Wall clock time and date at job start Mon Mar 30 2020 01:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00073 * 2 1 4 4 H 1.48501 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47003 * 299.99940 * 3 2 1 6 6 H 1.48504 * 109.47053 * 60.00159 * 3 2 1 7 7 C 1.37880 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99649 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00240 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.53251 * 59.90337 * 9 7 2 11 11 C 1.53117 * 109.50228 * 299.80664 * 9 7 2 12 12 C 1.53119 * 109.16144 * 182.40078 * 11 9 7 13 13 C 1.53045 * 109.27655 * 57.65480 * 12 11 9 14 14 N 1.46852 * 109.52058 * 300.82226 * 13 12 11 15 15 C 1.46898 * 110.99623 * 185.84200 * 14 13 12 16 16 C 1.50697 * 109.47330 * 45.78868 * 15 14 13 17 17 C 1.32570 * 119.99793 * 126.82879 * 16 15 14 18 18 C 1.47811 * 119.99984 * 8.53489 * 17 16 15 19 19 C 1.39529 * 120.14517 * 38.03327 * 18 17 16 20 20 C 1.37979 * 119.85482 * 180.25691 * 19 18 17 21 21 C 1.38340 * 120.14016 * 359.42312 * 20 19 18 22 22 C 1.38335 * 120.28821 * 0.60103 * 21 20 19 23 23 C 1.37975 * 120.14260 * 359.67948 * 22 21 20 24 24 C 1.46843 * 111.19934 * 61.74087 * 14 13 12 25 25 H 0.97004 * 119.99976 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.52636 * 302.30763 * 11 9 7 27 27 H 1.09005 * 109.52416 * 62.43473 * 11 9 7 28 28 H 1.08999 * 109.50930 * 177.59240 * 12 11 9 29 29 H 1.08998 * 109.50470 * 297.67389 * 12 11 9 30 30 H 1.08998 * 109.45932 * 180.80958 * 13 12 11 31 31 H 1.08990 * 109.46328 * 60.83551 * 13 12 11 32 32 H 1.09001 * 109.46934 * 285.78250 * 15 14 13 33 33 H 1.09001 * 109.46577 * 165.79030 * 15 14 13 34 34 H 1.08000 * 120.00100 * 306.82757 * 16 15 14 35 35 H 1.08000 * 119.99648 * 188.52901 * 17 16 15 36 36 H 1.08001 * 120.07157 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.92194 * 179.70042 * 20 19 18 38 38 H 1.08010 * 119.85147 * 180.32449 * 21 20 19 39 39 H 1.07999 * 119.92935 * 179.70220 * 22 21 20 40 40 H 1.07998 * 120.07387 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.46245 * 58.27403 * 24 14 13 42 42 H 1.09003 * 109.46373 * 178.24139 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6223 -2.5571 -0.8891 11 6 0.3746 -2.5835 1.2522 12 6 -0.3411 -3.9369 1.2747 13 6 0.6989 -5.0591 1.2372 14 7 1.5111 -4.9348 0.0201 15 6 2.4281 -6.0740 -0.1194 16 6 1.6822 -7.3552 0.1508 17 6 1.7160 -8.3412 -0.7347 18 6 2.6308 -8.2632 -1.8931 19 6 3.9067 -7.7187 -1.7429 20 6 4.7538 -7.6440 -2.8295 21 6 4.3449 -8.1183 -4.0630 22 6 3.0810 -8.6588 -4.2187 23 6 2.2222 -8.7341 -3.1414 24 6 2.2448 -3.6630 -0.0012 25 1 -0.4850 0.8401 0.0004 26 1 0.9986 -2.4866 2.1406 27 1 -0.3627 -1.7808 1.2356 28 1 -0.9336 -4.0203 2.1859 29 1 -0.9954 -4.0171 0.4067 30 1 0.1921 -6.0241 1.2386 31 1 1.3435 -4.9862 2.1130 32 1 3.2455 -5.9719 0.5944 33 1 2.8305 -6.0944 -1.1322 34 1 1.1202 -7.4702 1.0659 35 1 1.0752 -9.2015 -0.6096 36 1 4.2288 -7.3524 -0.7793 37 1 5.7398 -7.2183 -2.7156 38 1 5.0137 -8.0622 -4.9093 39 1 2.7660 -9.0230 -5.1854 40 1 1.2359 -9.1567 -3.2641 41 1 2.8822 -3.5966 0.8805 42 1 2.8608 -3.6140 -0.8991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397561492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:23 Heat of formation + Delta-G solvation = 41.699550 kcal Electronic energy + Delta-G solvation = -20365.738598 eV Core-core repulsion = 17503.529109 eV Total energy + Delta-G solvation = -2862.209489 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.48333 -38.18588 -35.18415 -33.18751 -31.55479 -30.93970 -30.04614 -29.18493 -25.92124 -24.95935 -22.88234 -22.53623 -21.65343 -21.22677 -18.91593 -18.55178 -16.69604 -16.19498 -15.73718 -15.31734 -14.93756 -14.57567 -14.40002 -13.96332 -13.51705 -13.21966 -13.17003 -12.99696 -12.55742 -12.47175 -12.18979 -11.72756 -11.55986 -11.38881 -11.05926 -10.94544 -10.82294 -10.61175 -10.46886 -10.04425 -9.82988 -9.76012 -9.42264 -9.00937 -8.88665 -8.65820 -8.28899 -8.22685 -7.56254 -5.94899 -4.00890 1.04869 1.39797 2.39995 3.31440 3.39409 3.43138 3.83971 4.43729 4.69571 4.76441 4.87341 4.94231 5.06257 5.11569 5.35247 5.42160 5.45307 5.54738 5.64154 5.77193 5.88784 5.91737 5.96271 6.05851 6.12185 6.29364 6.35367 6.42492 6.45519 6.50641 6.54796 6.61760 6.74225 6.78384 6.85176 6.99995 7.00712 7.25481 7.43353 7.71028 7.78365 7.86231 8.12126 8.20610 8.51273 9.03390 9.63266 11.11198 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.004224 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.394078 B = 6626.871382 C = 7465.920952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.056 3.944 14 N -0.532 5.532 15 C 0.066 3.934 16 C -0.124 4.124 17 C -0.133 4.133 18 C -0.047 4.047 19 C -0.110 4.110 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.111 4.111 24 C 0.068 3.932 25 H 0.259 0.741 26 H 0.029 0.971 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.021 0.979 32 H 0.035 0.965 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.018 0.982 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.755 -17.394 -2.688 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.156 4.156 13 C -0.071 4.071 14 N -0.257 5.257 15 C -0.061 4.061 16 C -0.142 4.142 17 C -0.152 4.152 18 C -0.047 4.047 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.129 4.129 24 C -0.059 4.059 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.037 0.963 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.297 -17.254 -3.087 18.047 hybrid contribution 0.942 0.960 0.750 1.540 sum 5.240 -16.294 -2.337 17.274 Atomic orbital electron populations 1.69907 1.05838 1.26160 1.50812 1.24933 0.94817 0.98927 0.95165 0.86580 0.80134 0.84000 0.77527 1.19870 1.21035 1.21114 1.21191 0.92847 0.90679 1.50513 0.92823 1.18664 0.92639 0.90250 0.94865 0.94767 1.21647 1.00009 0.94752 0.98429 1.21680 0.97235 0.96535 1.00108 1.22144 0.95803 0.98908 0.90287 1.62216 1.23869 1.01896 1.37671 1.21693 0.93856 0.88852 1.01686 1.23425 0.98685 0.94080 0.98025 1.21561 0.99508 0.99957 0.94169 1.19071 0.93855 0.98098 0.93667 1.21441 0.93401 0.98640 0.99326 1.21092 0.99761 0.99999 0.93042 1.21166 0.96487 0.99197 0.97382 1.21059 0.94194 1.00131 0.98631 1.21249 0.99417 0.99982 0.92231 1.22324 0.96435 0.88464 0.98684 0.93145 0.95233 0.89150 0.93628 0.92125 0.91952 0.96047 0.94720 0.89162 0.86401 0.86255 0.85671 0.86054 0.86327 0.86220 0.86053 0.96344 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 11.36 55.43 0.63 -24.98 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.27 8.56 -34.44 -0.29 -14.57 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.40 2.26 -91.69 -0.21 1.19 16 10 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.66 5.03 -26.61 -0.13 -2.79 16 12 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 13 C 0.06 1.01 5.00 -3.83 -0.02 0.99 16 14 N -0.53 -10.18 4.80 -236.12 -1.13 -11.31 16 15 C 0.07 1.04 4.04 -4.98 -0.02 1.02 16 16 C -0.12 -1.65 8.55 -36.22 -0.31 -1.96 16 17 C -0.13 -1.61 9.79 -37.57 -0.37 -1.98 16 18 C -0.05 -0.59 5.14 -105.02 -0.54 -1.13 16 19 C -0.11 -1.36 7.32 -39.20 -0.29 -1.65 16 20 C -0.12 -1.37 10.03 -39.64 -0.40 -1.77 16 21 C -0.12 -1.33 10.04 -39.51 -0.40 -1.72 16 22 C -0.12 -1.31 10.03 -39.64 -0.40 -1.71 16 23 C -0.11 -1.29 9.79 -39.19 -0.38 -1.67 16 24 C 0.07 1.48 4.65 -3.84 -0.02 1.47 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 0.97 5.75 -51.93 -0.30 0.67 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.53 7.94 -51.93 -0.41 0.12 16 33 H 0.09 1.45 4.83 -51.93 -0.25 1.20 16 34 H 0.12 1.43 6.39 -52.49 -0.34 1.10 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 1.48 6.36 -52.49 -0.33 1.15 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 1.28 8.12 -51.93 -0.42 0.85 16 LS Contribution 329.40 15.07 4.96 4.96 Total: -1.00 -29.38 329.40 -11.16 -40.54 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.57 Total: 1.53 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -4.03 Total: -27.14 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.50 Total: -36.29 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.38 -11.16 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397561492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.238 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds