.16283 -13.82805 -13.61488 -13.47112 -13.19651 -12.74589 -12.67597 -12.43694 -12.04399 -11.78872 -11.51479 -11.29543 -11.11911 -10.98299 -10.74190 -10.68152 -10.53738 -10.08190 -9.92856 -9.81142 -9.66168 -9.33762 -9.09408 -8.74678 -8.53617 -8.36702 -7.00917 -6.26852 -3.18398 1.54279 1.57117 3.45806 3.55624 3.69857 3.95605 4.62516 4.80399 4.96763 5.09731 5.13281 5.14757 5.19796 5.27629 5.30724 5.48073 5.56196 5.65690 5.68979 5.75753 5.79650 5.87175 5.93522 6.00746 6.02525 6.12687 6.19200 6.25369 6.28225 6.32944 6.49982 6.57544 6.59137 6.60741 6.65871 6.73982 6.76233 6.78686 6.94250 7.02557 7.07333 7.19251 7.78740 8.38257 9.06877 9.63228 10.35203 11.20592 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.008721 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.945229 B = 3210.045889 C = 4633.178771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.019 4.019 3 Si 1.060 2.940 4 H -0.295 1.295 5 H -0.284 1.284 6 H -0.300 1.300 7 C -0.317 4.317 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.114 3.886 11 C -0.066 4.066 12 H 0.080 0.920 13 C -0.059 4.059 14 C -0.112 4.112 15 C -0.120 4.120 16 C -0.134 4.134 17 C -0.122 4.122 18 C -0.121 4.121 19 C -0.080 4.080 20 H 0.073 0.927 21 C -0.106 4.106 22 C -0.115 4.115 23 C -0.110 4.110 24 C -0.111 4.111 25 C 0.172 3.828 26 H 0.001 0.999 27 H 0.261 0.739 28 H 0.036 0.964 29 H 0.059 0.941 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.779 -3.856 4.771 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.219 4.219 3 Si 0.893 3.107 4 H -0.223 1.223 5 H -0.211 1.211 6 H -0.228 1.228 7 C -0.444 4.444 8 H 0.097 0.903 9 N -0.319 5.319 10 C -0.012 4.012 11 C -0.086 4.086 12 H 0.099 0.901 13 C -0.059 4.059 14 C -0.130 4.130 15 C -0.138 4.138 16 C -0.152 4.152 17 C -0.140 4.140 18 C -0.139 4.139 19 C -0.100 4.100 20 H 0.092 0.908 21 C -0.144 4.144 22 C -0.152 4.152 23 C -0.148 4.148 24 C -0.149 4.149 25 C 0.065 3.935 26 H 0.019 0.981 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.439 -2.215 4.748 16.304 hybrid contribution 0.248 -1.524 -0.077 1.546 sum 15.686 -3.739 4.671 16.789 Atomic orbital electron populations 1.70907 1.05770 1.29778 1.50219 1.25847 0.96429 1.00777 0.98885 0.83869 0.74472 0.76138 0.76254 1.22300 1.21054 1.22785 1.20000 0.85258 0.95903 1.43245 0.90340 1.44784 1.09162 1.17999 1.59936 1.22047 0.93180 0.92700 0.93285 1.21446 0.91737 0.94894 1.00542 0.90118 1.19997 0.95854 0.97066 0.93008 1.21129 0.95185 0.98574 0.98144 1.21115 0.95814 0.98872 0.97994 1.21047 1.00054 1.01341 0.92745 1.21059 0.95839 0.99425 0.97703 1.21072 0.95721 0.99362 0.97706 1.21851 0.98833 0.93256 0.96081 0.90849 1.21533 1.01098 0.94599 0.97127 1.21418 0.98646 0.96985 0.98192 1.21106 0.98580 0.97874 0.97227 1.20505 1.01902 0.94579 0.97944 1.19384 0.90324 0.90099 0.93719 0.98098 0.92823 0.94632 0.92268 0.85857 0.86415 0.86637 0.86523 0.86297 0.92976 0.91501 0.92512 0.92695 0.93072 0.91952 0.90591 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.91 13.70 55.49 0.76 -28.15 16 2 C -0.02 -0.56 5.45 -17.43 -0.10 -0.66 16 3 Si 1.06 27.12 24.82 -169.99 -4.22 22.90 16 4 H -0.30 -7.25 6.63 56.52 0.37 -6.87 16 5 H -0.28 -6.92 6.13 56.52 0.35 -6.57 16 6 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 7 C -0.32 -8.81 9.81 -15.06 -0.15 -8.96 16 8 H 0.08 2.28 6.59 -52.49 -0.35 1.94 16 9 N -0.59 -14.23 3.22 -166.89 -0.54 -14.77 16 10 C 0.11 2.49 4.18 -2.78 -0.01 2.48 16 11 C -0.07 -1.17 2.84 -90.07 -0.26 -1.42 16 12 H 0.08 1.36 7.23 -51.93 -0.38 0.99 16 13 C -0.06 -0.93 4.70 -104.62 -0.49 -1.42 16 14 C -0.11 -1.74 8.17 -39.59 -0.32 -2.06 16 15 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 16 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 17 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 18 C -0.12 -1.67 9.68 -39.59 -0.38 -2.05 16 19 C -0.08 -1.35 2.72 -90.13 -0.25 -1.60 16 20 H 0.07 1.16 7.47 -51.93 -0.39 0.77 16 21 C -0.11 -1.63 4.89 -26.84 -0.13 -1.76 16 22 C -0.11 -1.62 5.94 -26.94 -0.16 -1.78 16 23 C -0.11 -1.79 5.94 -27.58 -0.16 -1.95 16 24 C -0.11 -2.05 5.29 -29.34 -0.16 -2.21 16 25 C 0.17 3.43 2.75 -70.43 -0.19 3.24 16 26 H 0.00 0.03 7.96 -51.93 -0.41 -0.38 16 27 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 28 H 0.04 0.81 4.74 -51.93 -0.25 0.56 16 29 H 0.06 1.40 5.95 -51.93 -0.31 1.09 16 30 H 0.12 2.01 7.71 -52.48 -0.40 1.61 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.12 1.46 7.97 -52.48 -0.42 1.04 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.16 7.88 -51.93 -0.41 0.75 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.61 6.01 -51.93 -0.31 1.30 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -30.43 315.37 -9.85 -40.29 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.66 Total: 1.04 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -3.95 Total: -26.06 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.22 Total: -42.92 kcal Atomic # 14 Polarization: 27.12 SS G_CDS: -4.22 Total: 22.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.43 -9.85 -40.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275046826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.710 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds