Wall clock time and date at job start Mon Mar 30 2020 01:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00387 * 2 1 4 4 H 1.48498 * 109.47131 * 270.00627 * 3 2 1 5 5 H 1.48504 * 109.46500 * 30.00678 * 3 2 1 6 6 H 1.48494 * 109.47320 * 150.00039 * 3 2 1 7 7 C 1.37877 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00359 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00107 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.53466 * 299.90291 * 9 7 2 11 11 C 1.53120 * 109.50080 * 60.00519 * 9 7 2 12 12 C 1.53120 * 109.15972 * 177.59961 * 11 9 7 13 13 C 1.53036 * 109.27700 * 302.34018 * 12 11 9 14 14 N 1.46850 * 109.52384 * 59.18090 * 13 12 11 15 15 C 1.46895 * 111.00333 * 174.16360 * 14 13 12 16 16 C 1.50699 * 109.47542 * 66.04416 * 15 14 13 17 17 C 1.32567 * 119.99896 * 125.00042 * 16 15 14 18 18 C 1.47821 * 119.99624 * 180.02562 * 17 16 15 19 19 C 1.39532 * 120.14075 * 359.72412 * 18 17 16 20 20 C 1.37971 * 119.85101 * 179.67249 * 19 18 17 21 21 C 1.38343 * 120.14262 * 0.62707 * 20 19 18 22 22 C 1.38343 * 120.28767 * 359.67094 * 21 20 19 23 23 C 1.37973 * 120.14140 * 0.02562 * 22 21 20 24 24 C 1.46850 * 111.19713 * 298.26187 * 14 13 12 25 25 H 0.96993 * 120.00001 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.52935 * 57.68920 * 11 9 7 27 27 H 1.08999 * 109.57447 * 297.52800 * 11 9 7 28 28 H 1.08998 * 109.50426 * 182.40375 * 12 11 9 29 29 H 1.08992 * 109.50741 * 62.28338 * 12 11 9 30 30 H 1.08995 * 109.46942 * 179.19622 * 13 12 11 31 31 H 1.08998 * 109.46530 * 299.16948 * 13 12 11 32 32 H 1.09000 * 109.47569 * 186.05061 * 15 14 13 33 33 H 1.09007 * 109.46752 * 306.04272 * 15 14 13 34 34 H 1.08003 * 119.99892 * 305.00763 * 16 15 14 35 35 H 1.07998 * 120.00288 * 359.97438 * 17 16 15 36 36 H 1.07999 * 120.07130 * 359.97438 * 19 18 17 37 37 H 1.08006 * 119.92908 * 180.31663 * 20 19 18 38 38 H 1.07999 * 119.85937 * 179.68947 * 21 20 19 39 39 H 1.07994 * 119.93042 * 180.02562 * 22 21 20 40 40 H 1.07992 * 120.07583 * 180.02562 * 23 22 21 41 41 H 1.09007 * 109.46080 * 301.72331 * 24 14 13 42 42 H 1.09001 * 109.45527 * 181.75228 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6525 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6256 -2.5590 0.8902 11 6 0.3701 -2.5808 -1.2503 12 6 -0.3457 -3.9342 -1.2730 13 6 0.6943 -5.0564 -1.2417 14 7 1.5110 -4.9348 -0.0274 15 6 2.4286 -6.0742 0.1063 16 6 3.4396 -6.0388 -1.0107 17 6 4.7356 -6.0478 -0.7322 18 6 5.7272 -6.0125 -1.8278 19 6 5.3024 -5.9756 -3.1564 20 6 6.2331 -5.9360 -4.1742 21 6 7.5849 -5.9459 -3.8802 22 6 8.0126 -5.9887 -2.5652 23 6 7.0921 -6.0223 -1.5380 24 6 2.2448 -3.6629 -0.0061 25 1 -0.4850 0.8400 0.0004 26 1 0.9908 -2.4820 -2.1407 27 1 -0.3679 -1.7789 -1.2299 28 1 -0.9415 -4.0155 -2.1822 29 1 -0.9963 -4.0166 -0.4024 30 1 0.1877 -6.0214 -1.2434 31 1 1.3358 -4.9817 -2.1197 32 1 2.9440 -6.0152 1.0649 33 1 1.8626 -7.0044 0.0548 34 1 3.1082 -6.0061 -2.0381 35 1 5.0670 -6.0800 0.2952 36 1 4.2474 -5.9731 -3.3873 37 1 5.9056 -5.9022 -5.2028 38 1 8.3094 -5.9198 -4.6806 39 1 9.0693 -5.9958 -2.3423 40 1 7.4272 -6.0553 -0.5119 41 1 2.8790 -3.5947 -0.8900 42 1 2.8640 -3.6160 0.8897 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397561493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:25 Heat of formation + Delta-G solvation = 16.322355 kcal Electronic energy + Delta-G solvation = -20330.007741 eV Core-core repulsion = 17466.697814 eV Total energy + Delta-G solvation = -2863.309927 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31033 -39.75262 -36.42261 -34.86291 -33.27433 -31.86964 -31.67469 -30.46543 -27.06167 -26.79865 -24.27819 -23.55738 -23.14027 -22.43230 -20.77409 -19.70556 -18.47074 -17.99899 -16.82378 -16.48582 -16.05136 -15.93987 -15.72035 -15.05001 -15.01190 -14.64981 -14.33979 -14.20252 -14.16854 -13.84117 -13.59728 -13.28881 -12.95355 -12.86625 -12.68896 -12.51539 -12.32082 -12.01727 -11.83237 -11.74083 -11.68446 -11.37732 -11.12670 -10.82381 -10.66438 -10.37635 -9.87567 -9.20443 -8.95648 -8.08176 -6.22123 -0.00840 0.48655 1.39672 1.40182 1.50582 1.57888 2.42268 2.99730 3.18502 3.23214 3.73201 3.85215 4.09113 4.17280 4.21574 4.22793 4.29982 4.34664 4.48704 4.53901 4.58694 4.65752 4.70485 4.81176 4.90076 4.93473 4.99995 5.06409 5.12623 5.14671 5.19437 5.37855 5.39588 5.49917 5.52798 5.59305 5.63216 5.66685 5.86734 5.98613 6.09896 6.13837 6.22317 6.37950 6.46923 6.90269 7.45525 8.96416 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.004804 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.725701 B = 5826.525556 C = 6883.872094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.047 0.953 9 C 0.051 3.949 10 H -0.003 1.003 11 C -0.103 4.103 12 C -0.112 4.112 13 C 0.065 3.935 14 N -0.541 5.541 15 C 0.083 3.917 16 C -0.172 4.172 17 C -0.123 4.123 18 C -0.071 4.071 19 C -0.135 4.135 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.124 4.124 24 C 0.089 3.911 25 H 0.260 0.740 26 H 0.018 0.982 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.027 0.973 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.136 0.864 41 H 0.014 0.986 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.110 -14.893 -5.967 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.065 0.935 9 C 0.032 3.968 10 H 0.015 0.985 11 C -0.141 4.141 12 C -0.150 4.150 13 C -0.063 4.063 14 N -0.264 5.264 15 C -0.044 4.044 16 C -0.192 4.192 17 C -0.142 4.142 18 C -0.071 4.071 19 C -0.153 4.153 20 C -0.146 4.146 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.142 4.142 24 C -0.039 4.039 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.045 0.955 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.154 0.846 41 H 0.032 0.968 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.613 -14.778 -5.543 19.020 hybrid contribution 0.682 1.305 -0.628 1.601 sum 11.295 -13.473 -6.171 18.633 Atomic orbital electron populations 1.70029 1.07094 1.27037 1.51240 1.25687 0.95649 1.02187 0.94789 0.85664 0.78801 0.79646 0.78207 1.20206 1.20638 1.19422 1.21498 0.92791 0.92316 1.50780 0.93472 1.18611 0.93050 0.91416 0.93754 0.98513 1.21445 0.99022 0.96444 0.97199 1.21606 0.97624 0.94833 1.00954 1.22047 0.94854 0.99140 0.90261 1.62248 1.23634 1.02091 1.38404 1.21425 0.92188 0.94416 0.96351 1.24112 0.95522 0.98845 1.00701 1.21822 0.92705 1.01732 0.97917 1.19339 0.94132 1.00321 0.93343 1.21493 1.00137 1.00965 0.92709 1.21381 0.93617 0.99853 0.99734 1.21556 0.95997 0.99713 0.97457 1.21443 1.00635 0.99462 0.92704 1.21549 0.91986 1.00099 1.00560 1.21867 0.95063 0.88854 0.98111 0.93048 0.96266 0.92431 0.91233 0.92995 0.89060 0.95498 0.90071 0.88044 0.87440 0.85480 0.86265 0.84359 0.83659 0.83557 0.84591 0.96757 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.03 11.35 21.45 0.24 -53.78 16 2 C 0.02 0.89 5.30 84.65 0.45 1.34 16 3 Si 0.95 44.66 29.54 68.60 2.03 46.68 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.54 -30.58 8.56 25.60 0.22 -30.36 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.05 2.64 2.26 -11.49 -0.03 2.62 16 10 H 0.00 -0.20 8.14 -2.39 -0.02 -0.21 16 11 C -0.10 -5.05 5.02 30.67 0.15 -4.90 16 12 C -0.11 -4.35 6.09 30.65 0.19 -4.17 16 13 C 0.06 2.14 5.13 86.32 0.44 2.59 16 14 N -0.54 -19.37 4.86 -900.92 -4.38 -23.74 16 15 C 0.08 2.30 5.82 85.56 0.50 2.80 16 16 C -0.17 -4.67 7.08 24.53 0.17 -4.50 16 17 C -0.12 -3.20 9.52 23.66 0.23 -2.98 16 18 C -0.07 -1.85 5.87 -20.12 -0.12 -1.97 16 19 C -0.14 -3.42 9.40 22.52 0.21 -3.21 16 20 C -0.13 -2.75 10.03 22.23 0.22 -2.52 16 21 C -0.13 -2.45 10.04 22.32 0.22 -2.22 16 22 C -0.12 -2.39 10.03 22.23 0.22 -2.17 16 23 C -0.12 -2.78 9.79 22.52 0.22 -2.56 16 24 C 0.09 3.86 4.24 86.32 0.37 4.22 16 25 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 3.19 6.15 -2.39 -0.01 3.18 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.09 2.46 8.06 -2.39 -0.02 2.44 16 31 H 0.03 0.89 6.89 -2.39 -0.02 0.87 16 32 H 0.08 2.16 7.81 -2.39 -0.02 2.14 16 33 H 0.10 2.33 8.06 -2.38 -0.02 2.31 16 34 H 0.11 2.96 5.06 -2.91 -0.01 2.95 16 35 H 0.13 2.98 7.87 -2.91 -0.02 2.96 16 36 H 0.12 2.96 6.17 -2.91 -0.02 2.94 16 37 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 41 H 0.01 0.64 7.26 -2.38 -0.02 0.62 16 42 H 0.05 2.22 8.12 -2.39 -0.02 2.20 16 Total: -1.00 -64.27 333.57 2.54 -61.73 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.98 Total: 17.13 kcal Atomic # 6 Polarization: -51.68 SS G_CDS: 3.67 Total: -48.01 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -4.13 Total: -77.53 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -64.27 2.54 -61.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397561493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.050 kcal (2) G-P(sol) polarization free energy of solvation -64.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds