Wall clock time and date at job start Mon Mar 30 2020 01:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86796 * 120.00144 * 2 1 4 4 H 1.48496 * 109.46979 * 269.99889 * 3 2 1 5 5 H 1.48497 * 109.47035 * 29.99888 * 3 2 1 6 6 H 1.48496 * 109.47090 * 149.99853 * 3 2 1 7 7 C 1.39949 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00238 * 197.86633 * 7 2 1 9 9 C 1.41394 * 119.99735 * 17.86668 * 7 2 1 10 10 C 1.40715 * 120.24324 * 204.38820 * 9 7 2 11 11 C 1.37620 * 119.74766 * 179.97438 * 10 9 7 12 12 C 1.38639 * 120.24666 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.74631 * 179.97438 * 12 11 10 14 14 N 1.46905 * 109.46508 * 90.00398 * 13 12 11 15 15 C 1.49811 * 111.00033 * 289.59006 * 14 13 12 16 16 C 1.50545 * 104.61106 * 245.34416 * 15 14 13 17 17 H 1.08997 * 110.12766 * 80.34598 * 16 15 14 18 18 C 1.51078 * 125.15034 * 215.31571 * 16 15 14 19 19 C 1.56371 * 101.57964 * 155.67000 * 18 16 15 20 20 C 1.55899 * 105.78787 * 334.92015 * 19 18 16 21 21 C 1.50448 * 104.19049 * 352.36702 * 20 19 18 22 22 H 1.09000 * 110.30031 * 279.26901 * 21 20 19 23 23 C 1.50190 * 110.99695 * 169.99659 * 14 13 12 24 24 C 1.38631 * 120.49687 * 0.27749 * 12 11 10 25 25 C 1.37610 * 120.25345 * 359.44250 * 24 12 11 26 26 H 0.96995 * 119.99413 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.12793 * 359.95801 * 10 9 7 28 28 H 1.07997 * 119.87598 * 180.02562 * 11 10 9 29 29 H 1.08997 * 109.46710 * 209.99644 * 13 12 11 30 30 H 1.08993 * 109.47155 * 330.00756 * 13 12 11 31 31 H 1.08999 * 110.41051 * 4.12562 * 15 14 13 32 32 H 1.09002 * 110.40662 * 126.56267 * 15 14 13 33 33 H 1.08998 * 111.00811 * 273.74649 * 18 16 15 34 34 H 1.09001 * 110.99949 * 37.55570 * 18 16 15 35 35 H 1.08996 * 110.18702 * 94.00681 * 19 18 16 36 36 H 1.08997 * 110.18405 * 215.76860 * 19 18 16 37 37 H 1.08998 * 110.48908 * 233.68667 * 20 19 18 38 38 H 1.09002 * 110.48360 * 111.04238 * 20 19 18 39 39 H 1.09001 * 110.93573 * 265.88367 * 23 14 13 40 40 H 1.09000 * 110.93771 * 29.55368 * 23 14 13 41 41 H 1.08010 * 119.86845 * 179.69846 * 24 12 11 42 42 H 1.08005 * 120.13021 * 180.27748 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4000 5 1 1.4398 2.6526 0.7000 6 1 3.5398 1.4401 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2345 0.2875 9 6 1.3521 -2.4071 -0.3746 10 6 1.8256 -3.6499 0.0852 11 6 1.1790 -4.8067 -0.2859 12 6 0.0655 -4.7508 -1.1099 13 6 -0.6336 -6.0246 -1.5097 14 7 -1.6792 -6.3385 -0.5267 15 6 -1.0790 -6.7658 0.7777 16 6 -1.4906 -8.2057 0.9315 17 1 -0.8385 -8.8475 0.3391 18 6 -1.8323 -8.8776 2.2408 19 6 -2.7524 -10.0479 1.7623 20 6 -3.3615 -9.5809 0.4053 21 6 -2.9309 -8.1446 0.2826 22 1 -3.5837 -7.5023 0.8735 23 6 -2.5550 -7.4581 -1.0115 24 6 -0.4060 -3.5325 -1.5738 25 6 0.2213 -2.3626 -1.2110 26 1 -0.4849 0.8401 0.0004 27 1 2.6932 -3.6957 0.7266 28 1 1.5404 -5.7616 0.0662 29 1 -1.0859 -5.8975 -2.4932 30 1 0.0889 -6.8400 -1.5444 31 1 0.0072 -6.6827 0.7417 32 1 -1.4801 -6.1665 1.5951 33 1 -0.9361 -9.2599 2.7294 34 1 -2.3737 -8.1980 2.8990 35 1 -2.1642 -10.9542 1.6187 36 1 -3.5442 -10.2254 2.4900 37 1 -4.4488 -9.6524 0.4305 38 1 -2.9583 -10.1717 -0.4172 39 1 -3.4390 -7.0701 -1.5175 40 1 -1.9998 -8.1327 -1.6632 41 1 -1.2715 -3.5011 -2.2193 42 1 -0.1504 -1.4142 -1.5700 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335990222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:31 Heat of formation + Delta-G solvation = 10.299734 kcal Electronic energy + Delta-G solvation = -20408.303538 eV Core-core repulsion = 17544.732451 eV Total energy + Delta-G solvation = -2863.571087 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30605 -39.42408 -36.77661 -35.38352 -32.55672 -31.37398 -31.00887 -30.01468 -27.49424 -27.03100 -24.99903 -22.87297 -22.38954 -21.67929 -20.78694 -20.58156 -19.21485 -17.24985 -17.16640 -16.28443 -16.14629 -15.76754 -15.52205 -15.49129 -15.21802 -14.37396 -14.26113 -13.95328 -13.74729 -13.59161 -13.38519 -13.18700 -12.87357 -12.69982 -12.54537 -12.37058 -12.12320 -12.02338 -12.01203 -11.82306 -11.60777 -11.35586 -11.23086 -11.21007 -10.99699 -10.86668 -9.33750 -9.26711 -9.10832 -8.62176 -6.32198 0.96240 1.16118 1.37460 1.51076 1.51582 2.21087 2.67465 3.08532 3.14088 3.76204 3.78399 3.96321 4.14652 4.24808 4.26647 4.30780 4.41375 4.47077 4.54175 4.56482 4.65965 4.73110 4.76348 4.80603 4.85377 4.93124 5.03696 5.06373 5.12949 5.16856 5.17488 5.20309 5.30202 5.39428 5.47801 5.51337 5.52718 5.71969 5.88998 6.03593 6.11657 6.20891 6.31109 6.40446 6.72449 6.95685 7.05946 8.34717 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038683 B = 0.003613 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.662537 B = 7748.691940 C = 7896.535562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.080 3.920 10 C -0.244 4.244 11 C -0.083 4.083 12 C -0.193 4.193 13 C 0.120 3.880 14 N -0.539 5.539 15 C 0.056 3.944 16 C -0.129 4.129 17 H 0.072 0.928 18 C -0.106 4.106 19 C -0.116 4.116 20 C -0.100 4.100 21 C -0.111 4.111 22 H 0.068 0.932 23 C 0.053 3.947 24 C -0.088 4.088 25 C -0.190 4.190 26 H 0.287 0.713 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.101 0.899 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 -15.861 0.641 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.534 4.534 8 H 0.092 0.908 9 C 0.077 3.923 10 C -0.263 4.263 11 C -0.101 4.101 12 C -0.195 4.195 13 C -0.007 4.007 14 N -0.263 5.263 15 C -0.072 4.072 16 C -0.149 4.149 17 H 0.090 0.910 18 C -0.144 4.144 19 C -0.154 4.154 20 C -0.138 4.138 21 C -0.130 4.130 22 H 0.087 0.913 23 C -0.073 4.073 24 C -0.107 4.107 25 C -0.210 4.210 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.119 0.881 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.089 -15.244 0.703 16.431 hybrid contribution 0.912 0.565 -0.017 1.073 sum -5.177 -14.680 0.686 15.581 Atomic orbital electron populations 1.69902 1.09050 1.30444 1.35839 1.26775 0.95478 1.04547 0.91240 0.85192 0.79034 0.75869 0.79514 1.18656 1.19212 1.18218 1.19838 0.98320 0.92672 1.42541 0.90828 1.17946 0.91962 0.93042 0.89318 1.21137 1.04406 0.93266 1.07528 1.20639 0.95612 0.96488 0.97366 1.19293 0.99439 0.94141 1.06579 1.20777 0.91831 0.93216 0.94890 1.65294 1.19746 1.38211 1.03059 1.22126 0.98333 0.94429 0.92266 1.22524 0.97552 0.95369 0.99436 0.90964 1.21806 0.99813 0.97477 0.95290 1.22929 0.98622 0.97560 0.96243 1.21511 1.01045 0.93213 0.98054 1.22226 0.96583 0.97593 0.96567 0.91313 1.22489 0.96943 0.91654 0.96256 1.20720 0.97993 0.92549 0.99420 1.21261 1.00386 0.96966 1.02378 0.90228 0.88778 0.87207 0.90746 0.94526 0.92718 0.92676 0.91048 0.91761 0.90674 0.90646 0.90590 0.90998 0.90148 0.92576 0.88090 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.99 10.96 21.83 0.24 -44.75 16 2 C 0.03 1.79 5.14 85.26 0.44 2.22 16 3 Si 0.98 39.45 29.60 68.60 2.03 41.48 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.50 -28.31 9.05 23.46 0.21 -28.09 16 8 H 0.07 3.99 7.91 -2.91 -0.02 3.97 16 9 C 0.08 4.49 5.57 -21.29 -0.12 4.37 16 10 C -0.24 -12.45 9.80 22.73 0.22 -12.23 16 11 C -0.08 -3.70 8.61 22.22 0.19 -3.51 16 12 C -0.19 -8.42 5.15 -19.67 -0.10 -8.52 16 13 C 0.12 4.17 4.83 85.56 0.41 4.58 16 14 N -0.54 -17.67 5.28 -891.67 -4.71 -22.38 16 15 C 0.06 1.74 6.23 84.94 0.53 2.27 16 16 C -0.13 -3.04 2.77 -10.40 -0.03 -3.07 16 17 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 18 C -0.11 -2.03 6.71 31.14 0.21 -1.82 16 19 C -0.12 -1.73 6.94 32.77 0.23 -1.50 16 20 C -0.10 -1.61 6.68 30.77 0.21 -1.40 16 21 C -0.11 -2.43 2.87 -10.38 -0.03 -2.46 16 22 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 23 C 0.05 1.33 6.50 85.08 0.55 1.88 16 24 C -0.09 -4.27 9.67 22.22 0.21 -4.05 16 25 C -0.19 -10.49 8.70 22.73 0.20 -10.29 16 26 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 27 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 28 H 0.11 4.26 6.86 -2.91 -0.02 4.24 16 29 H 0.07 2.42 8.02 -2.39 -0.02 2.40 16 30 H 0.04 1.17 7.99 -2.39 -0.02 1.15 16 31 H 0.05 1.82 5.31 -2.39 -0.01 1.81 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 1.28 7.90 -2.39 -0.02 1.26 16 41 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 Total: -1.00 -60.92 328.33 1.88 -59.04 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.98 Total: 28.23 kcal Atomic # 6 Polarization: -64.97 SS G_CDS: 3.34 Total: -61.63 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -4.47 Total: -67.13 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -60.92 1.88 -59.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335990222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.344 kcal (2) G-P(sol) polarization free energy of solvation -60.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds