Wall clock time and date at job start Mon Mar 30 2020 01:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00225 * 2 1 4 4 H 1.48489 * 109.47178 * 270.00345 * 3 2 1 5 5 H 1.48500 * 109.46927 * 30.00298 * 3 2 1 6 6 H 1.48500 * 109.46975 * 150.00204 * 3 2 1 7 7 C 1.37880 * 119.99439 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99347 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00293 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47077 * 185.18385 * 9 7 2 11 11 C 1.50179 * 111.00188 * 176.06047 * 10 9 7 12 12 C 1.55815 * 106.40304 * 214.87458 * 11 10 9 13 13 H 1.08992 * 110.82487 * 235.41061 * 12 11 10 14 14 C 1.50701 * 110.67306 * 112.32333 * 12 11 10 15 15 C 1.38230 * 119.99920 * 144.65780 * 14 12 11 16 16 C 1.38236 * 120.00176 * 179.79061 * 15 14 12 17 17 C 1.38240 * 119.99945 * 0.43352 * 16 15 14 18 18 C 1.38237 * 119.99864 * 359.81886 * 17 16 15 19 19 C 1.38234 * 119.99858 * 359.97316 * 18 17 16 20 20 C 1.51493 * 103.17353 * 353.90656 * 12 11 10 21 21 H 1.09001 * 111.05675 * 274.64113 * 20 12 11 22 22 C 1.51851 * 122.21998 * 140.39070 * 20 12 11 23 23 C 1.56200 * 101.97415 * 206.41190 * 22 20 12 24 24 C 1.55857 * 105.91899 * 25.16560 * 23 22 20 25 25 C 1.44000 * 111.16563 * 61.55186 * 10 9 7 26 26 H 1.09000 * 107.63327 * 53.15150 * 25 10 9 27 27 H 0.97004 * 119.99786 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46843 * 65.17828 * 9 7 2 29 29 H 1.09004 * 109.46701 * 305.18108 * 9 7 2 30 30 H 1.09005 * 110.07284 * 95.64182 * 11 10 9 31 31 H 1.09004 * 110.07103 * 334.11206 * 11 10 9 32 32 H 1.08006 * 119.99909 * 359.97438 * 15 14 12 33 33 H 1.08004 * 120.00035 * 180.27698 * 16 15 14 34 34 H 1.07990 * 119.99777 * 179.83763 * 17 16 15 35 35 H 1.07996 * 119.99694 * 179.97438 * 18 17 16 36 36 H 1.07999 * 119.99934 * 179.97438 * 19 18 17 37 37 H 1.08997 * 110.92879 * 88.24612 * 22 20 12 38 38 H 1.08996 * 110.92883 * 324.58102 * 22 20 12 39 39 H 1.08999 * 110.17054 * 144.30382 * 23 22 20 40 40 H 1.08998 * 110.17074 * 266.03074 * 23 22 20 41 41 H 1.09005 * 110.47576 * 125.17841 * 24 23 22 42 42 H 1.08999 * 110.47817 * 247.79047 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2005 -3.6129 0.1240 11 6 1.4794 -4.9265 0.2236 12 6 2.3216 -5.8190 1.1839 13 1 2.5876 -6.7608 0.7040 14 6 1.5747 -6.0707 2.4683 15 6 1.6937 -7.2894 3.1096 16 6 1.0119 -7.5188 4.2901 17 6 0.2041 -6.5326 4.8246 18 6 0.0810 -5.3156 4.1805 19 6 0.7661 -5.0848 3.0023 20 6 3.5574 -4.9809 1.4392 21 1 4.3025 -5.1338 0.6585 22 6 4.2103 -4.8971 2.8077 23 6 4.9054 -3.4994 2.7501 24 6 4.1007 -2.6644 1.7087 25 6 2.9302 -3.5380 1.3631 26 1 2.2023 -3.4593 2.1707 27 1 -0.4850 0.8401 0.0004 28 1 0.6952 -2.5979 -0.9331 29 1 0.5568 -2.5179 0.8397 30 1 1.4141 -5.3929 -0.7594 31 1 0.4808 -4.7749 0.6333 32 1 2.3217 -8.0614 2.6899 33 1 1.1085 -8.4695 4.7935 34 1 -0.3305 -6.7127 5.7454 35 1 -0.5505 -4.5453 4.5979 36 1 0.6696 -4.1342 2.4989 37 1 4.9446 -5.6920 2.9381 38 1 3.4613 -4.9271 3.5989 39 1 4.8661 -3.0195 3.7280 40 1 5.9405 -3.6075 2.4263 41 1 3.7610 -1.7280 2.1513 42 1 4.7076 -2.4710 0.8242 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285477150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:05 Heat of formation + Delta-G solvation = 37.464126 kcal Electronic energy + Delta-G solvation = -21577.440431 eV Core-core repulsion = 18715.047281 eV Total energy + Delta-G solvation = -2862.393151 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.67079 -38.24868 -34.79994 -33.40362 -32.00753 -30.72016 -29.22801 -27.42683 -26.40214 -25.80804 -22.94460 -22.34929 -21.51566 -20.58333 -19.24297 -18.74087 -16.81320 -16.19926 -15.51498 -15.13092 -14.89715 -14.66898 -14.15519 -13.87095 -13.67480 -13.12089 -12.92635 -12.79085 -12.26116 -12.19734 -12.11063 -11.80021 -11.39824 -11.17472 -11.07196 -10.85765 -10.76892 -10.63185 -10.52333 -10.29160 -10.08544 -9.94465 -9.81292 -9.37838 -9.04921 -8.73687 -8.44330 -8.42489 -7.26715 -6.02398 -4.02877 1.52827 1.56621 3.31755 3.37967 3.41060 3.94566 4.40042 4.50939 4.81866 5.01905 5.10358 5.13581 5.22733 5.30520 5.33693 5.37249 5.48579 5.60437 5.68114 5.74616 5.77863 5.94707 5.99839 6.06136 6.13414 6.17707 6.25187 6.29991 6.32561 6.42326 6.44361 6.60014 6.65116 6.69901 6.76274 6.88536 6.92016 6.98316 7.15697 7.22300 7.38587 7.77199 8.04454 8.29132 8.50638 9.06068 9.61353 11.09012 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.005953 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.705158 B = 4702.412608 C = 5133.610583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.067 0.933 9 C 0.182 3.818 10 N -0.501 5.501 11 C 0.038 3.962 12 C -0.050 4.050 13 H 0.080 0.920 14 C -0.059 4.059 15 C -0.120 4.120 16 C -0.124 4.124 17 C -0.132 4.132 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.109 4.109 21 H 0.084 0.916 22 C -0.107 4.107 23 C -0.122 4.122 24 C -0.094 4.094 25 C 0.083 3.917 26 H 0.033 0.967 27 H 0.260 0.740 28 H 0.027 0.973 29 H -0.005 1.005 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.130 0.870 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.409 -13.285 8.009 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.086 0.914 9 C 0.056 3.944 10 N -0.225 5.225 11 C -0.090 4.090 12 C -0.069 4.069 13 H 0.098 0.902 14 C -0.059 4.059 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.150 4.150 18 C -0.135 4.135 19 C -0.132 4.132 20 C -0.128 4.128 21 H 0.102 0.898 22 C -0.145 4.145 23 C -0.160 4.160 24 C -0.132 4.132 25 C -0.027 4.027 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.013 0.987 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.148 0.852 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.582 -13.106 7.532 15.795 hybrid contribution -0.334 1.029 0.673 1.274 sum 4.248 -12.076 8.205 15.206 Atomic orbital electron populations 1.69963 1.06043 1.26666 1.51181 1.24972 0.94808 0.99209 0.95522 0.86560 0.79794 0.83326 0.78161 1.20642 1.21374 1.19782 1.21208 0.93734 0.89762 1.49786 0.91444 1.19904 0.90367 0.87905 0.96190 1.64249 1.23522 1.01670 1.33027 1.23787 0.96022 0.91034 0.98167 1.20566 0.94977 0.98822 0.92539 0.90178 1.19818 0.96257 0.93509 0.96290 1.20974 1.00215 0.96754 0.95887 1.21043 0.97851 0.98969 0.96319 1.21071 0.99812 0.94029 1.00051 1.21174 0.99519 0.97143 0.95681 1.21398 0.96261 0.99534 0.96025 1.22324 0.95882 0.97132 0.97449 0.89769 1.21905 0.99157 0.96684 0.96746 1.22908 0.98877 0.95059 0.99151 1.21381 0.95791 0.97872 0.98119 1.21874 0.95480 0.93151 0.92217 0.94935 0.93002 0.95467 0.98743 0.90931 0.93333 0.86446 0.86579 0.86618 0.86279 0.85200 0.92442 0.91579 0.92319 0.92140 0.91137 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.51 -14.01 8.24 -34.44 -0.28 -14.29 16 8 H 0.07 1.84 6.15 -52.49 -0.32 1.51 16 9 C 0.18 4.72 4.60 -4.98 -0.02 4.70 16 10 N -0.50 -10.82 5.33 -224.37 -1.20 -12.02 16 11 C 0.04 0.68 5.93 -0.48 0.00 0.68 16 12 C -0.05 -0.76 3.28 -91.03 -0.30 -1.06 16 13 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 14 C -0.06 -0.86 3.51 -104.62 -0.37 -1.23 16 15 C -0.12 -1.53 9.69 -39.58 -0.38 -1.91 16 16 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 17 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16 18 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 19 C -0.11 -1.84 7.42 -39.58 -0.29 -2.13 16 20 C -0.11 -1.73 3.05 -89.50 -0.27 -2.00 16 21 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 22 C -0.11 -1.53 6.15 -25.60 -0.16 -1.69 16 23 C -0.12 -1.79 6.94 -23.49 -0.16 -1.96 16 24 C -0.09 -1.74 5.00 -26.65 -0.13 -1.87 16 25 C 0.08 1.61 1.69 -68.24 -0.12 1.49 16 26 H 0.03 0.68 4.66 -51.93 -0.24 0.44 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H -0.01 -0.14 7.63 -51.93 -0.40 -0.54 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.92 5.95 -51.93 -0.31 0.61 16 32 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 33 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.13 2.43 4.87 -52.49 -0.26 2.18 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.00 6.83 -51.93 -0.35 0.64 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.42 8.00 -51.93 -0.42 1.01 16 42 H 0.07 1.28 7.92 -51.93 -0.41 0.87 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -29.35 320.03 -10.93 -40.28 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.49 Total: 1.96 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -3.78 Total: -25.73 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.46 Total: -37.92 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.35 -10.93 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285477150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.742 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds