Wall clock time and date at job start Mon Mar 30 2020 01:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99532 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47362 * 149.99991 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.47214 * 111.00250 * 66.04892 * 12 11 10 14 14 C 1.53079 * 108.52684 * 54.13207 * 13 12 11 15 15 C 1.50338 * 109.70359 * 49.21235 * 14 13 12 16 16 C 1.31482 * 122.67565 * 343.44471 * 15 14 13 17 17 C 1.47805 * 118.46881 * 180.34262 * 16 15 14 18 18 C 1.39543 * 120.13803 * 244.72320 * 17 16 15 19 19 C 1.37978 * 119.85453 * 179.76626 * 18 17 16 20 20 C 1.38341 * 120.13878 * 0.48880 * 19 18 17 21 21 C 1.38340 * 120.28965 * 359.76611 * 20 19 18 22 22 C 1.37970 * 120.14427 * 359.97438 * 21 20 19 23 23 C 1.46842 * 110.99597 * 189.05108 * 12 11 10 24 24 H 0.96991 * 119.99886 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 26 26 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 27 27 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 28 28 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 29 29 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 30 30 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 31 31 H 1.08994 * 109.62964 * 173.84660 * 13 12 11 32 32 H 1.09002 * 109.62978 * 294.42618 * 13 12 11 33 33 H 1.09007 * 109.43385 * 169.27873 * 14 13 12 34 34 H 1.08999 * 109.43699 * 289.18523 * 14 13 12 35 35 H 1.07992 * 118.66376 * 163.46658 * 15 14 13 36 36 H 1.07998 * 120.07174 * 359.97438 * 18 17 16 37 37 H 1.07996 * 119.92661 * 180.23559 * 19 18 17 38 38 H 1.08003 * 119.85471 * 179.74522 * 20 19 18 39 39 H 1.08000 * 119.93127 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.07704 * 179.97438 * 22 21 20 41 41 H 1.08998 * 109.33610 * 47.99269 * 23 12 11 42 42 H 1.08997 * 109.33930 * 167.51158 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 7 6.0413 -4.0214 0.0014 13 6 5.6911 -4.7053 -1.2543 14 6 6.2076 -3.8660 -2.4257 15 6 7.6454 -3.4961 -2.1891 16 6 8.2156 -3.5830 -1.0075 17 6 9.6339 -3.1874 -0.8789 18 6 10.5979 -4.1370 -0.5381 19 6 11.9210 -3.7624 -0.4243 20 6 12.2910 -2.4465 -0.6373 21 6 11.3394 -1.4992 -0.9702 22 6 10.0139 -1.8619 -1.0924 23 6 7.4931 -4.0661 0.2171 24 1 -0.4849 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6803 -0.8889 27 1 3.6586 -3.1502 -0.8892 28 1 3.6580 -3.1505 0.8908 29 1 5.9149 -2.1225 -0.8890 30 1 5.9150 -2.1226 0.8909 31 1 6.1565 -5.6907 -1.2767 32 1 4.6082 -4.8070 -1.3262 33 1 6.1283 -4.4423 -3.3475 34 1 5.6101 -2.9585 -2.5129 35 1 8.2339 -3.1445 -3.0236 36 1 10.3095 -5.1637 -0.3672 37 1 12.6686 -4.4971 -0.1644 38 1 13.3274 -2.1575 -0.5429 39 1 11.6347 -0.4735 -1.1347 40 1 9.2718 -1.1214 -1.3519 41 1 7.7521 -3.4299 1.0633 42 1 7.7945 -5.0910 0.4335 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375280781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:16 Heat of formation + Delta-G solvation = 31.730947 kcal Electronic energy + Delta-G solvation = -20140.636231 eV Core-core repulsion = 17277.994471 eV Total energy + Delta-G solvation = -2862.641760 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.08471 -38.71755 -34.61512 -33.14383 -31.82700 -31.30167 -31.03004 -29.05783 -27.34047 -24.22209 -23.95562 -22.64272 -22.33351 -21.01879 -19.81739 -17.90090 -17.13426 -16.61245 -16.05560 -15.40659 -15.21370 -14.98531 -14.23394 -14.18456 -13.94967 -13.63456 -13.43674 -13.29396 -12.77616 -12.57524 -12.50964 -12.16832 -11.77848 -11.66752 -11.42449 -11.29115 -11.24844 -10.86440 -10.81481 -10.52243 -9.89915 -9.63725 -9.54746 -9.28971 -9.14214 -9.12806 -8.63061 -8.50737 -8.03848 -6.01210 -3.98630 1.03909 1.21247 2.06101 3.32077 3.39583 3.43801 3.58873 4.12362 4.47846 4.50543 4.74561 4.76677 4.91828 4.96356 5.08110 5.19689 5.23878 5.32006 5.33610 5.36995 5.45784 5.60400 5.69627 5.76640 5.82575 5.83972 5.86219 6.06406 6.09066 6.20087 6.25518 6.30526 6.36116 6.49489 6.58397 6.60910 6.74832 6.82833 6.94657 7.24843 7.29119 7.40835 7.50351 7.83912 8.58523 9.04689 9.61755 11.12469 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.003902 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.186511 B = 7173.457116 C = 7929.813210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.097 4.097 11 C 0.046 3.954 12 N -0.525 5.525 13 C 0.051 3.949 14 C -0.131 4.131 15 C -0.130 4.130 16 C -0.128 4.128 17 C -0.041 4.041 18 C -0.110 4.110 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.119 4.119 22 C -0.110 4.110 23 C 0.095 3.905 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.008 0.992 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.841 -8.031 -3.179 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.135 4.135 11 C -0.081 4.081 12 N -0.246 5.246 13 C -0.078 4.078 14 C -0.169 4.169 15 C -0.149 4.149 16 C -0.130 4.130 17 C -0.042 4.042 18 C -0.128 4.128 19 C -0.138 4.138 20 C -0.144 4.144 21 C -0.137 4.137 22 C -0.128 4.128 23 C -0.034 4.034 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.099 0.901 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 23.429 -8.171 -2.753 24.966 hybrid contribution 0.890 1.501 -0.803 1.921 sum 24.320 -6.670 -3.557 25.468 Atomic orbital electron populations 1.69917 1.06289 1.26798 1.51455 1.25037 0.94715 0.99132 0.94686 0.86786 0.80403 0.83719 0.78420 1.20397 1.21411 1.19033 1.21156 0.89538 0.94423 1.50388 0.91020 1.19545 0.97103 0.92411 0.95999 1.21457 0.90989 0.99439 1.01571 1.22428 0.97881 0.87271 1.00536 1.62805 1.10566 1.17394 1.33803 1.22269 1.01870 0.96748 0.86875 1.21145 0.93480 1.02002 1.00321 1.22529 0.96447 0.99532 0.96351 1.20587 0.92815 1.02597 0.96961 1.19044 0.92867 0.93361 0.98916 1.21245 0.92608 0.99182 0.99779 1.21079 0.96050 0.96286 1.00426 1.21179 0.99393 0.93446 1.00411 1.21101 0.93088 0.99529 0.99973 1.21349 0.96200 0.95419 0.99833 1.21012 0.86878 1.01206 0.94286 0.92804 0.96714 0.97418 0.92886 0.92042 0.94444 0.91495 0.91060 0.89430 0.90474 0.89453 0.87750 0.86003 0.86102 0.86272 0.86062 0.86003 0.90069 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.31 13.96 55.43 0.77 -27.54 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -1.94 5.08 -26.73 -0.14 -2.08 16 11 C 0.05 0.77 4.36 -3.82 -0.02 0.75 16 12 N -0.52 -7.62 5.03 -236.13 -1.19 -8.80 16 13 C 0.05 0.66 5.64 -3.61 -0.02 0.64 16 14 C -0.13 -1.62 5.53 -28.02 -0.15 -1.77 16 15 C -0.13 -1.58 8.89 -36.32 -0.32 -1.90 16 16 C -0.13 -1.54 4.94 -102.80 -0.51 -2.05 16 17 C -0.04 -0.47 5.15 -105.01 -0.54 -1.01 16 18 C -0.11 -1.11 9.74 -39.19 -0.38 -1.49 16 19 C -0.12 -1.08 10.03 -39.64 -0.40 -1.48 16 20 C -0.13 -1.12 10.04 -39.51 -0.40 -1.52 16 21 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 22 C -0.11 -1.23 9.68 -39.20 -0.38 -1.61 16 23 C 0.09 1.18 5.60 -5.26 -0.03 1.15 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 26 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 27 H 0.05 1.05 6.68 -51.93 -0.35 0.70 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.04 0.63 5.47 -51.93 -0.28 0.34 16 30 H 0.07 1.13 7.92 -51.93 -0.41 0.72 16 31 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.09 1.21 6.76 -51.93 -0.35 0.86 16 33 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.09 1.23 6.79 -51.93 -0.35 0.87 16 35 H 0.10 1.20 7.98 -52.49 -0.42 0.79 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.08 1.03 7.90 -51.93 -0.41 0.62 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 334.44 15.07 5.04 5.04 Total: -1.00 -31.13 334.44 -11.00 -42.13 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.73 Total: -0.39 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -4.22 Total: -27.81 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.41 Total: -36.34 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.13 -11.00 -42.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375280781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.856 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds