Wall clock time and date at job start Mon Mar 30 2020 01:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99882 * 2 1 4 4 H 1.48497 * 109.47367 * 269.99959 * 3 2 1 5 5 H 1.48505 * 109.47234 * 29.99973 * 3 2 1 6 6 H 1.48507 * 109.47302 * 149.99665 * 3 2 1 7 7 C 1.38813 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00033 * 158.11586 * 7 2 1 9 9 N 1.36935 * 119.99966 * 338.11212 * 7 2 1 10 10 C 1.46500 * 120.00230 * 324.73338 * 9 7 2 11 11 C 1.50703 * 109.47351 * 270.00249 * 10 9 7 12 12 C 1.38236 * 120.00114 * 89.99936 * 11 10 9 13 13 C 1.38233 * 120.00148 * 179.72725 * 12 11 10 14 14 C 1.38231 * 119.99812 * 0.27552 * 13 12 11 15 15 C 1.50707 * 119.99960 * 179.97438 * 14 13 12 16 16 C 1.53778 * 113.61426 * 217.49552 * 15 14 13 17 17 C 1.53782 * 87.08222 * 220.02130 * 16 15 14 18 18 C 1.53780 * 87.07956 * 25.43556 * 17 16 15 19 19 C 1.38235 * 120.00397 * 359.97438 * 14 13 12 20 20 C 1.38229 * 120.00046 * 270.21456 * 11 10 9 21 21 C 1.46499 * 120.00228 * 144.73721 * 9 7 2 22 22 C 1.52999 * 117.49615 * 3.23889 * 21 9 7 23 23 C 1.53000 * 117.49683 * 294.57897 * 21 9 7 24 24 H 0.96999 * 120.00031 * 356.06531 * 1 2 3 25 25 H 1.09002 * 109.47491 * 149.99970 * 10 9 7 26 26 H 1.09003 * 109.47245 * 30.00109 * 10 9 7 27 27 H 1.08007 * 120.00108 * 0.02562 * 12 11 10 28 28 H 1.07996 * 120.00099 * 180.25343 * 13 12 11 29 29 H 1.08996 * 112.85011 * 348.80688 * 15 14 13 30 30 H 1.08998 * 113.61944 * 334.56898 * 16 15 14 31 31 H 1.09004 * 113.60875 * 105.47156 * 16 15 14 32 32 H 1.09000 * 113.61445 * 270.89276 * 17 16 15 33 33 H 1.08993 * 113.61552 * 139.98137 * 17 16 15 34 34 H 1.09001 * 113.61668 * 220.01672 * 18 17 16 35 35 H 1.09000 * 113.69274 * 89.12896 * 18 17 16 36 36 H 1.07997 * 120.00609 * 179.97438 * 19 14 13 37 37 H 1.08000 * 120.00296 * 0.05714 * 20 11 10 38 38 H 1.08996 * 115.55467 * 148.90637 * 21 9 7 39 39 H 1.09008 * 117.49826 * 359.97438 * 22 21 9 40 40 H 1.08998 * 117.50246 * 145.02529 * 22 21 9 41 41 H 1.08997 * 117.49844 * 214.97538 * 23 21 9 42 42 H 1.09006 * 117.49937 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0318 -1.2360 -0.3480 9 7 1.3996 -2.3451 0.4431 10 6 0.4446 -2.2830 1.5524 11 6 1.1765 -2.4700 2.8565 12 6 1.6781 -1.3726 3.5311 13 6 2.3445 -1.5436 4.7300 14 6 2.5143 -2.8124 5.2515 15 6 3.2414 -2.9989 6.5584 16 6 4.1278 -4.2549 6.5963 17 6 3.6454 -4.4559 8.0426 18 6 2.3864 -3.6653 7.6492 19 6 2.0173 -3.9103 4.5744 20 6 1.3502 -3.7392 3.3757 21 6 1.7012 -3.6301 -0.1925 22 6 2.7626 -3.6412 -1.2944 23 6 1.2843 -3.8106 -1.6535 24 1 -0.4850 0.8381 0.0576 25 1 -0.2987 -3.0718 1.4366 26 1 -0.0520 -1.3127 1.5504 27 1 1.5451 -0.3811 3.1238 28 1 2.7328 -0.6859 5.2591 29 1 3.7489 -2.0943 6.8932 30 1 3.8020 -5.0402 5.9143 31 1 5.1935 -4.0397 6.5174 32 1 4.2646 -3.9502 8.7837 33 1 3.4458 -5.4970 8.2957 34 1 2.0461 -2.9741 8.4203 35 1 1.5835 -4.2882 7.2550 36 1 2.1504 -4.9017 4.9815 37 1 0.9622 -4.5970 2.8465 38 1 1.6429 -4.5020 0.4589 39 1 3.2362 -2.6923 -1.5466 40 1 3.4023 -4.5206 -1.3682 41 1 0.9521 -4.8014 -1.9633 42 1 0.7852 -2.9734 -2.1416 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278552802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:34 Heat of formation + Delta-G solvation = 74.281469 kcal Electronic energy + Delta-G solvation = -20635.137726 eV Core-core repulsion = 17774.341095 eV Total energy + Delta-G solvation = -2860.796631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.83952 -39.15602 -38.17737 -35.39570 -33.31954 -31.67000 -31.33725 -28.02173 -26.41486 -26.11780 -24.43688 -23.54867 -23.00563 -21.82413 -21.47820 -19.92480 -18.40246 -17.47232 -17.15551 -16.48543 -16.44432 -15.86534 -15.74999 -15.33311 -14.88472 -14.61113 -14.14940 -13.98933 -13.69170 -13.49092 -13.26399 -13.15572 -12.92437 -12.67466 -12.51353 -12.41354 -12.20108 -12.00858 -11.81571 -11.63742 -11.41789 -11.31022 -11.20892 -10.98700 -10.91013 -10.48559 -9.65855 -9.20140 -8.54824 -7.82356 -5.45060 0.61118 0.66502 1.39428 1.43252 1.52061 2.46746 2.93205 3.14960 3.41351 3.66754 3.79059 3.81378 3.93180 4.11173 4.20201 4.25791 4.29034 4.35212 4.37766 4.49955 4.54673 4.64944 4.77598 4.86503 4.90665 4.92491 4.93548 5.00389 5.04774 5.14647 5.15666 5.27297 5.32843 5.34832 5.38310 5.52811 5.59989 5.60310 5.69070 5.76633 5.88468 6.06377 6.30117 6.45781 7.12563 7.82957 8.33389 9.09409 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.005338 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.703897 B = 5243.741250 C = 6072.138163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.031 4.031 3 Si 0.942 3.058 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.252 4.252 8 H 0.055 0.945 9 N -0.558 5.558 10 C 0.179 3.821 11 C -0.093 4.093 12 C -0.118 4.118 13 C -0.129 4.129 14 C -0.086 4.086 15 C -0.076 4.076 16 C -0.135 4.135 17 C -0.131 4.131 18 C -0.130 4.130 19 C -0.116 4.116 20 C -0.122 4.122 21 C 0.102 3.898 22 C -0.183 4.183 23 C -0.214 4.214 24 H 0.251 0.749 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.140 0.860 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.524 -9.577 13.609 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.228 4.228 3 Si 0.770 3.230 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.382 4.382 8 H 0.072 0.928 9 N -0.275 5.275 10 C 0.054 3.946 11 C -0.095 4.095 12 C -0.137 4.137 13 C -0.147 4.147 14 C -0.086 4.086 15 C -0.095 4.095 16 C -0.173 4.173 17 C -0.169 4.169 18 C -0.167 4.167 19 C -0.134 4.134 20 C -0.140 4.140 21 C -0.006 4.006 22 C -0.221 4.221 23 C -0.255 4.255 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.143 0.857 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.158 0.842 37 H 0.142 0.858 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.392 -9.418 13.552 17.362 hybrid contribution 0.088 1.525 -0.692 1.677 sum 5.481 -7.893 12.860 16.054 Atomic orbital electron populations 1.70144 1.06555 1.26235 1.52606 1.25618 0.95463 1.00915 1.00790 0.85681 0.78669 0.80891 0.77715 1.21127 1.21361 1.19993 1.19111 0.93957 0.86808 1.38331 0.92785 1.43471 1.49312 1.02061 1.32627 1.19861 0.90088 1.01867 0.82830 1.20900 0.98643 0.93615 0.96389 1.20974 0.99134 0.98099 0.95527 1.21150 1.00036 0.97773 0.95717 1.19867 0.99213 0.92474 0.97054 1.21591 0.97306 0.99047 0.91511 1.23054 0.99410 0.96914 0.97898 1.22798 0.96838 1.01023 0.96192 1.22979 0.97150 0.99237 0.97366 1.21084 0.98452 0.99022 0.94819 1.21133 1.00202 0.96082 0.96610 1.21487 1.01741 0.89640 0.87742 1.23033 0.91896 1.02170 1.05043 1.23274 0.97615 1.00987 1.03587 0.93927 0.94515 0.90743 0.89231 0.85700 0.88559 0.89836 0.91263 0.89255 0.90413 0.91055 0.90239 0.84218 0.85822 0.87296 0.90900 0.87177 0.87856 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.94 11.33 21.65 0.25 -52.70 16 2 C -0.03 -1.69 4.97 84.86 0.42 -1.27 16 3 Si 0.94 44.91 29.61 68.60 2.03 46.95 16 4 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.25 -13.77 8.62 84.03 0.72 -13.04 16 8 H 0.05 3.01 6.56 -2.91 -0.02 2.99 16 9 N -0.56 -27.82 2.76 -682.34 -1.88 -29.70 16 10 C 0.18 8.56 5.46 85.63 0.47 9.02 16 11 C -0.09 -3.89 5.46 -19.87 -0.11 -3.99 16 12 C -0.12 -4.93 9.70 22.27 0.22 -4.72 16 13 C -0.13 -4.41 9.71 22.27 0.22 -4.20 16 14 C -0.09 -2.51 5.29 -19.86 -0.11 -2.61 16 15 C -0.08 -1.67 3.98 -11.01 -0.04 -1.72 16 16 C -0.14 -2.50 7.45 31.12 0.23 -2.26 16 17 C -0.13 -1.94 8.08 31.12 0.25 -1.69 16 18 C -0.13 -2.36 7.55 31.12 0.23 -2.12 16 19 C -0.12 -3.39 8.61 22.27 0.19 -3.20 16 20 C -0.12 -4.20 9.70 22.27 0.22 -3.99 16 21 C 0.10 4.31 6.56 44.99 0.30 4.61 16 22 C -0.18 -7.10 9.80 30.62 0.30 -6.80 16 23 C -0.21 -8.58 10.36 30.62 0.32 -8.26 16 24 H 0.25 14.16 8.32 -92.71 -0.77 13.39 16 25 H 0.04 1.67 8.02 -2.39 -0.02 1.65 16 26 H 0.07 4.09 5.31 -2.39 -0.01 4.08 16 27 H 0.09 4.14 8.06 -2.91 -0.02 4.12 16 28 H 0.13 3.75 8.05 -2.91 -0.02 3.72 16 29 H 0.10 2.01 8.09 -2.39 -0.02 1.99 16 30 H 0.08 1.56 6.31 -2.39 -0.02 1.55 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.50 7.72 -2.39 -0.02 1.49 16 36 H 0.14 3.21 6.66 -2.91 -0.02 3.19 16 37 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 38 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 39 H 0.07 3.18 6.37 -2.38 -0.02 3.17 16 40 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 41 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 42 H 0.05 2.64 8.14 -2.38 -0.02 2.62 16 Total: -1.00 -61.52 338.99 5.21 -56.32 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.99 Total: 25.37 kcal Atomic # 6 Polarization: -50.06 SS G_CDS: 3.83 Total: -46.24 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.64 Total: -82.40 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.95 kcal Total: -61.52 5.21 -56.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278552802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.599 kcal (2) G-P(sol) polarization free energy of solvation -61.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds