Wall clock time and date at job start Mon Mar 30 2020 01:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99789 * 2 1 4 4 H 1.48500 * 109.47305 * 274.51893 * 3 2 1 5 5 H 1.48502 * 109.47201 * 34.52396 * 3 2 1 6 6 H 1.48507 * 109.46854 * 154.52049 * 3 2 1 7 7 C 1.39941 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00148 * 162.20797 * 7 2 1 9 9 C 1.41397 * 120.00117 * 342.49004 * 7 2 1 10 10 C 1.40717 * 120.24284 * 334.66443 * 9 7 2 11 11 C 1.37618 * 119.74540 * 179.74021 * 10 9 7 12 12 C 1.38633 * 120.24562 * 0.53587 * 11 10 9 13 13 C 1.50705 * 119.74853 * 179.74110 * 12 11 10 14 14 N 1.46903 * 109.46955 * 269.97359 * 13 12 11 15 15 C 1.48480 * 110.99911 * 287.60881 * 14 13 12 16 16 C 1.54921 * 103.21832 * 200.16973 * 15 14 13 17 17 C 1.54446 * 102.94174 * 37.70766 * 16 15 14 18 18 H 1.09003 * 111.71363 * 98.97770 * 17 16 15 19 19 C 1.54112 * 109.76626 * 223.43770 * 17 16 15 20 20 C 1.54886 * 104.15652 * 137.82670 * 19 17 16 21 21 C 1.55646 * 102.35199 * 320.91869 * 20 19 17 22 22 C 1.47916 * 110.99883 * 170.00077 * 14 13 12 23 23 H 1.08999 * 111.35605 * 23.75212 * 22 14 13 24 24 C 1.38634 * 120.50628 * 359.71271 * 12 11 10 25 25 C 1.37621 * 120.24664 * 0.02562 * 24 12 11 26 26 H 0.96999 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.12568 * 359.96793 * 10 9 7 28 28 H 1.07997 * 119.88044 * 180.22646 * 11 10 9 29 29 H 1.09002 * 109.46925 * 29.97624 * 13 12 11 30 30 H 1.09002 * 109.46748 * 149.97622 * 13 12 11 31 31 H 1.08996 * 110.66900 * 318.60485 * 15 14 13 32 32 H 1.09000 * 110.66744 * 81.73333 * 15 14 13 33 33 H 1.08995 * 110.72294 * 279.34490 * 16 15 14 34 34 H 1.08997 * 110.87445 * 156.14267 * 16 15 14 35 35 H 1.09001 * 110.49402 * 256.49604 * 19 17 16 36 36 H 1.08998 * 110.49259 * 19.02866 * 19 17 16 37 37 H 1.09002 * 110.75602 * 79.85806 * 20 19 17 38 38 H 1.08999 * 110.75908 * 203.04487 * 20 19 17 39 39 H 1.09002 * 111.61988 * 279.76902 * 21 20 19 40 40 H 1.08995 * 109.63534 * 156.99656 * 21 20 19 41 41 H 1.07998 * 119.87965 * 180.02562 * 24 12 11 42 42 H 1.08001 * 120.13191 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3942 2.1016 -1.3957 5 1 1.4907 2.6232 0.7935 6 1 3.5844 1.4145 0.6023 7 6 2.0080 -1.2119 -0.0005 8 1 3.0493 -1.2342 -0.2863 9 6 1.3502 -2.4083 0.3673 10 6 0.2266 -2.3679 1.2134 11 6 -0.4091 -3.5381 1.5606 12 6 0.0604 -4.7543 1.0891 13 6 -0.6408 -6.0294 1.4811 14 7 -0.0450 -6.5559 2.7164 15 6 1.3042 -7.1195 2.4582 16 6 1.5347 -8.0561 3.6706 17 6 0.1360 -8.6669 3.9067 18 1 0.0505 -9.6608 3.4674 19 6 -0.1781 -8.6821 5.4154 20 6 -1.6581 -8.2331 5.4988 21 6 -1.7316 -7.1244 4.4089 22 6 -0.8534 -7.6676 3.2627 23 1 -1.4500 -8.1442 2.4849 24 6 1.1697 -4.8065 0.2592 25 6 1.8179 -3.6485 -0.1054 26 1 -0.4850 0.8401 0.0004 27 1 -0.1378 -1.4219 1.5859 28 1 -1.2739 -3.5093 2.2069 29 1 -1.6989 -5.8262 1.6459 30 1 -0.5317 -6.7640 0.6833 31 1 1.3127 -7.6862 1.5272 32 1 2.0536 -6.3284 2.4352 33 1 1.8590 -7.4867 4.5416 34 1 2.2592 -8.8336 3.4284 35 1 -0.0610 -9.6877 5.8195 36 1 0.4659 -7.9811 5.9464 37 1 -2.3270 -9.0628 5.2699 38 1 -1.8813 -7.8189 6.4820 39 1 -1.3374 -6.1759 4.7737 40 1 -2.7625 -7.0063 4.0755 41 1 1.5266 -5.7594 -0.1026 42 1 2.6821 -3.6913 -0.7516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336610569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:17 Heat of formation + Delta-G solvation = -5.760458 kcal Electronic energy + Delta-G solvation = -20533.251777 eV Core-core repulsion = 17668.984268 eV Total energy + Delta-G solvation = -2864.267509 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.88334 -39.32619 -36.36201 -35.22422 -33.18193 -31.62415 -31.13506 -28.90755 -27.93451 -26.99105 -24.81030 -22.90661 -22.24920 -21.54666 -21.32146 -20.04339 -19.20300 -17.46365 -17.09751 -16.55827 -15.88176 -15.76226 -15.56497 -15.22228 -14.98379 -14.52853 -14.29851 -13.91758 -13.79593 -13.43529 -13.37527 -13.01646 -12.78032 -12.68009 -12.48633 -12.39842 -11.98174 -11.94047 -11.78611 -11.64465 -11.58054 -11.45854 -11.37374 -11.21755 -11.15554 -10.99216 -9.33721 -9.32751 -9.10246 -8.62753 -6.31987 0.96598 1.16050 1.37359 1.48378 1.53936 2.21152 2.69705 3.22109 3.51857 3.68101 3.80085 3.93295 4.24036 4.27293 4.30475 4.34864 4.48485 4.51932 4.56182 4.61363 4.64776 4.68105 4.78668 4.86555 4.91099 5.00193 5.06078 5.10456 5.13215 5.16952 5.22658 5.26915 5.33047 5.38523 5.41619 5.48195 5.58196 5.72343 5.95518 6.10026 6.13103 6.30189 6.32987 6.40694 6.72233 6.95697 7.05747 8.34890 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034397 B = 0.003837 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.829571 B = 7294.961865 C = 7535.982235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.073 0.927 9 C 0.080 3.920 10 C -0.189 4.189 11 C -0.087 4.087 12 C -0.190 4.190 13 C 0.118 3.882 14 N -0.518 5.518 15 C 0.038 3.962 16 C -0.112 4.112 17 C -0.096 4.096 18 H 0.092 0.908 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.111 4.111 22 C 0.055 3.945 23 H 0.058 0.942 24 C -0.082 4.082 25 C -0.243 4.243 26 H 0.287 0.713 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.109 0.891 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 -14.797 8.306 17.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.535 4.535 8 H 0.091 0.909 9 C 0.078 3.922 10 C -0.209 4.209 11 C -0.106 4.106 12 C -0.191 4.191 13 C -0.009 4.009 14 N -0.242 5.242 15 C -0.090 4.090 16 C -0.150 4.150 17 C -0.115 4.115 18 H 0.110 0.890 19 C -0.149 4.149 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.053 4.053 23 H 0.076 0.924 24 C -0.101 4.101 25 C -0.263 4.263 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.127 0.873 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.049 -14.218 8.646 16.766 hybrid contribution 0.239 0.609 -1.044 1.232 sum -1.810 -13.609 7.602 15.693 Atomic orbital electron populations 1.69890 1.09021 1.30437 1.36042 1.26746 0.95477 1.04478 0.91197 0.85217 0.79175 0.76042 0.79400 1.18637 1.18981 1.18344 1.19824 0.98226 0.92649 1.42776 0.90880 1.17942 0.91907 0.93054 0.89324 1.21224 1.00395 0.96907 1.02333 1.20690 0.98631 0.92582 0.98705 1.19252 1.00475 0.93845 1.05578 1.20784 0.97169 0.92849 0.90123 1.64893 1.02522 1.30146 1.26687 1.23170 0.91585 0.96699 0.97517 1.22588 0.97012 0.97975 0.97439 1.22577 0.93841 0.98140 0.96925 0.88963 1.22390 0.96514 1.01753 0.94193 1.22618 0.96712 0.97754 0.98433 1.22483 0.98347 0.98786 0.95316 1.23198 0.94964 0.90584 0.96531 0.92437 1.20607 0.95322 0.96467 0.97663 1.21144 1.04406 0.93330 1.07383 0.90229 0.88569 0.88281 0.91360 0.94721 0.94008 0.92375 0.91360 0.89672 0.90175 0.92047 0.90337 0.91092 0.92212 0.92276 0.87301 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.84 11.00 21.83 0.24 -44.60 16 2 C 0.04 1.85 5.14 85.25 0.44 2.29 16 3 Si 0.98 39.44 29.59 68.60 2.03 41.47 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.51 -28.40 9.05 23.46 0.21 -28.18 16 8 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.08 4.51 5.57 -21.29 -0.12 4.39 16 10 C -0.19 -10.42 8.69 22.73 0.20 -10.23 16 11 C -0.09 -4.24 9.67 22.22 0.21 -4.02 16 12 C -0.19 -8.30 5.18 -19.67 -0.10 -8.40 16 13 C 0.12 4.12 4.87 85.56 0.42 4.54 16 14 N -0.52 -16.33 4.70 -858.91 -4.03 -20.37 16 15 C 0.04 1.11 5.65 86.65 0.49 1.60 16 16 C -0.11 -2.51 6.61 31.74 0.21 -2.30 16 17 C -0.10 -1.92 3.77 -9.36 -0.04 -1.95 16 18 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 19 C -0.11 -1.92 6.37 31.61 0.20 -1.72 16 20 C -0.12 -2.04 6.94 32.15 0.22 -1.82 16 21 C -0.11 -2.60 6.55 31.94 0.21 -2.39 16 22 C 0.06 1.37 3.26 45.72 0.15 1.52 16 23 H 0.06 1.39 7.81 -2.39 -0.02 1.37 16 24 C -0.08 -3.68 8.77 22.22 0.19 -3.48 16 25 C -0.24 -12.41 9.80 22.73 0.22 -12.19 16 26 H 0.29 14.02 8.30 -92.71 -0.77 13.26 16 27 H 0.10 5.56 6.22 -2.91 -0.02 5.55 16 28 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 29 H 0.07 2.31 8.02 -2.39 -0.02 2.29 16 30 H 0.03 1.14 7.78 -2.39 -0.02 1.12 16 31 H 0.04 1.17 7.82 -2.39 -0.02 1.15 16 32 H 0.06 1.99 7.83 -2.39 -0.02 1.97 16 33 H 0.07 1.61 7.28 -2.39 -0.02 1.60 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.18 7.28 -2.39 -0.02 1.16 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.68 7.97 -2.39 -0.02 1.67 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 42 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -60.57 329.76 2.34 -58.23 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.98 Total: 27.61 kcal Atomic # 6 Polarization: -65.47 SS G_CDS: 3.12 Total: -62.35 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -3.79 Total: -64.97 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -60.57 2.34 -58.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336610569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.473 kcal (2) G-P(sol) polarization free energy of solvation -60.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds