Wall clock time and date at job start Mon Mar 30 2020 00:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99826 * 2 1 4 4 H 1.48493 * 109.47328 * 86.23412 * 3 2 1 5 5 H 1.48500 * 109.47093 * 326.23125 * 3 2 1 6 6 H 1.48505 * 109.46728 * 206.23362 * 3 2 1 7 7 C 1.38809 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99850 * 162.98989 * 7 2 1 9 9 N 1.36933 * 120.00002 * 342.99030 * 7 2 1 10 10 C 1.46934 * 120.62882 * 331.88674 * 9 7 2 11 11 C 1.52761 * 109.00589 * 233.53930 * 10 9 7 12 12 C 1.53027 * 109.39794 * 305.67468 * 11 10 9 13 13 C 1.53105 * 109.52827 * 61.31356 * 12 11 10 14 14 C 1.52832 * 109.41101 * 58.00204 * 13 12 11 15 15 C 1.53324 * 108.31356 * 171.82609 * 14 13 12 16 16 C 1.52728 * 108.38166 * 289.92999 * 15 14 13 17 17 C 1.50627 * 110.60294 * 50.87106 * 16 15 14 18 18 C 1.38917 * 117.72435 * 162.73578 * 17 16 15 19 19 C 1.37934 * 120.55280 * 179.68304 * 18 17 16 20 20 C 1.38270 * 119.76282 * 0.02562 * 19 18 17 21 21 C 1.37925 * 119.77204 * 0.14585 * 20 19 18 22 22 C 1.37641 * 122.60825 * 342.69795 * 17 16 15 23 23 C 1.46921 * 120.63000 * 152.16817 * 9 7 2 24 24 H 0.96994 * 120.00214 * 359.97438 * 1 2 3 25 25 H 1.08990 * 109.58796 * 353.37580 * 10 9 7 26 26 H 1.09003 * 109.58327 * 113.80539 * 10 9 7 27 27 H 1.09001 * 109.56085 * 185.63903 * 11 10 9 28 28 H 1.08997 * 109.38382 * 65.60844 * 11 10 9 29 29 H 1.08998 * 109.46352 * 301.29517 * 12 11 10 30 30 H 1.08999 * 109.45212 * 181.32193 * 12 11 10 31 31 H 1.08995 * 109.69303 * 291.53030 * 14 13 12 32 32 H 1.09000 * 109.69673 * 52.07863 * 14 13 12 33 33 H 1.09002 * 109.68128 * 49.65074 * 15 14 13 34 34 H 1.08999 * 109.68420 * 170.20832 * 15 14 13 35 35 H 1.09005 * 109.25065 * 171.16075 * 16 15 14 36 36 H 1.08995 * 109.25462 * 290.61573 * 16 15 14 37 37 H 1.07997 * 119.72741 * 359.71003 * 18 17 16 38 38 H 1.07991 * 120.11943 * 179.97438 * 19 18 17 39 39 H 1.08007 * 120.10993 * 180.12768 * 20 19 18 40 40 H 1.08002 * 119.73134 * 179.97438 * 21 20 19 41 41 H 1.09007 * 109.58876 * 246.00414 * 23 9 7 42 42 H 1.08996 * 109.59370 * 6.44666 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4180 2.0925 1.3970 5 1 1.4897 2.6284 -0.7782 6 1 3.5853 1.4185 -0.6189 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2226 -0.2731 9 7 1.3706 -2.3619 0.3480 10 6 0.2271 -2.3387 1.2704 11 6 0.4927 -3.3131 2.4165 12 6 0.8130 -4.6958 1.8443 13 6 2.0734 -4.6121 0.9791 14 6 3.2337 -4.0832 1.8216 15 6 4.5211 -4.2024 0.9975 16 6 4.8731 -5.6827 0.8656 17 6 3.6835 -6.4693 0.3809 18 6 3.9149 -7.7367 -0.1387 19 6 2.8672 -8.5102 -0.5932 20 6 1.5756 -8.0207 -0.5320 21 6 1.3441 -6.7612 -0.0197 22 6 2.3981 -5.9803 0.4369 23 6 1.8184 -3.6538 -0.1898 24 1 -0.4850 0.8400 0.0004 25 1 0.1003 -1.3326 1.6700 26 1 -0.6762 -2.6402 0.7402 27 1 -0.3903 -3.3783 3.0522 28 1 1.3389 -2.9579 3.0047 29 1 -0.0232 -5.0395 1.2355 30 1 0.9796 -5.3973 2.6617 31 1 3.0561 -3.0385 2.0765 32 1 3.3245 -4.6735 2.7334 33 1 4.3647 -3.7727 0.0080 34 1 5.3307 -3.6762 1.5030 35 1 5.6921 -5.7954 0.1551 36 1 5.1851 -6.0659 1.8371 37 1 4.9235 -8.1198 -0.1868 38 1 3.0552 -9.4943 -0.9962 39 1 0.7508 -8.6224 -0.8844 40 1 0.3350 -6.3793 0.0275 41 1 1.0464 -4.0667 -0.8392 42 1 2.7393 -3.5146 -0.7559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370282626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:12 Heat of formation + Delta-G solvation = 29.489328 kcal Electronic energy + Delta-G solvation = -21835.574729 eV Core-core repulsion = 18972.835766 eV Total energy + Delta-G solvation = -2862.738964 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.35836 -37.52131 -34.99059 -33.36897 -31.37050 -30.44941 -29.88313 -28.74012 -25.62859 -25.23157 -22.69775 -22.46099 -22.15036 -21.13626 -19.45453 -17.74480 -16.68731 -16.08681 -15.17806 -15.12943 -14.75666 -14.17506 -13.88043 -13.68864 -13.39267 -13.27822 -13.09184 -12.52043 -12.37524 -12.25590 -12.05633 -11.62677 -11.52611 -11.15192 -10.97690 -10.88219 -10.79114 -10.64938 -10.25919 -10.14925 -10.00773 -9.92709 -9.57898 -9.41439 -9.28805 -8.53123 -8.44885 -8.21906 -6.61206 -5.75564 -3.17699 1.61791 1.65283 3.39038 3.46390 3.47345 4.00727 4.51602 4.91563 4.98025 5.15641 5.23253 5.27089 5.39455 5.42380 5.51180 5.60646 5.68357 5.71497 5.79434 5.84361 5.90317 6.06878 6.10671 6.22184 6.26039 6.28917 6.36177 6.42083 6.47988 6.63001 6.67071 6.70145 6.71770 6.77156 6.79539 6.94111 7.00960 7.06570 7.14953 7.30286 7.44053 7.70644 7.83099 8.48055 9.24736 9.88238 10.45326 11.32677 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.005964 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.273774 B = 4693.867721 C = 5108.202367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.065 0.935 9 N -0.585 5.585 10 C 0.169 3.831 11 C -0.145 4.145 12 C -0.095 4.095 13 C -0.038 4.038 14 C -0.099 4.099 15 C -0.121 4.121 16 C -0.078 4.078 17 C -0.076 4.076 18 C -0.126 4.126 19 C -0.132 4.132 20 C -0.128 4.128 21 C -0.116 4.116 22 C -0.048 4.048 23 C 0.164 3.836 24 H 0.253 0.747 25 H 0.086 0.914 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.017 0.983 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.488 -13.683 2.660 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.307 5.307 10 C 0.044 3.956 11 C -0.184 4.184 12 C -0.133 4.133 13 C -0.039 4.039 14 C -0.137 4.137 15 C -0.158 4.158 16 C -0.115 4.115 17 C -0.076 4.076 18 C -0.144 4.144 19 C -0.150 4.150 20 C -0.146 4.146 21 C -0.134 4.134 22 C -0.048 4.048 23 C 0.037 3.963 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.034 0.966 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.375 -13.505 2.629 14.771 hybrid contribution 0.311 0.683 -0.083 0.755 sum 5.686 -12.822 2.547 14.256 Atomic orbital electron populations 1.70043 1.05235 1.25357 1.54050 1.25013 0.95228 0.98288 1.01057 0.86316 0.79195 0.83951 0.77573 1.21531 1.21865 1.20422 1.19173 0.92535 0.84732 1.41343 0.91710 1.43991 1.35524 1.01115 1.50082 1.20697 0.88626 0.98250 0.88057 1.22169 1.00094 0.96140 0.99969 1.21524 0.96369 0.97486 0.97896 1.20056 0.95463 0.90872 0.97559 1.21531 0.92980 1.02590 0.96558 1.21596 0.97977 0.94506 1.01707 1.20477 0.94940 0.95557 1.00542 1.19650 0.94357 0.94492 0.99144 1.21079 0.98694 0.94398 1.00262 1.20940 0.93085 0.99595 1.01410 1.21015 0.96699 0.96207 1.00662 1.21284 0.99287 0.94147 0.98715 1.19764 0.92063 0.95772 0.97220 1.20963 0.97498 0.86315 0.91537 0.93729 0.89606 0.96634 0.93413 0.92395 0.92608 0.93696 0.89469 0.93367 0.90979 0.92082 0.91467 0.91310 0.86804 0.86774 0.86649 0.86054 0.96565 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.05 11.20 55.49 0.62 -25.43 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.58 29.59 -169.99 -5.03 16.56 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.25 -6.66 9.58 -15.06 -0.14 -6.81 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.31 2.27 -172.53 -0.39 -14.71 16 10 C 0.17 4.00 5.28 -3.93 -0.02 3.98 16 11 C -0.14 -2.76 5.72 -26.84 -0.15 -2.91 16 12 C -0.10 -1.65 4.20 -26.66 -0.11 -1.76 16 13 C -0.04 -0.66 0.39 -155.54 -0.06 -0.72 16 14 C -0.10 -1.69 3.99 -26.65 -0.11 -1.79 16 15 C -0.12 -1.84 5.93 -26.70 -0.16 -2.00 16 16 C -0.08 -1.04 5.67 -28.06 -0.16 -1.20 16 17 C -0.08 -1.13 5.74 -104.62 -0.60 -1.73 16 18 C -0.13 -1.65 9.61 -39.44 -0.38 -2.03 16 19 C -0.13 -1.66 10.05 -39.68 -0.40 -2.06 16 20 C -0.13 -1.70 10.05 -39.68 -0.40 -2.09 16 21 C -0.12 -1.77 8.85 -39.45 -0.35 -2.12 16 22 C -0.05 -0.77 4.71 -104.59 -0.49 -1.26 16 23 C 0.16 3.47 5.04 -3.67 -0.02 3.45 16 24 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.11 6.51 -51.93 -0.34 0.78 16 29 H 0.06 0.96 6.45 -51.93 -0.33 0.63 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.71 6.22 -51.93 -0.32 1.38 16 32 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.07 1.23 6.15 -51.93 -0.32 0.91 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.11 1.23 8.05 -52.49 -0.42 0.81 16 38 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 40 H 0.12 1.82 6.34 -52.49 -0.33 1.48 16 41 H 0.02 0.37 7.98 -51.93 -0.41 -0.05 16 42 H 0.06 1.20 6.04 -51.93 -0.31 0.88 16 LS Contribution 313.13 15.07 4.72 4.72 Total: -1.00 -28.51 313.13 -10.18 -38.69 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.46 Total: 1.24 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -3.64 Total: -21.08 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.23 Total: -40.13 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.51 -10.18 -38.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370282626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.182 kcal (2) G-P(sol) polarization free energy of solvation -28.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds