Wall clock time and date at job start Mon Mar 30 2020 01:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86797 * 120.00008 * 2 1 4 4 H 1.48499 * 109.46991 * 270.00179 * 3 2 1 5 5 H 1.48499 * 109.47007 * 30.00051 * 3 2 1 6 6 H 1.48497 * 109.47069 * 150.00282 * 3 2 1 7 7 C 1.39864 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00053 * 192.06191 * 7 2 1 9 9 C 1.41141 * 120.00164 * 12.06160 * 7 2 1 10 10 C 1.40888 * 120.15852 * 208.72335 * 9 7 2 11 11 C 1.36336 * 119.83740 * 180.02562 * 10 9 7 12 12 C 1.39568 * 120.16231 * 0.02562 * 11 10 9 13 13 N 1.38852 * 119.84351 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00251 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.07026 * 339.34402 * 14 13 12 16 16 C 1.54469 * 110.09497 * 100.95231 * 14 13 12 17 17 C 1.54949 * 104.23176 * 142.71670 * 16 14 13 18 18 C 1.55063 * 102.85767 * 322.45158 * 17 16 14 19 19 C 1.53173 * 110.09307 * 217.80455 * 14 13 12 20 20 C 1.53010 * 115.37585 * 10.46841 * 19 14 13 21 21 C 1.53911 * 86.85508 * 92.14656 * 20 19 14 22 22 C 1.53024 * 115.34302 * 110.78157 * 19 14 13 23 23 C 1.39565 * 120.31515 * 0.25439 * 12 11 10 24 24 C 1.36343 * 120.15998 * 359.47752 * 23 12 11 25 25 H 0.96991 * 120.00158 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.07842 * 0.03827 * 10 9 7 27 27 H 1.07999 * 119.91858 * 179.97438 * 11 10 9 28 28 H 0.97005 * 120.00337 * 359.97438 * 13 12 11 29 29 H 1.08997 * 110.47727 * 261.40935 * 16 14 13 30 30 H 1.08999 * 110.47613 * 24.02794 * 16 14 13 31 31 H 1.09000 * 110.73669 * 80.79157 * 17 16 14 32 32 H 1.08997 * 110.73508 * 204.11025 * 17 16 14 33 33 H 1.09005 * 110.52689 * 278.68245 * 18 17 16 34 34 H 1.09000 * 110.52963 * 155.92912 * 18 17 16 35 35 H 1.09002 * 113.65178 * 337.65297 * 20 19 14 36 36 H 1.09004 * 113.65029 * 206.63486 * 20 19 14 37 37 H 1.09004 * 113.59175 * 139.44856 * 21 20 19 38 38 H 1.09003 * 113.59408 * 270.28150 * 21 20 19 39 39 H 1.08997 * 113.65540 * 153.33050 * 22 19 14 40 40 H 1.09001 * 113.73309 * 22.31812 * 22 19 14 41 41 H 1.08003 * 119.91941 * 179.72294 * 23 12 11 42 42 H 1.08003 * 120.08167 * 180.27397 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6526 0.7000 6 1 3.5406 1.4401 0.7000 7 6 2.0084 -1.2113 -0.0005 8 1 3.0705 -1.2217 0.1949 9 6 1.3261 -2.4200 -0.2565 10 6 1.7929 -3.6276 0.2990 11 6 1.1291 -4.7915 0.0470 12 6 -0.0100 -4.7887 -0.7594 13 7 -0.6807 -5.9779 -1.0121 14 6 -1.8771 -5.9789 -1.8576 15 1 -2.3060 -4.9778 -1.8999 16 6 -1.5214 -6.4658 -3.2798 17 6 -2.7492 -7.3060 -3.7129 18 6 -3.1574 -8.0227 -2.3999 19 6 -2.9080 -6.9704 -1.3096 20 6 -2.6019 -7.5338 0.0797 21 6 -3.4422 -6.3735 0.6424 22 6 -4.1694 -6.3414 -0.7138 23 6 -0.4749 -3.5971 -1.3178 24 6 0.1758 -2.4248 -1.0699 25 1 -0.4850 0.8400 0.0004 26 1 2.6743 -3.6313 0.9230 27 1 1.4860 -5.7181 0.4719 28 1 -0.3571 -6.8082 -0.6288 29 1 -1.3842 -5.6173 -3.9501 30 1 -0.6244 -7.0845 -3.2578 31 1 -3.5533 -6.6605 -4.0663 32 1 -2.4704 -8.0309 -4.4777 33 1 -2.5330 -8.9006 -2.2336 34 1 -4.2107 -8.3015 -2.4281 35 1 -1.5473 -7.4813 0.3502 36 1 -3.0380 -8.5165 0.2589 37 1 -4.0838 -6.6631 1.4746 38 1 -2.8618 -5.4739 0.8475 39 1 -5.0438 -6.9907 -0.7566 40 1 -4.3713 -5.3341 -1.0780 41 1 -1.3544 -3.6029 -1.9445 42 1 -0.1876 -1.5027 -1.4991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394808775.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:43 Heat of formation + Delta-G solvation = 37.137244 kcal Electronic energy + Delta-G solvation = -20848.318416 eV Core-core repulsion = 17985.911091 eV Total energy + Delta-G solvation = -2862.407325 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.36919 -37.63865 -35.13154 -34.12658 -32.50274 -29.47706 -28.90338 -27.40019 -26.24230 -25.66894 -23.91649 -21.77378 -20.90611 -20.69096 -19.94312 -17.82155 -17.17199 -16.45024 -15.72110 -15.20996 -14.97283 -14.75736 -13.93863 -13.61950 -13.31662 -12.80079 -12.76086 -12.61116 -12.34175 -12.08083 -12.01151 -11.61384 -11.47118 -11.22979 -11.02351 -10.93586 -10.89390 -10.70309 -10.52288 -10.39369 -10.21108 -9.96823 -9.87645 -9.63031 -9.20593 -9.18103 -8.49663 -7.46599 -6.54380 -6.30513 -4.02026 2.94937 3.12624 3.17766 3.21193 3.37617 4.09645 4.24483 4.53738 4.64719 4.75635 4.83981 5.02447 5.06962 5.31214 5.31768 5.58047 5.64347 5.74418 5.77213 5.84178 5.86233 5.91254 5.97496 6.04304 6.08918 6.11876 6.26699 6.29533 6.31320 6.38214 6.50172 6.53565 6.65847 6.96082 6.99599 7.23693 7.40455 7.60380 7.73070 7.87999 8.19147 8.33586 8.54596 8.74426 8.84656 9.10797 9.18821 10.45897 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029572 B = 0.004261 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.606713 B = 6569.382267 C = 6589.867336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.468 4.468 8 H 0.071 0.929 9 C 0.071 3.929 10 C -0.181 4.181 11 C -0.165 4.165 12 C 0.102 3.898 13 N -0.749 5.749 14 C 0.178 3.822 15 H 0.085 0.915 16 C -0.138 4.138 17 C -0.124 4.124 18 C -0.109 4.109 19 C -0.093 4.093 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.170 4.170 24 C -0.115 4.115 25 H 0.274 0.726 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.384 0.616 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.352 -12.096 -3.675 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.500 4.500 8 H 0.089 0.911 9 C 0.069 3.931 10 C -0.201 4.201 11 C -0.187 4.187 12 C 0.005 3.995 13 N -0.384 5.384 14 C 0.071 3.929 15 H 0.103 0.897 16 C -0.177 4.177 17 C -0.162 4.162 18 C -0.147 4.147 19 C -0.094 4.094 20 C -0.167 4.167 21 C -0.174 4.174 22 C -0.165 4.165 23 C -0.191 4.191 24 C -0.135 4.135 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.219 0.781 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.651 -11.822 -3.751 14.573 hybrid contribution 0.435 0.509 0.206 0.701 sum -7.216 -11.313 -3.545 13.879 Atomic orbital electron populations 1.69820 1.07191 1.28346 1.39177 1.25757 0.94734 1.00704 0.92927 0.86378 0.80336 0.81302 0.78961 1.19662 1.20612 1.18959 1.19356 0.95893 0.90750 1.44018 0.91117 1.17492 0.92717 0.92067 0.90865 1.20587 1.02062 0.93106 1.04374 1.19797 0.97600 0.97143 1.04142 1.17384 0.94766 0.85747 1.01627 1.44087 1.29736 1.06892 1.57657 1.20945 0.85389 0.98062 0.88501 0.89667 1.22948 0.97735 0.99583 0.97483 1.22470 0.98107 0.98719 0.96895 1.22255 1.00576 0.97404 0.94433 1.22239 0.96508 0.96455 0.94206 1.22791 1.00951 0.97468 0.95444 1.22800 0.98691 0.99639 0.96221 1.22906 0.95964 1.00774 0.96882 1.20140 1.01348 0.92397 1.05241 1.20962 0.97645 0.96048 0.98866 0.91487 0.89142 0.89724 0.78120 0.91715 0.91410 0.91692 0.92058 0.91750 0.91964 0.90797 0.90910 0.92291 0.89486 0.90584 0.91525 0.89331 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.01 10.90 55.54 0.61 -21.40 16 2 C 0.07 1.90 5.22 -17.34 -0.09 1.81 16 3 Si 0.90 19.59 29.58 -169.99 -5.03 14.56 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.47 -12.87 9.04 -37.87 -0.34 -13.22 16 8 H 0.07 1.88 7.87 -52.49 -0.41 1.47 16 9 C 0.07 1.94 5.55 -106.79 -0.59 1.35 16 10 C -0.18 -4.51 9.74 -39.26 -0.38 -4.89 16 11 C -0.16 -3.68 9.82 -39.77 -0.39 -4.07 16 12 C 0.10 2.17 6.67 -83.69 -0.56 1.62 16 13 N -0.75 -12.65 4.39 -51.20 -0.22 -12.88 16 14 C 0.18 2.64 2.85 -67.07 -0.19 2.45 16 15 H 0.09 1.43 5.34 -51.93 -0.28 1.15 16 16 C -0.14 -1.86 6.55 -24.93 -0.16 -2.02 16 17 C -0.12 -1.35 6.91 -24.61 -0.17 -1.52 16 18 C -0.11 -1.16 6.20 -25.35 -0.16 -1.32 16 19 C -0.09 -1.14 1.12 -154.11 -0.17 -1.32 16 20 C -0.13 -1.57 6.97 -26.25 -0.18 -1.75 16 21 C -0.14 -1.79 7.92 -25.78 -0.20 -1.99 16 22 C -0.13 -1.54 7.28 -26.24 -0.19 -1.73 16 23 C -0.17 -3.94 9.17 -39.77 -0.36 -4.30 16 24 C -0.12 -3.03 8.60 -39.26 -0.34 -3.37 16 25 H 0.27 6.80 8.30 -40.82 -0.34 6.46 16 26 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 27 H 0.08 1.68 8.06 -52.49 -0.42 1.25 16 28 H 0.38 5.96 6.74 -40.82 -0.28 5.69 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 34 H 0.06 0.60 7.80 -51.93 -0.41 0.19 16 35 H 0.07 0.97 5.68 -51.93 -0.30 0.68 16 36 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 0.79 7.94 -51.93 -0.41 0.38 16 40 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 41 H 0.09 1.89 5.93 -52.48 -0.31 1.58 16 42 H 0.12 3.23 6.26 -52.48 -0.33 2.90 16 LS Contribution 326.65 15.07 4.92 4.92 Total: -1.00 -27.38 326.65 -10.70 -38.08 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.48 Total: 10.99 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: -4.49 Total: -34.27 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.38 Total: -34.28 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.38 -10.70 -38.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394808775.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.216 kcal (2) G-P(sol) polarization free energy of solvation -27.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds