Wall clock time and date at job start Mon Mar 30 2020 01:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47240 * 89.99971 * 3 2 1 5 5 H 1.48507 * 109.46992 * 210.00076 * 3 2 1 6 6 H 1.48504 * 109.46875 * 329.99711 * 3 2 1 7 7 C 1.38808 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99985 * 20.91193 * 7 2 1 9 9 N 1.36932 * 120.00186 * 200.90915 * 7 2 1 10 10 C 1.47647 * 127.19365 * 16.88630 * 9 7 2 11 11 C 1.54209 * 106.22107 * 149.30702 * 10 9 7 12 12 H 1.09005 * 110.42041 * 258.17494 * 11 10 9 13 13 C 1.50704 * 110.18819 * 136.17360 * 11 10 9 14 14 C 1.38236 * 119.99699 * 303.79993 * 13 11 10 15 15 C 1.38228 * 119.99889 * 179.76798 * 14 13 11 16 16 C 1.38238 * 119.99789 * 0.48394 * 15 14 13 17 17 C 1.38234 * 120.00257 * 359.79261 * 16 15 14 18 18 C 1.38231 * 119.99688 * 359.95262 * 17 16 15 19 19 C 1.55016 * 105.39769 * 17.23081 * 11 10 9 20 20 H 1.09000 * 110.88423 * 121.81958 * 19 11 10 21 21 C 1.52937 * 107.13208 * 243.35923 * 19 11 10 22 22 C 1.52842 * 109.77264 * 166.64640 * 21 19 11 23 23 C 1.52750 * 108.43438 * 294.46134 * 22 21 19 24 24 C 1.51581 * 110.55624 * 61.07183 * 23 22 21 25 25 C 1.46370 * 127.19356 * 197.19867 * 9 7 2 26 26 H 1.09000 * 105.11795 * 100.88492 * 25 9 7 27 27 H 0.96997 * 120.00205 * 174.95526 * 1 2 3 28 28 H 1.09003 * 110.07682 * 268.60339 * 10 9 7 29 29 H 1.08999 * 110.08015 * 30.15362 * 10 9 7 30 30 H 1.08005 * 120.00078 * 359.97438 * 14 13 11 31 31 H 1.07997 * 120.00404 * 180.25428 * 15 14 13 32 32 H 1.07998 * 119.99896 * 179.76806 * 16 15 14 33 33 H 1.07998 * 120.00181 * 179.97438 * 17 16 15 34 34 H 1.08006 * 120.00068 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.42042 * 286.73327 * 21 19 11 36 36 H 1.08996 * 109.41909 * 46.55500 * 21 19 11 37 37 H 1.09000 * 109.64354 * 54.14493 * 22 21 19 38 38 H 1.09002 * 109.64248 * 174.78422 * 22 21 19 39 39 H 1.08998 * 109.25682 * 181.34515 * 23 22 21 40 40 H 1.09001 * 109.26203 * 300.79092 * 23 22 21 41 41 H 1.09000 * 108.25019 * 192.97877 * 24 23 22 42 42 H 1.09002 * 108.24961 * 76.17129 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5478 1.4401 -0.7001 6 1 1.4476 2.6527 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.5236 -2.1068 -0.3329 9 7 3.3119 -1.2410 0.4238 10 6 4.0227 -0.2201 1.2191 11 6 5.0671 -0.9805 2.0613 12 1 4.7186 -1.0934 3.0880 13 6 6.3860 -0.2517 2.0359 14 6 6.9957 0.0320 0.8281 15 6 8.2030 0.7047 0.8046 16 6 8.8057 1.0847 1.9893 17 6 8.1988 0.7959 3.1972 18 6 6.9888 0.1279 3.2205 19 6 5.2080 -2.3690 1.3867 20 1 6.2387 -2.5501 1.0818 21 6 4.7393 -3.4126 2.4016 22 6 4.5363 -4.7574 1.7042 23 6 3.3839 -4.6175 0.7114 24 6 3.7094 -3.5734 -0.3382 25 6 4.2913 -2.3003 0.1769 26 1 4.9141 -1.9277 -0.6364 27 1 -0.4850 -0.8368 -0.0739 28 1 4.5177 0.4914 0.5582 29 1 3.3221 0.3001 1.8723 30 1 6.5270 -0.2688 -0.0972 31 1 8.6774 0.9301 -0.1391 32 1 9.7508 1.6069 1.9710 33 1 8.6698 1.0925 4.1227 34 1 6.5148 -0.0982 4.1643 35 1 5.4905 -3.5200 3.1841 36 1 3.7981 -3.0890 2.8459 37 1 5.4463 -5.0355 1.1726 38 1 4.2923 -5.5204 2.4435 39 1 3.2117 -5.5766 0.2230 40 1 2.4821 -4.3202 1.2467 41 1 2.7934 -3.3358 -0.8789 42 1 4.4146 -4.0092 -1.0460 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275046826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:18 Heat of formation + Delta-G solvation = 17.906768 kcal Electronic energy + Delta-G solvation = -21663.299873 eV Core-core repulsion = 18800.058652 eV Total energy + Delta-G solvation = -2863.241221 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.42938 -39.53407 -36.49888 -35.09758 -33.40022 -31.73802 -31.45993 -30.39601 -28.71940 -26.02853 -23.97153 -23.67276 -23.10854 -22.60338 -21.16573 -19.78141 -19.00227 -17.88662 -16.92697 -16.59588 -16.25972 -15.98846 -15.55288 -15.36414 -15.14248 -14.89414 -14.36967 -14.19319 -14.10755 -13.81042 -13.45207 -13.23750 -12.98003 -12.78778 -12.75018 -12.41478 -12.28034 -11.89271 -11.82891 -11.66945 -11.55544 -11.41499 -11.28325 -10.95035 -10.89995 -10.61508 -9.75943 -9.48823 -9.09133 -8.57554 -5.42431 0.50077 0.55945 1.35890 1.46866 1.63501 2.49258 2.90599 3.06006 3.31361 3.67382 3.79681 3.84459 3.96411 4.05833 4.17950 4.22315 4.24523 4.35512 4.43934 4.46343 4.52361 4.57619 4.64794 4.70857 4.77187 4.80943 4.85844 4.90708 5.04579 5.10046 5.13108 5.17160 5.23912 5.31430 5.37112 5.42496 5.51798 5.58214 5.64933 5.67663 5.72543 5.83745 6.15878 6.19102 6.84882 7.50892 8.22279 8.90093 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.008721 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.945229 B = 3210.045889 C = 4633.178771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.077 4.077 3 Si 1.098 2.902 4 H -0.281 1.281 5 H -0.270 1.270 6 H -0.306 1.306 7 C -0.293 4.293 8 H 0.053 0.947 9 N -0.614 5.614 10 C 0.110 3.890 11 C -0.055 4.055 12 H 0.086 0.914 13 C -0.079 4.079 14 C -0.132 4.132 15 C -0.125 4.125 16 C -0.128 4.128 17 C -0.119 4.119 18 C -0.126 4.126 19 C -0.070 4.070 20 H 0.093 0.907 21 C -0.104 4.104 22 C -0.108 4.108 23 C -0.107 4.107 24 C -0.112 4.112 25 C 0.166 3.834 26 H -0.008 1.008 27 H 0.248 0.752 28 H 0.032 0.968 29 H 0.036 0.964 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.030 0.970 41 H 0.036 0.964 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.947 -4.146 6.342 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.271 4.271 3 Si 0.926 3.074 4 H -0.208 1.208 5 H -0.195 1.195 6 H -0.234 1.234 7 C -0.422 4.422 8 H 0.071 0.929 9 N -0.339 5.339 10 C -0.015 4.015 11 C -0.074 4.074 12 H 0.105 0.895 13 C -0.080 4.080 14 C -0.150 4.150 15 C -0.142 4.142 16 C -0.146 4.146 17 C -0.137 4.137 18 C -0.144 4.144 19 C -0.090 4.090 20 H 0.111 0.889 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.150 4.150 25 C 0.060 3.940 26 H 0.010 0.990 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.122 0.878 31 H 0.154 0.846 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.150 0.850 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.659 -2.533 6.330 20.807 hybrid contribution -0.952 -1.493 -0.601 1.870 sum 18.706 -4.026 5.729 19.974 Atomic orbital electron populations 1.71003 1.06872 1.28936 1.54011 1.26876 0.96491 1.03866 0.99825 0.83355 0.73899 0.73042 0.77071 1.20766 1.19536 1.23401 1.19899 0.86915 0.94669 1.40684 0.92928 1.44887 1.08611 1.19846 1.60581 1.22080 0.93604 0.92631 0.93164 1.21296 0.91664 0.94769 0.99712 0.89546 1.19855 0.95294 0.98674 0.94132 1.21101 0.96455 1.00085 0.97342 1.21370 0.95028 0.98213 0.99639 1.21460 1.00871 1.00173 0.92071 1.21446 0.95017 0.98074 0.99174 1.21280 0.96431 0.99230 0.97421 1.21777 0.98764 0.93615 0.94829 0.88883 1.21524 1.00579 0.94652 0.97367 1.21407 0.98252 0.96831 0.98018 1.21082 0.98423 0.97878 0.97072 1.20504 1.00573 0.94959 0.98931 1.19674 0.89586 0.89507 0.95205 0.99024 0.94293 0.95083 0.94548 0.87750 0.84594 0.83521 0.83472 0.84959 0.90037 0.94143 0.90420 0.90462 0.90869 0.95108 0.94508 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.22 13.70 21.65 0.30 -62.92 16 2 C -0.08 -4.71 5.45 84.86 0.46 -4.24 16 3 Si 1.10 56.61 24.82 68.60 1.70 58.31 16 4 H -0.28 -13.67 6.63 99.48 0.66 -13.01 16 5 H -0.27 -13.05 6.13 99.48 0.61 -12.44 16 6 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 7 C -0.29 -17.12 9.81 84.03 0.82 -16.29 16 8 H 0.05 3.29 6.59 -2.91 -0.02 3.27 16 9 N -0.61 -30.27 3.22 -681.93 -2.19 -32.47 16 10 C 0.11 4.88 4.18 86.57 0.36 5.24 16 11 C -0.05 -1.87 2.84 -10.44 -0.03 -1.90 16 12 H 0.09 2.81 7.23 -2.38 -0.02 2.79 16 13 C -0.08 -2.34 4.70 -19.86 -0.09 -2.44 16 14 C -0.13 -3.85 8.17 22.27 0.18 -3.67 16 15 C -0.12 -2.92 10.05 22.27 0.22 -2.69 16 16 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 17 C -0.12 -2.39 10.05 22.27 0.22 -2.17 16 18 C -0.13 -3.06 9.68 22.27 0.22 -2.85 16 19 C -0.07 -2.25 2.72 -10.47 -0.03 -2.28 16 20 H 0.09 2.67 7.47 -2.39 -0.02 2.65 16 21 C -0.10 -2.93 4.89 30.52 0.15 -2.78 16 22 C -0.11 -2.72 5.94 30.46 0.18 -2.53 16 23 C -0.11 -3.38 5.94 30.05 0.18 -3.20 16 24 C -0.11 -4.15 5.29 28.90 0.15 -3.99 16 25 C 0.17 6.66 2.75 43.44 0.12 6.78 16 26 H -0.01 -0.33 7.96 -2.39 -0.02 -0.35 16 27 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16 28 H 0.03 1.42 4.74 -2.39 -0.01 1.41 16 29 H 0.04 1.75 5.95 -2.39 -0.01 1.74 16 30 H 0.10 3.37 7.71 -2.91 -0.02 3.35 16 31 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 34 H 0.13 2.79 7.97 -2.91 -0.02 2.77 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.36 7.88 -2.39 -0.02 1.34 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 40 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.04 1.63 6.01 -2.39 -0.01 1.62 16 42 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -69.90 315.37 3.96 -65.94 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.80 Total: 12.44 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 3.35 Total: -41.31 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -1.90 Total: -95.38 kcal Atomic # 14 Polarization: 56.61 SS G_CDS: 1.70 Total: 58.31 kcal Total: -69.90 3.96 -65.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275046826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.848 kcal (2) G-P(sol) polarization free energy of solvation -69.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds