Wall clock time and date at job start Mon Mar 30 2020 01:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00225 * 2 1 4 4 H 1.48489 * 109.47178 * 270.00345 * 3 2 1 5 5 H 1.48500 * 109.46927 * 30.00298 * 3 2 1 6 6 H 1.48500 * 109.46975 * 150.00204 * 3 2 1 7 7 C 1.37880 * 119.99439 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99347 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00293 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47077 * 185.18385 * 9 7 2 11 11 C 1.50179 * 111.00188 * 176.06047 * 10 9 7 12 12 C 1.55815 * 106.40304 * 214.87458 * 11 10 9 13 13 H 1.08992 * 110.82487 * 235.41061 * 12 11 10 14 14 C 1.50701 * 110.67306 * 112.32333 * 12 11 10 15 15 C 1.38230 * 119.99920 * 144.65780 * 14 12 11 16 16 C 1.38236 * 120.00176 * 179.79061 * 15 14 12 17 17 C 1.38240 * 119.99945 * 0.43352 * 16 15 14 18 18 C 1.38237 * 119.99864 * 359.81886 * 17 16 15 19 19 C 1.38234 * 119.99858 * 359.97316 * 18 17 16 20 20 C 1.51493 * 103.17353 * 353.90656 * 12 11 10 21 21 H 1.09001 * 111.05675 * 274.64113 * 20 12 11 22 22 C 1.51851 * 122.21998 * 140.39070 * 20 12 11 23 23 C 1.56200 * 101.97415 * 206.41190 * 22 20 12 24 24 C 1.55857 * 105.91899 * 25.16560 * 23 22 20 25 25 C 1.44000 * 111.16563 * 61.55186 * 10 9 7 26 26 H 1.09000 * 107.63327 * 53.15150 * 25 10 9 27 27 H 0.97004 * 119.99786 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46843 * 65.17828 * 9 7 2 29 29 H 1.09004 * 109.46701 * 305.18108 * 9 7 2 30 30 H 1.09005 * 110.07284 * 95.64182 * 11 10 9 31 31 H 1.09004 * 110.07103 * 334.11206 * 11 10 9 32 32 H 1.08006 * 119.99909 * 359.97438 * 15 14 12 33 33 H 1.08004 * 120.00035 * 180.27698 * 16 15 14 34 34 H 1.07990 * 119.99777 * 179.83763 * 17 16 15 35 35 H 1.07996 * 119.99694 * 179.97438 * 18 17 16 36 36 H 1.07999 * 119.99934 * 179.97438 * 19 18 17 37 37 H 1.08997 * 110.92879 * 88.24612 * 22 20 12 38 38 H 1.08996 * 110.92883 * 324.58102 * 22 20 12 39 39 H 1.08999 * 110.17054 * 144.30382 * 23 22 20 40 40 H 1.08998 * 110.17074 * 266.03074 * 23 22 20 41 41 H 1.09005 * 110.47576 * 125.17841 * 24 23 22 42 42 H 1.08999 * 110.47817 * 247.79047 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2005 -3.6129 0.1240 11 6 1.4794 -4.9265 0.2236 12 6 2.3216 -5.8190 1.1839 13 1 2.5876 -6.7608 0.7040 14 6 1.5747 -6.0707 2.4683 15 6 1.6937 -7.2894 3.1096 16 6 1.0119 -7.5188 4.2901 17 6 0.2041 -6.5326 4.8246 18 6 0.0810 -5.3156 4.1805 19 6 0.7661 -5.0848 3.0023 20 6 3.5574 -4.9809 1.4392 21 1 4.3025 -5.1338 0.6585 22 6 4.2103 -4.8971 2.8077 23 6 4.9054 -3.4994 2.7501 24 6 4.1007 -2.6644 1.7087 25 6 2.9302 -3.5380 1.3631 26 1 2.2023 -3.4593 2.1707 27 1 -0.4850 0.8401 0.0004 28 1 0.6952 -2.5979 -0.9331 29 1 0.5568 -2.5179 0.8397 30 1 1.4141 -5.3929 -0.7594 31 1 0.4808 -4.7749 0.6333 32 1 2.3217 -8.0614 2.6899 33 1 1.1085 -8.4695 4.7935 34 1 -0.3305 -6.7127 5.7454 35 1 -0.5505 -4.5453 4.5979 36 1 0.6696 -4.1342 2.4989 37 1 4.9446 -5.6920 2.9381 38 1 3.4613 -4.9271 3.5989 39 1 4.8661 -3.0195 3.7280 40 1 5.9405 -3.6075 2.4263 41 1 3.7610 -1.7280 2.1513 42 1 4.7076 -2.4710 0.8242 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285477150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:04 Heat of formation + Delta-G solvation = 20.927477 kcal Electronic energy + Delta-G solvation = -21578.157514 eV Core-core repulsion = 18715.047281 eV Total energy + Delta-G solvation = -2863.110233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.01374 -39.39961 -36.37610 -35.10293 -33.74139 -31.76506 -30.56480 -29.06915 -27.87574 -27.44185 -24.49150 -23.57462 -23.03298 -21.85344 -20.63143 -20.13153 -18.65057 -17.54618 -16.93525 -16.67779 -16.27378 -16.15480 -15.56415 -15.39868 -14.93715 -14.45097 -14.20666 -14.15916 -14.03116 -13.77356 -13.41506 -13.10323 -12.99825 -12.90591 -12.62452 -12.44462 -12.28846 -12.16420 -11.84508 -11.71434 -11.60620 -11.33476 -11.22328 -11.15327 -10.83080 -10.60674 -9.78026 -9.51732 -9.06323 -8.23195 -6.31869 0.48862 0.52382 1.36430 1.38109 1.48906 2.36921 2.88848 3.05517 3.11220 3.45345 3.78141 3.90359 4.03401 4.06832 4.16960 4.24676 4.28267 4.38655 4.45200 4.57621 4.64468 4.65517 4.66451 4.80405 4.88233 4.90147 4.96635 5.02019 5.12015 5.14829 5.17816 5.18236 5.24372 5.26637 5.41220 5.51163 5.57897 5.61580 5.65083 5.67182 5.80160 5.97366 6.16341 6.43405 6.48059 6.86528 7.37684 8.89123 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.005953 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.705158 B = 4702.412608 C = 5133.610583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.517 4.517 8 H 0.069 0.931 9 C 0.200 3.800 10 N -0.509 5.509 11 C 0.034 3.966 12 C -0.040 4.040 13 H 0.112 0.888 14 C -0.069 4.069 15 C -0.115 4.115 16 C -0.116 4.116 17 C -0.128 4.128 18 C -0.134 4.134 19 C -0.139 4.139 20 C -0.090 4.090 21 H 0.090 0.910 22 C -0.097 4.097 23 C -0.112 4.112 24 C -0.098 4.098 25 C 0.065 3.935 26 H 0.013 0.987 27 H 0.263 0.737 28 H -0.005 1.005 29 H -0.040 1.040 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.040 0.960 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 -15.826 9.437 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.073 3.927 10 N -0.232 5.232 11 C -0.094 4.094 12 C -0.058 4.058 13 H 0.130 0.870 14 C -0.069 4.069 15 C -0.133 4.133 16 C -0.134 4.134 17 C -0.145 4.145 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.109 4.109 21 H 0.108 0.892 22 C -0.135 4.135 23 C -0.150 4.150 24 C -0.137 4.137 25 C -0.045 4.045 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.013 0.987 29 H -0.022 1.022 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.161 0.839 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.969 -15.664 8.961 19.345 hybrid contribution -1.155 1.779 0.241 2.135 sum 5.814 -13.885 9.202 17.643 Atomic orbital electron populations 1.70105 1.07790 1.27720 1.52152 1.25907 0.95676 1.03142 0.94959 0.85456 0.78694 0.78452 0.78555 1.19730 1.20840 1.18640 1.21494 0.93892 0.90684 1.49452 0.91261 1.19504 0.90354 0.89764 0.93043 1.64178 1.22677 1.01690 1.34673 1.23865 0.95640 0.90156 0.99697 1.20537 0.93874 0.99100 0.92320 0.86962 1.19767 0.96517 0.94255 0.96328 1.21280 1.00115 0.96002 0.95880 1.21486 0.96213 0.99977 0.95722 1.21397 0.99595 0.92934 1.00615 1.21283 0.99844 0.98577 0.95541 1.21162 0.98689 0.98584 0.97248 1.22305 0.95919 0.93839 0.98872 0.89183 1.21867 0.99383 0.97179 0.95039 1.22858 0.99392 0.94629 0.98088 1.21410 0.95912 0.97440 0.98892 1.22018 0.95393 0.96736 0.90323 0.96939 0.92837 0.98680 1.02210 0.89959 0.95325 0.83472 0.82922 0.83892 0.86519 0.89643 0.89049 0.92526 0.91579 0.89645 0.94146 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.32 13.29 21.45 0.28 -58.03 16 2 C 0.00 0.04 5.46 84.66 0.46 0.51 16 3 Si 0.96 45.52 29.54 68.60 2.03 47.55 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.52 -30.17 8.24 25.60 0.21 -29.96 16 8 H 0.07 3.93 6.15 -2.91 -0.02 3.92 16 9 C 0.20 11.27 4.60 85.56 0.39 11.66 16 10 N -0.51 -23.25 5.33 -863.78 -4.61 -27.85 16 11 C 0.03 1.28 5.93 86.63 0.51 1.80 16 12 C -0.04 -1.16 3.28 -11.06 -0.04 -1.20 16 13 H 0.11 2.59 8.07 -2.39 -0.02 2.57 16 14 C -0.07 -1.94 3.51 -19.87 -0.07 -2.01 16 15 C -0.12 -2.49 9.69 22.27 0.22 -2.27 16 16 C -0.12 -2.25 10.05 22.27 0.22 -2.02 16 17 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 18 C -0.13 -3.87 10.05 22.27 0.22 -3.65 16 19 C -0.14 -4.68 7.42 22.27 0.17 -4.52 16 20 C -0.09 -2.73 3.05 -10.07 -0.03 -2.76 16 21 H 0.09 2.64 8.14 -2.39 -0.02 2.63 16 22 C -0.10 -2.50 6.15 31.33 0.19 -2.31 16 23 C -0.11 -3.07 6.94 32.69 0.23 -2.85 16 24 C -0.10 -3.74 5.00 30.64 0.15 -3.58 16 25 C 0.06 2.63 1.69 46.11 0.08 2.70 16 26 H 0.01 0.57 4.66 -2.39 -0.01 0.56 16 27 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 28 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H -0.04 -2.46 7.63 -2.39 -0.02 -2.48 16 30 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 31 H 0.03 1.19 5.95 -2.38 -0.01 1.17 16 32 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 33 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.14 2.34 8.06 -2.92 -0.02 2.32 16 35 H 0.12 3.24 8.06 -2.91 -0.02 3.21 16 36 H 0.09 3.62 4.87 -2.91 -0.01 3.60 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.60 6.83 -2.39 -0.02 1.58 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.04 1.72 8.00 -2.38 -0.02 1.70 16 42 H 0.06 2.27 7.92 -2.39 -0.02 2.25 16 Total: -1.00 -68.63 320.03 1.84 -66.79 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.99 Total: 14.61 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 3.15 Total: -43.06 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -4.32 Total: -85.89 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.63 1.84 -66.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285477150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.713 kcal (2) G-P(sol) polarization free energy of solvation -68.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds