Wall clock time and date at job start Mon Mar 30 2020 01:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48499 * 109.47216 * 90.00331 * 3 2 1 5 5 H 1.48496 * 109.47378 * 330.00290 * 3 2 1 6 6 H 1.48505 * 109.47144 * 210.00121 * 3 2 1 7 7 C 1.37877 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99676 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00433 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47445 * 185.07041 * 9 7 2 11 11 C 1.48515 * 111.00121 * 170.44579 * 10 9 7 12 12 C 1.54909 * 103.21094 * 199.96214 * 11 10 9 13 13 H 1.09005 * 110.69653 * 279.07991 * 12 11 10 14 14 C 1.50697 * 110.70011 * 155.86314 * 12 11 10 15 15 C 1.38233 * 119.99789 * 193.80559 * 14 12 11 16 16 C 1.38247 * 120.00007 * 179.76672 * 15 14 12 17 17 C 1.38230 * 119.99429 * 0.50725 * 16 15 14 18 18 C 1.38236 * 120.00739 * 359.74387 * 17 16 15 19 19 C 1.38238 * 120.00198 * 14.07661 * 14 12 11 20 20 C 1.54542 * 103.04380 * 37.47210 * 12 11 10 21 21 H 1.09004 * 111.84391 * 216.67926 * 20 12 11 22 22 C 1.54202 * 108.68295 * 91.82323 * 20 12 11 23 23 C 1.54854 * 104.32346 * 223.87024 * 22 20 12 24 24 C 1.54862 * 102.73652 * 38.05680 * 23 22 20 25 25 C 1.47818 * 110.99737 * 53.00874 * 10 9 7 26 26 H 1.09004 * 111.21358 * 267.90314 * 25 10 9 27 27 H 0.97000 * 119.99830 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47264 * 305.07250 * 9 7 2 29 29 H 1.09003 * 109.47167 * 65.07335 * 9 7 2 30 30 H 1.09005 * 110.66979 * 318.39028 * 11 10 9 31 31 H 1.08993 * 110.66865 * 81.53140 * 11 10 9 32 32 H 1.08002 * 120.00268 * 359.97438 * 15 14 12 33 33 H 1.07994 * 119.99954 * 180.23359 * 16 15 14 34 34 H 1.08007 * 119.99917 * 179.72676 * 17 16 15 35 35 H 1.07994 * 120.00487 * 179.97438 * 18 17 16 36 36 H 1.07999 * 119.99822 * 0.02562 * 19 14 12 37 37 H 1.09008 * 110.45980 * 342.57999 * 22 20 12 38 38 H 1.08994 * 110.46524 * 105.15617 * 22 20 12 39 39 H 1.08997 * 110.75448 * 279.74223 * 23 22 20 40 40 H 1.09002 * 110.91666 * 156.44263 * 23 22 20 41 41 H 1.08993 * 110.46816 * 203.10696 * 24 23 22 42 42 H 1.09007 * 110.47310 * 80.50110 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4466 2.6527 -0.6999 6 1 3.5467 1.4402 -0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2009 -3.6130 0.1212 11 6 1.4899 -4.8959 0.3545 12 6 2.5889 -5.8050 0.9588 13 1 3.2213 -6.2190 0.1734 14 6 1.9750 -6.9052 1.7856 15 6 2.7655 -7.6511 2.6398 16 6 2.2015 -8.6572 3.4019 17 6 0.8489 -8.9243 3.3019 18 6 0.0593 -8.1819 2.4439 19 6 0.6223 -7.1723 1.6857 20 6 3.3928 -4.8337 1.8524 21 1 4.4595 -5.0571 1.8371 22 6 2.8019 -4.8687 3.2763 23 6 2.7376 -3.3810 3.7012 24 6 2.3227 -2.6691 2.3900 25 6 3.0897 -3.4261 1.2875 26 1 4.0062 -2.9075 1.0059 27 1 -0.4850 -0.8401 0.0004 28 1 0.5583 -2.5188 0.8408 29 1 0.6939 -2.5971 -0.9323 30 1 0.6718 -4.7592 1.0618 31 1 1.1227 -5.3086 -0.5850 32 1 3.8232 -7.4456 2.7143 33 1 2.8185 -9.2374 4.0720 34 1 0.4090 -9.7132 3.8940 35 1 -0.9974 -8.3908 2.3655 36 1 0.0056 -6.5927 1.0148 37 1 1.8029 -5.3049 3.2637 38 1 3.4546 -5.4285 3.9461 39 1 3.7142 -3.0328 4.0375 40 1 1.9870 -3.2299 4.4770 41 1 2.6236 -1.6217 2.4133 42 1 1.2473 -2.7545 2.2336 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285477163.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:13 Heat of formation + Delta-G solvation = 27.990785 kcal Electronic energy + Delta-G solvation = -21536.370337 eV Core-core repulsion = 18673.566391 eV Total energy + Delta-G solvation = -2862.803945 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56631 -38.48206 -34.39804 -33.59529 -32.21255 -30.89239 -29.20416 -27.03528 -26.62168 -25.32741 -23.04364 -22.24456 -21.79730 -20.71793 -19.22745 -18.55953 -16.91701 -16.36026 -16.09083 -15.12741 -14.73474 -14.58958 -14.18109 -13.87588 -13.72625 -13.64589 -13.27106 -12.88395 -12.46521 -12.27293 -11.61019 -11.42949 -11.34936 -11.16316 -10.98653 -10.90476 -10.70346 -10.44097 -10.37203 -10.24046 -10.13274 -10.10036 -10.06659 -9.80457 -8.86937 -8.55952 -8.52383 -8.37711 -7.30725 -6.35614 -4.02884 1.41418 1.43934 3.43441 3.47583 3.63099 3.82755 4.51167 4.62673 4.76807 4.95522 4.98865 5.08111 5.12954 5.25827 5.27307 5.39365 5.52121 5.54749 5.61222 5.67715 5.79861 5.88754 6.01871 6.06663 6.07228 6.13273 6.16085 6.21352 6.28216 6.34622 6.43359 6.50667 6.53517 6.55704 6.71020 6.75725 6.89094 7.03828 7.04686 7.12590 7.29966 7.71776 8.00015 8.32033 8.58666 8.88016 9.66206 11.03835 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.005038 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.126160 B = 5556.792693 C = 5857.754174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 1.070 2.930 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.583 4.583 8 H 0.056 0.944 9 C 0.170 3.830 10 N -0.509 5.509 11 C 0.039 3.961 12 C -0.054 4.054 13 H 0.089 0.911 14 C -0.052 4.052 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.134 4.134 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.094 4.094 21 H 0.078 0.922 22 C -0.114 4.114 23 C -0.132 4.132 24 C -0.131 4.131 25 C 0.091 3.909 26 H 0.082 0.918 27 H 0.267 0.733 28 H -0.006 1.006 29 H 0.017 0.983 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.228 -15.439 7.208 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.188 4.188 3 Si 0.898 3.102 4 H -0.216 1.216 5 H -0.211 1.211 6 H -0.214 1.214 7 C -0.621 4.621 8 H 0.074 0.926 9 C 0.044 3.956 10 N -0.232 5.232 11 C -0.089 4.089 12 C -0.072 4.072 13 H 0.107 0.893 14 C -0.053 4.053 15 C -0.133 4.133 16 C -0.139 4.139 17 C -0.152 4.152 18 C -0.137 4.137 19 C -0.141 4.141 20 C -0.113 4.113 21 H 0.096 0.904 22 C -0.152 4.152 23 C -0.170 4.170 24 C -0.169 4.169 25 C -0.018 4.018 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.012 0.988 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.324 -13.778 6.683 15.912 hybrid contribution -0.385 -1.625 0.732 1.824 sum 3.939 -15.403 7.415 17.543 Atomic orbital electron populations 1.70764 1.06896 1.30388 1.47094 1.25754 0.96461 1.02511 0.94071 0.83523 0.74762 0.75193 0.76676 1.21566 1.21080 1.21419 1.21935 0.94630 0.90891 1.54689 0.92622 1.20056 0.91339 0.89234 0.94968 1.64795 1.18947 1.02001 1.37502 1.23250 0.95076 0.91798 0.98788 1.21127 0.97101 0.92536 0.96478 0.89301 1.19803 0.93607 0.95675 0.96190 1.20991 0.99802 0.95815 0.96734 1.21077 0.95194 0.98038 0.99626 1.21064 0.94174 1.00260 0.99664 1.21126 0.99642 0.96089 0.96808 1.21218 0.94861 0.97965 1.00055 1.22667 0.98666 0.95408 0.94571 0.90409 1.22560 1.00635 0.96685 0.95280 1.22598 1.00521 0.95380 0.98460 1.22844 1.01184 1.00379 0.92521 1.22701 0.96945 0.92650 0.89472 0.90007 0.92308 0.98814 0.96495 0.94214 0.91162 0.86251 0.86481 0.86599 0.86390 0.85756 0.91380 0.92545 0.92215 0.92586 0.90465 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.53 13.65 55.43 0.76 -26.77 16 2 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 25.21 29.90 -169.99 -5.08 20.13 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.58 -16.04 6.91 -34.44 -0.24 -16.27 16 8 H 0.06 1.55 6.98 -52.49 -0.37 1.18 16 9 C 0.17 4.32 3.66 -4.98 -0.02 4.30 16 10 N -0.51 -10.98 5.36 -222.96 -1.20 -12.17 16 11 C 0.04 0.70 4.55 -1.92 -0.01 0.69 16 12 C -0.05 -0.81 3.26 -89.96 -0.29 -1.11 16 13 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.05 -0.71 3.41 -104.63 -0.36 -1.07 16 15 C -0.12 -1.39 7.76 -39.58 -0.31 -1.70 16 16 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 17 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 18 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 19 C -0.12 -1.64 8.87 -39.58 -0.35 -1.99 16 20 C -0.09 -1.46 3.42 -88.30 -0.30 -1.77 16 21 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 22 C -0.11 -1.69 4.67 -25.12 -0.12 -1.80 16 23 C -0.13 -2.13 6.90 -24.77 -0.17 -2.30 16 24 C -0.13 -2.63 4.67 -25.14 -0.12 -2.75 16 25 C 0.09 1.77 3.06 -65.72 -0.20 1.57 16 26 H 0.08 1.68 7.71 -51.93 -0.40 1.28 16 27 H 0.27 8.03 7.19 -40.82 -0.29 7.74 16 28 H -0.01 -0.15 5.35 -51.93 -0.28 -0.42 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.74 6.63 -51.93 -0.34 0.40 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.12 1.31 7.90 -52.49 -0.41 0.89 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.67 6.29 -52.49 -0.33 1.34 16 37 H 0.07 1.08 6.11 -51.92 -0.32 0.76 16 38 H 0.06 0.74 7.80 -51.93 -0.40 0.33 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.72 7.36 -51.93 -0.38 1.33 16 42 H 0.07 1.60 5.46 -51.93 -0.28 1.32 16 LS Contribution 314.77 15.07 4.74 4.74 Total: -1.00 -29.54 314.77 -10.97 -40.51 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.41 Total: 2.76 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -3.77 Total: -29.20 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.44 Total: -38.95 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.54 -10.97 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285477163.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.498 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds