Wall clock time and date at job start Mon Mar 30 2020 01:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86802 * 119.99733 * 2 1 4 4 H 1.48499 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47065 * 300.00192 * 3 2 1 6 6 H 1.48499 * 109.47081 * 60.00253 * 3 2 1 7 7 C 1.39942 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99507 * 197.85446 * 7 2 1 9 9 C 1.41392 * 120.00489 * 17.85181 * 7 2 1 10 10 C 1.40715 * 120.24688 * 204.38034 * 9 7 2 11 11 C 1.37618 * 119.74075 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.25370 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.75213 * 180.02562 * 12 11 10 14 14 N 1.46903 * 109.47333 * 89.99180 * 13 12 11 15 15 C 1.46784 * 110.99743 * 66.04893 * 14 13 12 16 16 C 1.52994 * 109.83218 * 188.84207 * 15 14 13 17 17 C 1.53323 * 109.19832 * 297.78910 * 16 15 14 18 18 C 1.53244 * 108.51873 * 54.25896 * 17 16 15 19 19 C 1.52760 * 117.76726 * 162.85543 * 18 17 16 20 20 C 1.52795 * 117.70845 * 93.92696 * 18 17 16 21 21 C 1.46883 * 110.87320 * 190.28249 * 14 13 12 22 22 C 1.38632 * 120.50024 * 0.28653 * 12 11 10 23 23 C 1.37620 * 120.24469 * 359.45693 * 22 12 11 24 24 H 0.96996 * 120.00490 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.12599 * 0.04245 * 10 9 7 26 26 H 1.08007 * 119.87053 * 179.97438 * 11 10 9 27 27 H 1.09010 * 109.46960 * 329.99785 * 13 12 11 28 28 H 1.08994 * 109.47521 * 210.00157 * 13 12 11 29 29 H 1.09003 * 109.39644 * 68.75368 * 15 14 13 30 30 H 1.09000 * 109.40022 * 308.93552 * 15 14 13 31 31 H 1.09004 * 109.51533 * 57.69947 * 16 15 14 32 32 H 1.09004 * 109.52071 * 177.87052 * 16 15 14 33 33 H 1.08997 * 109.63250 * 173.97177 * 17 16 15 34 34 H 1.09005 * 109.63028 * 294.35920 * 17 16 15 35 35 H 1.09000 * 117.50964 * 359.80507 * 19 18 17 36 36 H 1.09002 * 117.50224 * 144.85615 * 19 18 17 37 37 H 1.09004 * 117.50028 * 215.23387 * 20 18 17 38 38 H 1.08999 * 117.51032 * 0.26187 * 20 18 17 39 39 H 1.08998 * 109.58964 * 57.98500 * 21 14 13 40 40 H 1.09000 * 109.68494 * 297.67286 * 21 14 13 41 41 H 1.08002 * 119.87429 * 179.70452 * 22 12 11 42 42 H 1.08002 * 120.12125 * 180.26676 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2862 9 6 1.3522 -2.4068 -0.3764 10 6 1.8261 -3.6499 0.0822 11 6 1.1801 -4.8065 -0.2905 12 6 0.0664 -4.7501 -1.1141 13 6 -0.6327 -6.0236 -1.5148 14 7 -1.6778 -6.3387 -0.5318 15 6 -2.7452 -5.3315 -0.5578 16 6 -3.7016 -5.5583 0.6147 17 6 -4.3596 -6.9355 0.4694 18 6 -3.2563 -7.9896 0.3283 19 6 -3.6326 -9.4504 0.5694 20 6 -2.7841 -8.6981 1.5971 21 6 -2.2131 -7.6888 -0.7516 22 6 -0.4060 -3.5314 -1.5763 23 6 0.2210 -2.3617 -1.2121 24 1 -0.4851 0.8400 0.0004 25 1 2.6931 -3.6960 0.7244 26 1 1.5423 -5.7618 0.0599 27 1 0.0900 -6.8389 -1.5507 28 1 -1.0852 -5.8958 -2.4981 29 1 -3.2960 -5.4118 -1.4950 30 1 -2.3064 -4.3368 -0.4799 31 1 -3.1456 -5.5175 1.5513 32 1 -4.4703 -4.7854 0.6125 33 1 -4.9598 -7.1497 1.3537 34 1 -4.9954 -6.9460 -0.4160 35 1 -4.6679 -9.6667 0.8329 36 1 -3.1345 -10.2055 -0.0388 37 1 -1.7277 -8.9582 1.6649 38 1 -3.2609 -8.4189 2.5367 39 1 -1.4043 -8.4169 -0.6907 40 1 -2.6797 -7.7431 -1.7351 41 1 -1.2717 -3.4996 -2.2213 42 1 -0.1513 -1.4131 -1.5698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336301405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:51 Heat of formation + Delta-G solvation = 33.868531 kcal Electronic energy + Delta-G solvation = -20542.139038 eV Core-core repulsion = 17679.589971 eV Total energy + Delta-G solvation = -2862.549067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.44637 -37.64783 -35.73523 -33.68824 -32.39679 -30.19202 -29.23685 -27.54294 -26.72582 -24.27825 -22.61761 -22.42018 -21.42722 -20.68844 -19.62246 -18.42121 -17.26183 -15.61023 -15.44655 -15.25726 -14.75932 -14.49588 -13.97021 -13.76176 -13.59360 -13.31419 -12.88164 -12.53717 -12.48375 -12.13868 -11.90692 -11.62548 -11.50888 -11.34962 -11.08637 -10.97996 -10.87640 -10.74731 -10.53095 -10.33292 -10.17349 -9.92536 -9.65144 -9.44504 -9.33879 -9.09917 -7.83158 -7.38632 -7.24540 -6.73464 -4.31500 2.75366 3.08227 3.11738 3.13804 3.19082 3.76913 3.95023 4.40053 4.66330 4.74622 4.82591 5.00292 5.10270 5.31391 5.48117 5.61348 5.63543 5.70545 5.74887 5.77796 5.86847 5.94025 5.97363 6.00409 6.07028 6.11520 6.17005 6.29851 6.32464 6.41325 6.46042 6.55391 6.59355 6.98083 7.10606 7.30647 7.41748 7.56906 7.58629 7.66239 7.93409 8.09127 8.18535 8.34220 8.67654 8.93247 9.01655 10.20855 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.033230 B = 0.003989 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.418600 B = 7017.374416 C = 7331.246640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.228 4.228 11 C -0.069 4.069 12 C -0.205 4.205 13 C 0.120 3.880 14 N -0.526 5.526 15 C 0.055 3.945 16 C -0.113 4.113 17 C -0.081 4.081 18 C -0.115 4.115 19 C -0.181 4.181 20 C -0.161 4.161 21 C 0.093 3.907 22 C -0.095 4.095 23 C -0.166 4.166 24 H 0.279 0.721 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.022 0.978 29 H 0.021 0.979 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.082 0.918 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.155 -10.942 -0.537 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.109 3.891 10 C -0.248 4.248 11 C -0.088 4.088 12 C -0.207 4.207 13 C -0.006 4.006 14 N -0.251 5.251 15 C -0.073 4.073 16 C -0.150 4.150 17 C -0.119 4.119 18 C -0.115 4.115 19 C -0.219 4.219 20 C -0.198 4.198 21 C -0.035 4.035 22 C -0.114 4.114 23 C -0.185 4.185 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.100 0.900 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.142 -10.768 -0.069 12.922 hybrid contribution -0.095 0.742 -0.685 1.014 sum -7.237 -10.026 -0.754 12.388 Atomic orbital electron populations 1.69840 1.07559 1.28986 1.35472 1.25895 0.94690 1.01234 0.92287 0.86310 0.81059 0.81126 0.78508 1.18426 1.19761 1.20033 1.19625 0.98135 0.91341 1.40199 0.90508 1.17611 0.91043 0.91997 0.88402 1.20963 1.03887 0.92928 1.06978 1.20312 0.95294 0.96303 0.96874 1.18834 1.00636 0.92491 1.08754 1.20727 0.92262 0.96374 0.91270 1.62002 1.11686 1.00537 1.50833 1.22081 0.91709 0.97640 0.95861 1.21562 0.97963 0.95570 0.99953 1.21195 0.95425 0.94239 1.01010 1.21403 0.98838 0.92615 0.98652 1.22971 1.00526 0.94499 1.03885 1.22911 1.00025 1.03468 0.93431 1.21586 0.95218 0.91947 0.94760 1.20511 0.98239 0.92876 0.99783 1.21269 0.99485 0.96586 1.01166 0.91026 0.89183 0.89581 0.91884 0.96003 0.96110 0.88968 0.90961 0.91870 0.92149 0.92181 0.89117 0.89124 0.88780 0.89164 0.91183 0.95309 0.89962 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.56 10.95 55.55 0.61 -19.95 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.11 3.00 5.58 -106.83 -0.60 2.41 16 10 C -0.23 -5.67 9.80 -38.87 -0.38 -6.06 16 11 C -0.07 -1.57 9.67 -39.66 -0.38 -1.95 16 12 C -0.21 -4.46 4.92 -104.33 -0.51 -4.97 16 13 C 0.12 2.16 5.10 -4.97 -0.03 2.14 16 14 N -0.53 -8.91 4.65 -236.10 -1.10 -10.00 16 15 C 0.05 0.92 5.15 -3.89 -0.02 0.90 16 16 C -0.11 -1.63 6.11 -26.57 -0.16 -1.79 16 17 C -0.08 -1.00 5.76 -26.44 -0.15 -1.15 16 18 C -0.11 -1.44 2.11 -154.54 -0.33 -1.77 16 19 C -0.18 -1.88 10.00 -26.83 -0.27 -2.15 16 20 C -0.16 -1.89 9.92 -26.82 -0.27 -2.16 16 21 C 0.09 1.31 5.19 -3.76 -0.02 1.29 16 22 C -0.10 -2.20 7.83 -39.66 -0.31 -2.51 16 23 C -0.17 -4.29 8.70 -38.87 -0.34 -4.63 16 24 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 25 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 26 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 27 H 0.06 1.06 7.97 -51.92 -0.41 0.65 16 28 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 29 H 0.02 0.33 8.13 -51.93 -0.42 -0.09 16 30 H 0.09 1.81 5.55 -51.93 -0.29 1.52 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 40 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 1.74 7.91 -52.49 -0.41 1.33 16 42 H 0.12 3.11 6.15 -52.49 -0.32 2.79 16 LS Contribution 333.87 15.07 5.03 5.03 Total: -1.00 -26.90 333.87 -11.58 -38.47 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.89 Total: 6.06 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: -4.19 Total: -33.32 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: -0.49 Total: -29.96 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.90 -11.58 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336301405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.341 kcal (2) G-P(sol) polarization free energy of solvation -26.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds