Wall clock time and date at job start Mon Mar 30 2020 01:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99789 * 2 1 4 4 H 1.48500 * 109.47305 * 274.51893 * 3 2 1 5 5 H 1.48502 * 109.47201 * 34.52396 * 3 2 1 6 6 H 1.48507 * 109.46854 * 154.52049 * 3 2 1 7 7 C 1.39941 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00148 * 162.20797 * 7 2 1 9 9 C 1.41397 * 120.00117 * 342.49004 * 7 2 1 10 10 C 1.40717 * 120.24284 * 334.66443 * 9 7 2 11 11 C 1.37618 * 119.74540 * 179.74021 * 10 9 7 12 12 C 1.38633 * 120.24562 * 0.53587 * 11 10 9 13 13 C 1.50705 * 119.74853 * 179.74110 * 12 11 10 14 14 N 1.46903 * 109.46955 * 269.97359 * 13 12 11 15 15 C 1.48480 * 110.99911 * 287.60881 * 14 13 12 16 16 C 1.54921 * 103.21832 * 200.16973 * 15 14 13 17 17 C 1.54446 * 102.94174 * 37.70766 * 16 15 14 18 18 H 1.09003 * 111.71363 * 98.97770 * 17 16 15 19 19 C 1.54112 * 109.76626 * 223.43770 * 17 16 15 20 20 C 1.54886 * 104.15652 * 137.82670 * 19 17 16 21 21 C 1.55646 * 102.35199 * 320.91869 * 20 19 17 22 22 C 1.47916 * 110.99883 * 170.00077 * 14 13 12 23 23 H 1.08999 * 111.35605 * 23.75212 * 22 14 13 24 24 C 1.38634 * 120.50628 * 359.71271 * 12 11 10 25 25 C 1.37621 * 120.24664 * 0.02562 * 24 12 11 26 26 H 0.96999 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.12568 * 359.96793 * 10 9 7 28 28 H 1.07997 * 119.88044 * 180.22646 * 11 10 9 29 29 H 1.09002 * 109.46925 * 29.97624 * 13 12 11 30 30 H 1.09002 * 109.46748 * 149.97622 * 13 12 11 31 31 H 1.08996 * 110.66900 * 318.60485 * 15 14 13 32 32 H 1.09000 * 110.66744 * 81.73333 * 15 14 13 33 33 H 1.08995 * 110.72294 * 279.34490 * 16 15 14 34 34 H 1.08997 * 110.87445 * 156.14267 * 16 15 14 35 35 H 1.09001 * 110.49402 * 256.49604 * 19 17 16 36 36 H 1.08998 * 110.49259 * 19.02866 * 19 17 16 37 37 H 1.09002 * 110.75602 * 79.85806 * 20 19 17 38 38 H 1.08999 * 110.75908 * 203.04487 * 20 19 17 39 39 H 1.09002 * 111.61988 * 279.76902 * 21 20 19 40 40 H 1.08995 * 109.63534 * 156.99656 * 21 20 19 41 41 H 1.07998 * 119.87965 * 180.02562 * 24 12 11 42 42 H 1.08001 * 120.13191 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3942 2.1016 -1.3957 5 1 1.4907 2.6232 0.7935 6 1 3.5844 1.4145 0.6023 7 6 2.0080 -1.2119 -0.0005 8 1 3.0493 -1.2342 -0.2863 9 6 1.3502 -2.4083 0.3673 10 6 0.2266 -2.3679 1.2134 11 6 -0.4091 -3.5381 1.5606 12 6 0.0604 -4.7543 1.0891 13 6 -0.6408 -6.0294 1.4811 14 7 -0.0450 -6.5559 2.7164 15 6 1.3042 -7.1195 2.4582 16 6 1.5347 -8.0561 3.6706 17 6 0.1360 -8.6669 3.9067 18 1 0.0505 -9.6608 3.4674 19 6 -0.1781 -8.6821 5.4154 20 6 -1.6581 -8.2331 5.4988 21 6 -1.7316 -7.1244 4.4089 22 6 -0.8534 -7.6676 3.2627 23 1 -1.4500 -8.1442 2.4849 24 6 1.1697 -4.8065 0.2592 25 6 1.8179 -3.6485 -0.1054 26 1 -0.4850 0.8401 0.0004 27 1 -0.1378 -1.4219 1.5859 28 1 -1.2739 -3.5093 2.2069 29 1 -1.6989 -5.8262 1.6459 30 1 -0.5317 -6.7640 0.6833 31 1 1.3127 -7.6862 1.5272 32 1 2.0536 -6.3284 2.4352 33 1 1.8590 -7.4867 4.5416 34 1 2.2592 -8.8336 3.4284 35 1 -0.0610 -9.6877 5.8195 36 1 0.4659 -7.9811 5.9464 37 1 -2.3270 -9.0628 5.2699 38 1 -1.8813 -7.8189 6.4820 39 1 -1.3374 -6.1759 4.7737 40 1 -2.7625 -7.0063 4.0755 41 1 1.5266 -5.7594 -0.1026 42 1 2.6821 -3.6913 -0.7516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336610569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:17 Heat of formation + Delta-G solvation = 6.986301 kcal Electronic energy + Delta-G solvation = -20532.699037 eV Core-core repulsion = 17668.984268 eV Total energy + Delta-G solvation = -2863.714768 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.76510 -37.51822 -34.99224 -33.54609 -31.90642 -30.00630 -29.22111 -27.51687 -26.89437 -25.50944 -23.23051 -21.17610 -20.77008 -20.59154 -19.67742 -19.02535 -17.23973 -16.31981 -15.44706 -15.23895 -14.37599 -14.32610 -14.11236 -13.76311 -13.65649 -13.22608 -12.81281 -12.53994 -12.14278 -11.86474 -11.71077 -11.67811 -11.36215 -11.08293 -10.99597 -10.91022 -10.85314 -10.75160 -10.64170 -10.51633 -10.35034 -10.26878 -10.22594 -9.51567 -9.32056 -9.08624 -7.99773 -7.38238 -7.23322 -6.71871 -4.30025 2.78826 3.09108 3.13016 3.13589 3.21732 3.96415 4.30616 4.49324 4.62848 4.71937 4.92806 5.24461 5.30512 5.37286 5.48056 5.50995 5.64227 5.71227 5.76349 5.78443 5.87026 5.93507 5.97862 6.01896 6.06822 6.15251 6.23648 6.29123 6.35746 6.39322 6.42638 6.50419 6.51991 7.00425 7.11501 7.29888 7.36257 7.44841 7.54583 7.67391 7.93290 8.10600 8.20700 8.35557 8.69779 8.94641 9.03366 10.23133 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034397 B = 0.003837 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.829571 B = 7294.961865 C = 7535.982235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.166 4.166 11 C -0.080 4.080 12 C -0.202 4.202 13 C 0.111 3.889 14 N -0.502 5.502 15 C 0.042 3.958 16 C -0.119 4.119 17 C -0.101 4.101 18 H 0.074 0.926 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.109 4.109 22 C 0.059 3.941 23 H 0.053 0.947 24 C -0.084 4.084 25 C -0.227 4.227 26 H 0.279 0.721 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.023 0.977 31 H 0.036 0.964 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -12.839 7.511 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.110 3.890 10 C -0.185 4.185 11 C -0.099 4.099 12 C -0.204 4.204 13 C -0.016 4.016 14 N -0.226 5.226 15 C -0.086 4.086 16 C -0.157 4.157 17 C -0.120 4.120 18 H 0.092 0.908 19 C -0.151 4.151 20 C -0.163 4.163 21 C -0.147 4.147 22 C -0.050 4.050 23 H 0.071 0.929 24 C -0.103 4.103 25 C -0.247 4.247 26 H 0.090 0.910 27 H 0.133 0.867 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.892 -12.237 7.846 14.659 hybrid contribution 0.249 0.138 -0.815 0.863 sum -1.643 -12.098 7.031 14.089 Atomic orbital electron populations 1.69837 1.07561 1.29071 1.35541 1.25886 0.94689 1.01212 0.92273 0.86353 0.80806 0.80881 0.78977 1.19657 1.20063 1.18462 1.19576 0.98014 0.91315 1.40585 0.90599 1.17606 0.91064 0.91930 0.88397 1.21273 0.99436 0.96686 1.01125 1.20471 0.98343 0.92534 0.98557 1.18822 1.01321 0.92705 1.07547 1.20901 0.97391 0.94505 0.88762 1.64998 1.01601 1.28087 1.27867 1.23170 0.92787 0.96884 0.95748 1.22617 0.95766 0.98146 0.99150 1.22549 0.95331 0.98064 0.96049 0.90778 1.22400 0.96784 1.00698 0.95242 1.22637 0.96345 0.98262 0.99015 1.22502 0.98554 0.98942 0.94674 1.23069 0.94643 0.90991 0.96249 0.92918 1.20329 0.95645 0.96090 0.98230 1.20930 1.03792 0.93021 1.06941 0.90983 0.86702 0.89614 0.91840 0.95861 0.94527 0.89706 0.90742 0.91790 0.92330 0.91193 0.91914 0.91823 0.89817 0.92570 0.90082 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.85 11.00 55.55 0.61 -20.24 16 2 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 3 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.47 -12.56 9.05 -37.74 -0.34 -12.90 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.11 3.05 5.57 -106.82 -0.59 2.45 16 10 C -0.17 -4.38 8.69 -38.87 -0.34 -4.72 16 11 C -0.08 -1.91 9.67 -39.66 -0.38 -2.29 16 12 C -0.20 -4.45 5.18 -104.33 -0.54 -4.99 16 13 C 0.11 2.02 4.87 -4.97 -0.02 2.00 16 14 N -0.50 -8.25 4.70 -222.83 -1.05 -9.29 16 15 C 0.04 0.64 5.65 -1.94 -0.01 0.63 16 16 C -0.12 -1.47 6.61 -24.96 -0.17 -1.64 16 17 C -0.10 -1.17 3.77 -88.41 -0.33 -1.51 16 18 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.11 -1.17 6.37 -25.16 -0.16 -1.33 16 20 C -0.12 -1.27 6.94 -24.33 -0.17 -1.44 16 21 C -0.11 -1.37 6.55 -24.66 -0.16 -1.53 16 22 C 0.06 0.80 3.26 -65.61 -0.21 0.59 16 23 H 0.05 0.71 7.81 -51.93 -0.41 0.31 16 24 C -0.08 -1.90 8.77 -39.66 -0.35 -2.24 16 25 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 26 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 27 H 0.12 3.14 6.22 -52.49 -0.33 2.82 16 28 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.06 1.12 8.02 -51.93 -0.42 0.71 16 30 H 0.02 0.41 7.78 -51.93 -0.40 0.01 16 31 H 0.04 0.55 7.82 -51.93 -0.41 0.15 16 32 H 0.08 1.46 7.83 -51.93 -0.41 1.06 16 33 H 0.07 0.94 7.28 -51.93 -0.38 0.56 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.76 7.28 -51.93 -0.38 0.38 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.21 7.97 -51.93 -0.41 0.79 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -27.20 329.76 -11.64 -38.84 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.89 Total: 4.94 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: -4.25 Total: -33.09 kcal Atomic # 7 Polarization: -29.10 SS G_CDS: -0.44 Total: -29.53 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.20 -11.64 -38.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336610569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.828 kcal (2) G-P(sol) polarization free energy of solvation -27.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds