Wall clock time and date at job start Mon Mar 30 2020 01:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86797 * 120.00008 * 2 1 4 4 H 1.48499 * 109.46991 * 270.00179 * 3 2 1 5 5 H 1.48499 * 109.47007 * 30.00051 * 3 2 1 6 6 H 1.48497 * 109.47069 * 150.00282 * 3 2 1 7 7 C 1.39864 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00053 * 192.06191 * 7 2 1 9 9 C 1.41141 * 120.00164 * 12.06160 * 7 2 1 10 10 C 1.40888 * 120.15852 * 208.72335 * 9 7 2 11 11 C 1.36336 * 119.83740 * 180.02562 * 10 9 7 12 12 C 1.39568 * 120.16231 * 0.02562 * 11 10 9 13 13 N 1.38852 * 119.84351 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00251 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.07026 * 339.34402 * 14 13 12 16 16 C 1.54469 * 110.09497 * 100.95231 * 14 13 12 17 17 C 1.54949 * 104.23176 * 142.71670 * 16 14 13 18 18 C 1.55063 * 102.85767 * 322.45158 * 17 16 14 19 19 C 1.53173 * 110.09307 * 217.80455 * 14 13 12 20 20 C 1.53010 * 115.37585 * 10.46841 * 19 14 13 21 21 C 1.53911 * 86.85508 * 92.14656 * 20 19 14 22 22 C 1.53024 * 115.34302 * 110.78157 * 19 14 13 23 23 C 1.39565 * 120.31515 * 0.25439 * 12 11 10 24 24 C 1.36343 * 120.15998 * 359.47752 * 23 12 11 25 25 H 0.96991 * 120.00158 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.07842 * 0.03827 * 10 9 7 27 27 H 1.07999 * 119.91858 * 179.97438 * 11 10 9 28 28 H 0.97005 * 120.00337 * 359.97438 * 13 12 11 29 29 H 1.08997 * 110.47727 * 261.40935 * 16 14 13 30 30 H 1.08999 * 110.47613 * 24.02794 * 16 14 13 31 31 H 1.09000 * 110.73669 * 80.79157 * 17 16 14 32 32 H 1.08997 * 110.73508 * 204.11025 * 17 16 14 33 33 H 1.09005 * 110.52689 * 278.68245 * 18 17 16 34 34 H 1.09000 * 110.52963 * 155.92912 * 18 17 16 35 35 H 1.09002 * 113.65178 * 337.65297 * 20 19 14 36 36 H 1.09004 * 113.65029 * 206.63486 * 20 19 14 37 37 H 1.09004 * 113.59175 * 139.44856 * 21 20 19 38 38 H 1.09003 * 113.59408 * 270.28150 * 21 20 19 39 39 H 1.08997 * 113.65540 * 153.33050 * 22 19 14 40 40 H 1.09001 * 113.73309 * 22.31812 * 22 19 14 41 41 H 1.08003 * 119.91941 * 179.72294 * 23 12 11 42 42 H 1.08003 * 120.08167 * 180.27397 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6526 0.7000 6 1 3.5406 1.4401 0.7000 7 6 2.0084 -1.2113 -0.0005 8 1 3.0705 -1.2217 0.1949 9 6 1.3261 -2.4200 -0.2565 10 6 1.7929 -3.6276 0.2990 11 6 1.1291 -4.7915 0.0470 12 6 -0.0100 -4.7887 -0.7594 13 7 -0.6807 -5.9779 -1.0121 14 6 -1.8771 -5.9789 -1.8576 15 1 -2.3060 -4.9778 -1.8999 16 6 -1.5214 -6.4658 -3.2798 17 6 -2.7492 -7.3060 -3.7129 18 6 -3.1574 -8.0227 -2.3999 19 6 -2.9080 -6.9704 -1.3096 20 6 -2.6019 -7.5338 0.0797 21 6 -3.4422 -6.3735 0.6424 22 6 -4.1694 -6.3414 -0.7138 23 6 -0.4749 -3.5971 -1.3178 24 6 0.1758 -2.4248 -1.0699 25 1 -0.4850 0.8400 0.0004 26 1 2.6743 -3.6313 0.9230 27 1 1.4860 -5.7181 0.4719 28 1 -0.3571 -6.8082 -0.6288 29 1 -1.3842 -5.6173 -3.9501 30 1 -0.6244 -7.0845 -3.2578 31 1 -3.5533 -6.6605 -4.0663 32 1 -2.4704 -8.0309 -4.4777 33 1 -2.5330 -8.9006 -2.2336 34 1 -4.2107 -8.3015 -2.4281 35 1 -1.5473 -7.4813 0.3502 36 1 -3.0380 -8.5165 0.2589 37 1 -4.0838 -6.6631 1.4746 38 1 -2.8618 -5.4739 0.8475 39 1 -5.0438 -6.9907 -0.7566 40 1 -4.3713 -5.3341 -1.0780 41 1 -1.3544 -3.6029 -1.9445 42 1 -0.1876 -1.5027 -1.4991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394808775.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:42 Heat of formation + Delta-G solvation = 25.007248 kcal Electronic energy + Delta-G solvation = -20848.844412 eV Core-core repulsion = 17985.911091 eV Total energy + Delta-G solvation = -2862.933321 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47663 -39.43050 -36.48012 -35.59156 -34.20497 -31.37963 -30.63306 -28.57037 -27.51568 -26.76529 -25.60533 -23.28082 -22.50744 -21.82173 -21.42492 -19.14947 -18.99923 -17.97533 -16.95443 -16.84379 -16.22452 -15.96856 -15.61634 -15.09337 -14.59555 -14.31538 -14.26571 -13.84383 -13.83231 -13.63020 -13.43648 -13.07707 -13.02391 -12.76446 -12.53534 -12.32266 -12.28298 -11.95429 -11.87729 -11.54497 -11.53367 -11.30535 -11.15853 -11.05174 -10.87754 -10.81513 -10.23746 -9.40073 -8.48642 -8.09096 -6.02425 1.11240 1.19590 1.39453 1.52010 1.58471 2.28290 2.85960 2.89028 3.53132 3.65509 3.71506 3.85254 4.02394 4.10052 4.29620 4.34480 4.39305 4.48431 4.57336 4.65747 4.79280 4.84739 4.88304 4.94366 5.02592 5.02952 5.07167 5.09233 5.17029 5.23508 5.24472 5.28786 5.32919 5.45365 5.47113 5.54899 5.65265 5.72081 5.83448 5.97698 6.20018 6.40781 6.69904 6.90402 7.10246 7.16784 7.33732 8.53299 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029572 B = 0.004261 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.606713 B = 6569.382267 C = 6589.867336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.029 3.971 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.030 3.970 10 C -0.188 4.188 11 C -0.172 4.172 12 C 0.127 3.873 13 N -0.736 5.736 14 C 0.171 3.829 15 H 0.061 0.939 16 C -0.137 4.137 17 C -0.117 4.117 18 C -0.102 4.102 19 C -0.090 4.090 20 C -0.122 4.122 21 C -0.144 4.144 22 C -0.123 4.123 23 C -0.180 4.180 24 C -0.133 4.133 25 H 0.280 0.720 26 H 0.096 0.904 27 H 0.116 0.884 28 H 0.396 0.604 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.101 0.899 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.314 -14.491 -4.083 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.182 4.182 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.538 4.538 8 H 0.084 0.916 9 C 0.028 3.972 10 C -0.208 4.208 11 C -0.194 4.194 12 C 0.027 3.973 13 N -0.370 5.370 14 C 0.064 3.936 15 H 0.079 0.921 16 C -0.177 4.177 17 C -0.155 4.155 18 C -0.139 4.139 19 C -0.091 4.091 20 C -0.159 4.159 21 C -0.181 4.181 22 C -0.160 4.160 23 C -0.202 4.202 24 C -0.153 4.153 25 H 0.090 0.910 26 H 0.114 0.886 27 H 0.134 0.866 28 H 0.233 0.767 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.634 -14.271 -4.169 17.193 hybrid contribution 0.650 1.072 0.324 1.295 sum -7.983 -13.199 -3.844 15.898 Atomic orbital electron populations 1.69903 1.08624 1.29453 1.40135 1.26585 0.95548 1.03983 0.92054 0.85267 0.78921 0.76620 0.79194 1.18980 1.19621 1.18509 1.19584 0.95914 0.92107 1.46240 0.91578 1.17800 0.93866 0.93137 0.92428 1.20791 1.02425 0.93395 1.04223 1.20084 0.97581 0.97604 1.04163 1.17454 0.93917 0.86682 0.99230 1.44118 1.29818 1.05752 1.57354 1.21124 0.85103 0.97951 0.89405 0.92138 1.22887 0.99163 0.99586 0.96022 1.22452 0.96688 0.98664 0.97698 1.22245 1.02054 0.96771 0.92852 1.22144 0.95600 0.96282 0.95104 1.22807 1.00234 0.98183 0.94718 1.22753 0.99130 0.98678 0.97566 1.22945 0.96719 1.00650 0.95726 1.20260 1.01749 0.92339 1.05875 1.20867 0.98375 0.96322 0.99774 0.91021 0.88595 0.86562 0.76747 0.93028 0.91587 0.91328 0.90323 0.90726 0.90002 0.91885 0.88304 0.90911 0.93246 0.87916 0.92944 0.88066 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.88 10.90 21.82 0.24 -47.65 16 2 C 0.03 1.55 5.22 85.22 0.45 1.99 16 3 Si 0.98 41.27 29.58 68.60 2.03 43.30 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.51 -29.14 9.04 23.38 0.21 -28.93 16 8 H 0.07 3.69 7.87 -2.91 -0.02 3.67 16 9 C 0.03 1.73 5.55 -21.27 -0.12 1.61 16 10 C -0.19 -9.58 9.74 22.47 0.22 -9.37 16 11 C -0.17 -7.61 9.82 22.15 0.22 -7.40 16 12 C 0.13 5.41 6.67 38.67 0.26 5.66 16 13 N -0.74 -23.95 4.39 -315.91 -1.39 -25.33 16 14 C 0.17 4.85 2.85 45.55 0.13 4.98 16 15 H 0.06 2.04 5.34 -2.39 -0.01 2.03 16 16 C -0.14 -3.45 6.55 31.76 0.21 -3.24 16 17 C -0.12 -2.17 6.91 31.97 0.22 -1.95 16 18 C -0.10 -1.73 6.20 31.49 0.20 -1.53 16 19 C -0.09 -1.98 1.12 -51.92 -0.06 -2.04 16 20 C -0.12 -2.61 6.97 30.90 0.22 -2.39 16 21 C -0.14 -3.55 7.92 31.21 0.25 -3.31 16 22 C -0.12 -2.69 7.28 30.91 0.22 -2.46 16 23 C -0.18 -8.62 9.17 22.15 0.20 -8.42 16 24 C -0.13 -7.36 8.60 22.48 0.19 -7.17 16 25 H 0.28 14.37 8.30 -92.71 -0.77 13.60 16 26 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 27 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 28 H 0.40 11.38 6.74 -92.70 -0.63 10.75 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.69 8.05 -2.39 -0.02 1.67 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.17 8.11 -2.38 -0.02 1.15 16 34 H 0.08 1.14 7.80 -2.39 -0.02 1.12 16 35 H 0.06 1.49 5.68 -2.39 -0.01 1.48 16 36 H 0.10 1.66 8.13 -2.38 -0.02 1.64 16 37 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.10 1.74 7.94 -2.39 -0.02 1.72 16 40 H 0.05 1.29 7.87 -2.39 -0.02 1.28 16 41 H 0.10 4.48 5.93 -2.91 -0.02 4.47 16 42 H 0.10 5.64 6.26 -2.91 -0.02 5.62 16 Total: -1.00 -62.13 326.65 4.28 -57.85 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.38 Total: 35.78 kcal Atomic # 6 Polarization: -66.96 SS G_CDS: 3.01 Total: -63.95 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -1.15 Total: -72.98 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -62.13 4.28 -57.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394808775.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.859 kcal (2) G-P(sol) polarization free energy of solvation -62.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds