Wall clock time and date at job start Mon Mar 30 2020 00:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99826 * 2 1 4 4 H 1.48493 * 109.47328 * 86.23412 * 3 2 1 5 5 H 1.48500 * 109.47093 * 326.23125 * 3 2 1 6 6 H 1.48505 * 109.46728 * 206.23362 * 3 2 1 7 7 C 1.38809 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99850 * 162.98989 * 7 2 1 9 9 N 1.36933 * 120.00002 * 342.99030 * 7 2 1 10 10 C 1.46934 * 120.62882 * 331.88674 * 9 7 2 11 11 C 1.52761 * 109.00589 * 233.53930 * 10 9 7 12 12 C 1.53027 * 109.39794 * 305.67468 * 11 10 9 13 13 C 1.53105 * 109.52827 * 61.31356 * 12 11 10 14 14 C 1.52832 * 109.41101 * 58.00204 * 13 12 11 15 15 C 1.53324 * 108.31356 * 171.82609 * 14 13 12 16 16 C 1.52728 * 108.38166 * 289.92999 * 15 14 13 17 17 C 1.50627 * 110.60294 * 50.87106 * 16 15 14 18 18 C 1.38917 * 117.72435 * 162.73578 * 17 16 15 19 19 C 1.37934 * 120.55280 * 179.68304 * 18 17 16 20 20 C 1.38270 * 119.76282 * 0.02562 * 19 18 17 21 21 C 1.37925 * 119.77204 * 0.14585 * 20 19 18 22 22 C 1.37641 * 122.60825 * 342.69795 * 17 16 15 23 23 C 1.46921 * 120.63000 * 152.16817 * 9 7 2 24 24 H 0.96994 * 120.00214 * 359.97438 * 1 2 3 25 25 H 1.08990 * 109.58796 * 353.37580 * 10 9 7 26 26 H 1.09003 * 109.58327 * 113.80539 * 10 9 7 27 27 H 1.09001 * 109.56085 * 185.63903 * 11 10 9 28 28 H 1.08997 * 109.38382 * 65.60844 * 11 10 9 29 29 H 1.08998 * 109.46352 * 301.29517 * 12 11 10 30 30 H 1.08999 * 109.45212 * 181.32193 * 12 11 10 31 31 H 1.08995 * 109.69303 * 291.53030 * 14 13 12 32 32 H 1.09000 * 109.69673 * 52.07863 * 14 13 12 33 33 H 1.09002 * 109.68128 * 49.65074 * 15 14 13 34 34 H 1.08999 * 109.68420 * 170.20832 * 15 14 13 35 35 H 1.09005 * 109.25065 * 171.16075 * 16 15 14 36 36 H 1.08995 * 109.25462 * 290.61573 * 16 15 14 37 37 H 1.07997 * 119.72741 * 359.71003 * 18 17 16 38 38 H 1.07991 * 120.11943 * 179.97438 * 19 18 17 39 39 H 1.08007 * 120.10993 * 180.12768 * 20 19 18 40 40 H 1.08002 * 119.73134 * 179.97438 * 21 20 19 41 41 H 1.09007 * 109.58876 * 246.00414 * 23 9 7 42 42 H 1.08996 * 109.59370 * 6.44666 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4180 2.0925 1.3970 5 1 1.4897 2.6284 -0.7782 6 1 3.5853 1.4185 -0.6189 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2226 -0.2731 9 7 1.3706 -2.3619 0.3480 10 6 0.2271 -2.3387 1.2704 11 6 0.4927 -3.3131 2.4165 12 6 0.8130 -4.6958 1.8443 13 6 2.0734 -4.6121 0.9791 14 6 3.2337 -4.0832 1.8216 15 6 4.5211 -4.2024 0.9975 16 6 4.8731 -5.6827 0.8656 17 6 3.6835 -6.4693 0.3809 18 6 3.9149 -7.7367 -0.1387 19 6 2.8672 -8.5102 -0.5932 20 6 1.5756 -8.0207 -0.5320 21 6 1.3441 -6.7612 -0.0197 22 6 2.3981 -5.9803 0.4369 23 6 1.8184 -3.6538 -0.1898 24 1 -0.4850 0.8400 0.0004 25 1 0.1003 -1.3326 1.6700 26 1 -0.6762 -2.6402 0.7402 27 1 -0.3903 -3.3783 3.0522 28 1 1.3389 -2.9579 3.0047 29 1 -0.0232 -5.0395 1.2355 30 1 0.9796 -5.3973 2.6617 31 1 3.0561 -3.0385 2.0765 32 1 3.3245 -4.6735 2.7334 33 1 4.3647 -3.7727 0.0080 34 1 5.3307 -3.6762 1.5030 35 1 5.6921 -5.7954 0.1551 36 1 5.1851 -6.0659 1.8371 37 1 4.9235 -8.1198 -0.1868 38 1 3.0552 -9.4943 -0.9962 39 1 0.7508 -8.6224 -0.8844 40 1 0.3350 -6.3793 0.0275 41 1 1.0464 -4.0667 -0.8392 42 1 2.7393 -3.5146 -0.7559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370282626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:11 Heat of formation + Delta-G solvation = 16.842200 kcal Electronic energy + Delta-G solvation = -21836.123150 eV Core-core repulsion = 18972.835766 eV Total energy + Delta-G solvation = -2863.287384 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62736 -38.92498 -36.37660 -34.99972 -32.89013 -32.31361 -31.02149 -30.01925 -27.31844 -26.89189 -23.93951 -23.90605 -23.63400 -22.58609 -20.79591 -19.25101 -18.47905 -17.36099 -16.78811 -16.30893 -16.26713 -15.77266 -15.27625 -15.17545 -14.90300 -14.71035 -14.35785 -14.05198 -13.89401 -13.50834 -13.38387 -13.10244 -13.03037 -12.72553 -12.68319 -12.30542 -12.25433 -12.12006 -11.92316 -11.85332 -11.70381 -11.49688 -11.08618 -10.88067 -10.79424 -10.51673 -9.55773 -9.39033 -8.62205 -7.84978 -5.30154 0.57182 0.57633 1.46296 1.47519 1.56455 2.51614 2.94420 3.29229 3.60309 3.79502 3.89702 3.98352 4.06742 4.17849 4.31304 4.35131 4.39670 4.42591 4.53235 4.59668 4.65124 4.74099 4.76691 4.87584 4.99238 5.00186 5.03441 5.07811 5.11719 5.20788 5.26784 5.29535 5.33604 5.36412 5.50987 5.56768 5.57925 5.67125 5.71335 5.74503 5.82346 5.95613 6.24526 6.40794 7.16678 7.87531 8.40546 9.21083 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.005964 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.273774 B = 4693.867721 C = 5108.202367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.963 3.037 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.599 5.599 10 C 0.177 3.823 11 C -0.133 4.133 12 C -0.090 4.090 13 C -0.026 4.026 14 C -0.095 4.095 15 C -0.118 4.118 16 C -0.072 4.072 17 C -0.087 4.087 18 C -0.127 4.127 19 C -0.127 4.127 20 C -0.131 4.131 21 C -0.133 4.133 22 C -0.072 4.072 23 C 0.167 3.833 24 H 0.249 0.751 25 H 0.053 0.947 26 H -0.010 1.010 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.113 0.887 41 H -0.001 1.001 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.473 -16.133 3.125 18.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.321 5.321 10 C 0.051 3.949 11 C -0.172 4.172 12 C -0.128 4.128 13 C -0.027 4.027 14 C -0.133 4.133 15 C -0.156 4.156 16 C -0.109 4.109 17 C -0.087 4.087 18 C -0.145 4.145 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.072 4.072 23 C 0.041 3.959 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.008 0.992 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.131 0.869 41 H 0.017 0.983 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.379 -15.985 3.098 17.876 hybrid contribution -0.315 1.357 -0.296 1.424 sum 7.065 -14.628 2.801 16.484 Atomic orbital electron populations 1.70198 1.06656 1.25669 1.55737 1.25743 0.95956 1.01306 1.01519 0.85310 0.78234 0.79869 0.77413 1.21227 1.22348 1.19309 1.19447 0.92637 0.85848 1.40351 0.91822 1.44178 1.35527 1.01772 1.50642 1.20504 0.87636 0.97681 0.89083 1.21997 1.00931 0.95983 0.98250 1.21489 0.96350 0.96481 0.98468 1.19812 0.95858 0.91167 0.95907 1.21448 0.93675 1.00748 0.97386 1.21549 0.97494 0.96504 1.00041 1.20473 0.94946 0.93447 1.02048 1.19883 0.94000 0.95544 0.99309 1.21410 1.00325 0.93574 0.99200 1.21354 0.92418 1.00713 1.00002 1.21305 0.98135 0.95527 0.99946 1.21345 0.98797 0.95256 0.99684 1.19642 0.93324 0.95009 0.99258 1.20995 0.96177 0.85717 0.92974 0.94230 0.92857 0.99174 0.91503 0.92420 0.92849 0.91411 0.92620 0.91718 0.93454 0.90806 0.89610 0.89472 0.84041 0.83660 0.84514 0.86925 0.98326 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.29 11.20 21.65 0.24 -56.05 16 2 C -0.05 -2.83 4.91 84.86 0.42 -2.41 16 3 Si 0.96 45.45 29.59 68.60 2.03 47.48 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.25 -14.02 9.58 84.03 0.81 -13.21 16 8 H 0.06 3.48 7.88 -2.91 -0.02 3.45 16 9 N -0.60 -30.52 2.27 -699.75 -1.59 -32.11 16 10 C 0.18 8.74 5.28 86.22 0.46 9.20 16 11 C -0.13 -5.11 5.72 30.52 0.17 -4.94 16 12 C -0.09 -3.10 4.20 30.64 0.13 -2.97 16 13 C -0.03 -0.90 0.39 -52.85 -0.02 -0.93 16 14 C -0.10 -3.17 3.99 30.65 0.12 -3.04 16 15 C -0.12 -3.48 5.93 30.61 0.18 -3.30 16 16 C -0.07 -1.71 5.67 29.73 0.17 -1.54 16 17 C -0.09 -2.34 5.74 -19.87 -0.11 -2.46 16 18 C -0.13 -2.83 9.61 22.36 0.21 -2.61 16 19 C -0.13 -2.68 10.05 22.21 0.22 -2.45 16 20 C -0.13 -3.13 10.05 22.20 0.22 -2.91 16 21 C -0.13 -3.88 8.85 22.35 0.20 -3.68 16 22 C -0.07 -2.23 4.71 -19.84 -0.09 -2.32 16 23 C 0.17 7.33 5.04 86.39 0.44 7.77 16 24 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 25 H 0.05 2.97 6.06 -2.39 -0.01 2.96 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 28 H 0.06 2.23 6.51 -2.39 -0.02 2.21 16 29 H 0.05 1.85 6.45 -2.39 -0.02 1.83 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 2.20 6.22 -2.39 -0.01 2.18 16 32 H 0.06 1.93 8.09 -2.39 -0.02 1.91 16 33 H 0.05 1.61 6.15 -2.39 -0.01 1.60 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.09 1.72 8.13 -2.38 -0.02 1.71 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.14 2.34 8.05 -2.91 -0.02 2.31 16 38 H 0.15 2.15 8.06 -2.92 -0.02 2.13 16 39 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.11 3.38 6.34 -2.91 -0.02 3.36 16 41 H 0.00 -0.05 7.98 -2.38 -0.02 -0.07 16 42 H 0.05 2.09 6.04 -2.39 -0.01 2.08 16 Total: -1.00 -63.63 313.13 5.20 -58.44 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.99 Total: 14.05 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 3.52 Total: -31.80 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -1.35 Total: -88.16 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -63.63 5.20 -58.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370282626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.280 kcal (2) G-P(sol) polarization free energy of solvation -63.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds