Wall clock time and date at job start Mon Mar 30 2020 01:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48499 * 109.47216 * 90.00331 * 3 2 1 5 5 H 1.48496 * 109.47378 * 330.00290 * 3 2 1 6 6 H 1.48505 * 109.47144 * 210.00121 * 3 2 1 7 7 C 1.37877 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99676 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00433 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47445 * 185.07041 * 9 7 2 11 11 C 1.48515 * 111.00121 * 170.44579 * 10 9 7 12 12 C 1.54909 * 103.21094 * 199.96214 * 11 10 9 13 13 H 1.09005 * 110.69653 * 279.07991 * 12 11 10 14 14 C 1.50697 * 110.70011 * 155.86314 * 12 11 10 15 15 C 1.38233 * 119.99789 * 193.80559 * 14 12 11 16 16 C 1.38247 * 120.00007 * 179.76672 * 15 14 12 17 17 C 1.38230 * 119.99429 * 0.50725 * 16 15 14 18 18 C 1.38236 * 120.00739 * 359.74387 * 17 16 15 19 19 C 1.38238 * 120.00198 * 14.07661 * 14 12 11 20 20 C 1.54542 * 103.04380 * 37.47210 * 12 11 10 21 21 H 1.09004 * 111.84391 * 216.67926 * 20 12 11 22 22 C 1.54202 * 108.68295 * 91.82323 * 20 12 11 23 23 C 1.54854 * 104.32346 * 223.87024 * 22 20 12 24 24 C 1.54862 * 102.73652 * 38.05680 * 23 22 20 25 25 C 1.47818 * 110.99737 * 53.00874 * 10 9 7 26 26 H 1.09004 * 111.21358 * 267.90314 * 25 10 9 27 27 H 0.97000 * 119.99830 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47264 * 305.07250 * 9 7 2 29 29 H 1.09003 * 109.47167 * 65.07335 * 9 7 2 30 30 H 1.09005 * 110.66979 * 318.39028 * 11 10 9 31 31 H 1.08993 * 110.66865 * 81.53140 * 11 10 9 32 32 H 1.08002 * 120.00268 * 359.97438 * 15 14 12 33 33 H 1.07994 * 119.99954 * 180.23359 * 16 15 14 34 34 H 1.08007 * 119.99917 * 179.72676 * 17 16 15 35 35 H 1.07994 * 120.00487 * 179.97438 * 18 17 16 36 36 H 1.07999 * 119.99822 * 0.02562 * 19 14 12 37 37 H 1.09008 * 110.45980 * 342.57999 * 22 20 12 38 38 H 1.08994 * 110.46524 * 105.15617 * 22 20 12 39 39 H 1.08997 * 110.75448 * 279.74223 * 23 22 20 40 40 H 1.09002 * 110.91666 * 156.44263 * 23 22 20 41 41 H 1.08993 * 110.46816 * 203.10696 * 24 23 22 42 42 H 1.09007 * 110.47310 * 80.50110 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4466 2.6527 -0.6999 6 1 3.5467 1.4402 -0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2009 -3.6130 0.1212 11 6 1.4899 -4.8959 0.3545 12 6 2.5889 -5.8050 0.9588 13 1 3.2213 -6.2190 0.1734 14 6 1.9750 -6.9052 1.7856 15 6 2.7655 -7.6511 2.6398 16 6 2.2015 -8.6572 3.4019 17 6 0.8489 -8.9243 3.3019 18 6 0.0593 -8.1819 2.4439 19 6 0.6223 -7.1723 1.6857 20 6 3.3928 -4.8337 1.8524 21 1 4.4595 -5.0571 1.8371 22 6 2.8019 -4.8687 3.2763 23 6 2.7376 -3.3810 3.7012 24 6 2.3227 -2.6691 2.3900 25 6 3.0897 -3.4261 1.2875 26 1 4.0062 -2.9075 1.0059 27 1 -0.4850 -0.8401 0.0004 28 1 0.5583 -2.5188 0.8408 29 1 0.6939 -2.5971 -0.9323 30 1 0.6718 -4.7592 1.0618 31 1 1.1227 -5.3086 -0.5850 32 1 3.8232 -7.4456 2.7143 33 1 2.8185 -9.2374 4.0720 34 1 0.4090 -9.7132 3.8940 35 1 -0.9974 -8.3908 2.3655 36 1 0.0056 -6.5927 1.0148 37 1 1.8029 -5.3049 3.2637 38 1 3.4546 -5.4285 3.9461 39 1 3.7142 -3.0328 4.0375 40 1 1.9870 -3.2299 4.4770 41 1 2.6236 -1.6217 2.4133 42 1 1.2473 -2.7545 2.2336 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285477163.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:12 Heat of formation + Delta-G solvation = 11.460350 kcal Electronic energy + Delta-G solvation = -21537.087150 eV Core-core repulsion = 18673.566391 eV Total energy + Delta-G solvation = -2863.520759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.89228 -39.59339 -36.17686 -35.01650 -33.95223 -31.79976 -30.50275 -28.49866 -28.29312 -26.97572 -24.69894 -23.52123 -23.01670 -22.02530 -20.55407 -20.14595 -18.53909 -17.90039 -17.40272 -16.29585 -16.10900 -15.68422 -15.64207 -15.47589 -15.35746 -15.07783 -14.55197 -14.18744 -13.89338 -13.40286 -13.15151 -13.08532 -13.03190 -12.65650 -12.46672 -12.39666 -12.09933 -11.96779 -11.85486 -11.71481 -11.66762 -11.57015 -11.38717 -11.25126 -10.67442 -10.57579 -9.76099 -9.47567 -9.10369 -8.66941 -6.34189 0.50540 0.54988 1.50435 1.59425 1.77072 2.54385 2.91655 3.16114 3.19166 3.53158 3.55468 3.82510 4.01422 4.09464 4.19937 4.23984 4.25500 4.34033 4.42257 4.53473 4.59541 4.61679 4.65833 4.71334 4.77974 4.81905 4.86671 4.90068 5.03072 5.05717 5.12953 5.17389 5.18166 5.22312 5.42562 5.48343 5.51182 5.64436 5.67223 5.75938 5.76613 5.99418 6.17186 6.31481 6.42255 6.62898 7.44035 8.72716 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.005038 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.126160 B = 5556.792693 C = 5857.754174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.035 4.035 3 Si 1.117 2.883 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.582 4.582 8 H 0.051 0.949 9 C 0.185 3.815 10 N -0.523 5.523 11 C 0.041 3.959 12 C -0.040 4.040 13 H 0.095 0.905 14 C -0.066 4.066 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.132 4.132 18 C -0.127 4.127 19 C -0.144 4.144 20 C -0.083 4.083 21 H 0.106 0.894 22 C -0.102 4.102 23 C -0.123 4.123 24 C -0.128 4.128 25 C 0.084 3.916 26 H 0.069 0.931 27 H 0.252 0.748 28 H -0.025 1.025 29 H -0.014 1.014 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.439 -17.432 9.134 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.232 4.232 3 Si 0.938 3.062 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.621 4.621 8 H 0.070 0.930 9 C 0.059 3.941 10 N -0.246 5.246 11 C -0.087 4.087 12 C -0.059 4.059 13 H 0.114 0.886 14 C -0.066 4.066 15 C -0.135 4.135 16 C -0.137 4.137 17 C -0.150 4.150 18 C -0.145 4.145 19 C -0.162 4.162 20 C -0.102 4.102 21 H 0.124 0.876 22 C -0.140 4.140 23 C -0.161 4.161 24 C -0.167 4.167 25 C -0.025 4.025 26 H 0.088 0.912 27 H 0.061 0.939 28 H -0.008 1.008 29 H 0.004 0.996 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.154 0.846 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.149 0.851 36 H 0.127 0.873 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.544 -15.805 8.613 19.152 hybrid contribution -1.124 -1.084 0.118 1.566 sum 5.419 -16.889 8.732 19.770 Atomic orbital electron populations 1.70896 1.07953 1.29484 1.49428 1.27243 0.96461 1.06374 0.93127 0.82933 0.74218 0.71300 0.77709 1.19849 1.20979 1.19534 1.22138 0.94415 0.91871 1.53630 0.93046 1.19709 0.91392 0.90481 0.92567 1.64657 1.18577 1.02021 1.39306 1.23259 0.95809 0.90797 0.98840 1.20994 0.95700 0.92441 0.96736 0.88647 1.19644 0.93788 0.95976 0.97209 1.21171 1.00443 0.95711 0.96172 1.21442 0.95481 0.97496 0.99280 1.21432 0.94356 1.00229 0.98993 1.21348 1.00673 0.95738 0.96743 1.21239 0.95096 0.98972 1.00910 1.22652 1.00391 0.92331 0.94807 0.87588 1.22488 1.00765 0.95616 0.95086 1.22564 1.01517 0.95968 0.96075 1.22667 0.98929 0.99318 0.95751 1.22788 0.95649 0.95462 0.88558 0.91246 0.93918 1.00772 0.99562 0.95473 0.91220 0.84556 0.83577 0.84000 0.85082 0.87324 0.92484 0.89254 0.90207 0.92157 0.93507 0.94628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.92 13.65 21.45 0.29 -58.63 16 2 C -0.03 -2.03 5.46 84.65 0.46 -1.57 16 3 Si 1.12 51.27 29.90 68.60 2.05 53.32 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.58 -33.36 6.91 25.60 0.18 -33.19 16 8 H 0.05 2.94 6.98 -2.91 -0.02 2.92 16 9 C 0.19 10.06 3.66 85.56 0.31 10.37 16 10 N -0.52 -23.45 5.36 -859.31 -4.61 -28.06 16 11 C 0.04 1.53 4.55 86.64 0.39 1.92 16 12 C -0.04 -1.17 3.26 -10.36 -0.03 -1.20 16 13 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 14 C -0.07 -1.67 3.41 -19.87 -0.07 -1.73 16 15 C -0.12 -2.39 7.76 22.27 0.17 -2.22 16 16 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16 17 C -0.13 -2.41 10.05 22.27 0.22 -2.18 16 18 C -0.13 -2.77 10.05 22.27 0.22 -2.54 16 19 C -0.14 -3.78 8.87 22.27 0.20 -3.58 16 20 C -0.08 -2.41 3.42 -9.29 -0.03 -2.44 16 21 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 22 C -0.10 -2.74 4.67 31.63 0.15 -2.59 16 23 C -0.12 -3.80 6.90 31.86 0.22 -3.58 16 24 C -0.13 -5.31 4.67 31.63 0.15 -5.16 16 25 C 0.08 3.30 3.06 45.70 0.14 3.44 16 26 H 0.07 2.88 7.71 -2.39 -0.02 2.86 16 27 H 0.25 16.12 7.19 -92.71 -0.67 15.45 16 28 H -0.03 -1.44 5.35 -2.39 -0.01 -1.46 16 29 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 30 H 0.03 1.08 6.63 -2.38 -0.02 1.06 16 31 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.14 2.30 7.90 -2.91 -0.02 2.28 16 33 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 35 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.11 3.07 6.29 -2.91 -0.02 3.05 16 37 H 0.06 1.70 6.11 -2.38 -0.01 1.68 16 38 H 0.09 1.88 7.80 -2.39 -0.02 1.86 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.05 2.16 7.36 -2.39 -0.02 2.15 16 42 H 0.04 1.71 5.46 -2.38 -0.01 1.70 16 Total: -1.00 -67.18 314.77 1.74 -65.44 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 1.10 Total: 16.04 kcal Atomic # 6 Polarization: -51.02 SS G_CDS: 2.91 Total: -48.11 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -4.32 Total: -86.69 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.05 Total: 53.32 kcal Total: -67.18 1.74 -65.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285477163.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.903 kcal (2) G-P(sol) polarization free energy of solvation -67.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds