Wall clock time and date at job start Mon Mar 30 2020 01:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48503 * 109.47375 * 270.00120 * 3 2 1 5 5 H 1.48502 * 109.47429 * 30.00465 * 3 2 1 6 6 H 1.48504 * 109.47180 * 150.00323 * 3 2 1 7 7 C 1.39950 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99864 * 197.84519 * 7 2 1 9 9 C 1.41393 * 120.00034 * 17.84483 * 7 2 1 10 10 C 1.40715 * 120.24345 * 204.38620 * 9 7 2 11 11 C 1.37614 * 119.74801 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24477 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.74779 * 179.97438 * 12 11 10 14 14 N 1.46894 * 109.47395 * 89.99458 * 13 12 11 15 15 C 1.46734 * 111.00083 * 45.09467 * 14 13 12 16 16 C 1.53089 * 109.78197 * 124.48938 * 15 14 13 17 17 C 1.53212 * 109.07984 * 300.43834 * 16 15 14 18 18 C 1.53171 * 108.90514 * 57.78475 * 17 16 15 19 19 C 1.46735 * 110.99609 * 169.99928 * 14 13 12 20 20 C 1.53058 * 109.64170 * 175.61396 * 19 14 13 21 21 C 1.53218 * 109.63981 * 59.89479 * 16 15 14 22 22 C 1.38634 * 120.50282 * 0.24547 * 12 11 10 23 23 C 1.37624 * 120.24675 * 359.45427 * 22 12 11 24 24 H 0.97003 * 119.99987 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.12464 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.87988 * 179.97438 * 11 10 9 27 27 H 1.08998 * 109.46915 * 329.99123 * 13 12 11 28 28 H 1.09000 * 109.46689 * 210.00191 * 13 12 11 29 29 H 1.08998 * 109.41902 * 244.58482 * 15 14 13 30 30 H 1.08996 * 109.41810 * 4.39292 * 15 14 13 31 31 H 1.09000 * 109.65554 * 180.33824 * 16 15 14 32 32 H 1.09000 * 109.56651 * 297.96177 * 17 16 15 33 33 H 1.08997 * 109.66707 * 177.67301 * 17 16 15 34 34 H 1.08999 * 109.52364 * 240.46897 * 18 17 16 35 35 H 1.08994 * 109.52321 * 120.26511 * 18 17 16 36 36 H 1.08994 * 109.41833 * 55.60598 * 19 14 13 37 37 H 1.08996 * 109.52534 * 179.64311 * 20 19 14 38 38 H 1.09000 * 109.52681 * 299.84783 * 20 19 14 39 39 H 1.08996 * 109.56450 * 61.70525 * 21 16 15 40 40 H 1.09002 * 109.56420 * 182.05147 * 21 16 15 41 41 H 1.07998 * 119.87282 * 179.70515 * 22 12 11 42 42 H 1.07999 * 120.12445 * 180.26424 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2861 9 6 1.3520 -2.4069 -0.3763 10 6 1.8257 -3.6499 0.0825 11 6 1.1798 -4.8066 -0.2900 12 6 0.0666 -4.7502 -1.1145 13 6 -0.6318 -6.0239 -1.5159 14 7 -1.6776 -6.3394 -0.5338 15 6 -2.4605 -5.1448 -0.1971 16 6 -3.9468 -5.4115 -0.4488 17 6 -4.1488 -5.7675 -1.9252 18 6 -3.2876 -6.9881 -2.2638 19 6 -2.5325 -7.4331 -1.0091 20 6 -3.5399 -7.8093 0.0801 21 6 -4.4137 -6.5846 0.4192 22 6 -0.4056 -3.5316 -1.5769 23 6 0.2210 -2.3618 -1.2122 24 1 -0.4850 0.8401 0.0004 25 1 2.6935 -3.6961 0.7238 26 1 1.5418 -5.7617 0.0605 27 1 0.0910 -6.8389 -1.5515 28 1 -1.0837 -5.8959 -2.4995 29 1 -2.3096 -4.8969 0.8535 30 1 -2.1322 -4.3100 -0.8163 31 1 -4.5257 -4.5210 -0.2038 32 1 -3.8486 -4.9249 -2.5482 33 1 -5.1982 -5.9996 -2.1063 34 1 -2.5738 -6.7251 -3.0444 35 1 -3.9267 -7.7997 -2.6114 36 1 -1.9147 -8.2992 -1.2460 37 1 -4.1780 -8.6175 -0.2772 38 1 -3.0063 -8.1330 0.9738 39 1 -4.2916 -6.3309 1.4721 40 1 -5.4626 -6.7969 0.2123 41 1 -1.2707 -3.4999 -2.2226 42 1 -0.1511 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398984101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:09 Heat of formation + Delta-G solvation = 10.627611 kcal Electronic energy + Delta-G solvation = -21149.855458 eV Core-core repulsion = 18286.298589 eV Total energy + Delta-G solvation = -2863.556869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.46329 -37.56607 -34.41822 -33.02565 -31.24204 -30.66248 -29.76713 -29.28184 -26.72965 -24.41254 -22.54530 -22.33175 -21.80534 -20.90070 -19.74877 -17.29375 -16.57670 -16.25074 -16.01386 -15.39995 -15.17297 -14.18357 -13.85404 -13.64688 -13.23956 -12.85937 -12.46134 -12.41511 -12.08651 -12.02107 -11.98327 -11.94765 -11.75416 -11.68531 -11.38089 -11.13001 -10.93270 -10.60198 -10.42594 -10.36060 -10.12453 -9.92003 -9.77626 -9.48508 -9.32669 -9.11025 -7.62393 -7.40049 -7.25245 -6.75388 -4.33732 2.74495 3.06524 3.09172 3.10772 3.19052 3.93423 4.37997 4.69537 4.78458 4.85097 4.95948 5.31822 5.39227 5.47514 5.49504 5.54720 5.67239 5.71797 5.82398 5.85363 5.87430 6.03684 6.10715 6.17281 6.22693 6.29168 6.32697 6.37756 6.42300 6.43387 6.47045 6.60931 6.72570 6.95948 7.08794 7.29151 7.39416 7.61957 7.67745 7.69230 7.93303 8.06658 8.15409 8.31851 8.65050 8.91009 8.99153 10.18853 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031309 B = 0.004576 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.109655 B = 6117.571151 C = 6505.014724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.228 4.228 11 C -0.069 4.069 12 C -0.212 4.212 13 C 0.115 3.885 14 N -0.524 5.524 15 C 0.052 3.948 16 C -0.110 4.110 17 C -0.112 4.112 18 C -0.152 4.152 19 C 0.085 3.915 20 C -0.107 4.107 21 C -0.109 4.109 22 C -0.094 4.094 23 C -0.166 4.166 24 H 0.280 0.720 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.577 -9.254 -2.455 12.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.248 4.248 11 C -0.088 4.088 12 C -0.214 4.214 13 C -0.011 4.011 14 N -0.247 5.247 15 C -0.075 4.075 16 C -0.129 4.129 17 C -0.150 4.150 18 C -0.191 4.191 19 C -0.025 4.025 20 C -0.145 4.145 21 C -0.147 4.147 22 C -0.113 4.113 23 C -0.185 4.185 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.546 -9.257 -2.004 12.110 hybrid contribution -0.145 1.111 -0.666 1.303 sum -7.691 -8.146 -2.669 11.517 Atomic orbital electron populations 1.69830 1.07570 1.29120 1.35309 1.25898 0.94699 1.01250 0.92258 0.86337 0.80545 0.80691 0.79293 1.19309 1.20347 1.18621 1.19611 0.98148 0.91334 1.40197 0.90491 1.17610 0.91024 0.92010 0.88352 1.20974 1.03875 0.92920 1.07006 1.20339 0.95214 0.96377 0.96866 1.18902 1.00962 0.92584 1.08924 1.20857 0.92344 0.95900 0.92037 1.62317 1.12829 1.07307 1.42286 1.22348 0.89425 0.93576 1.02183 1.21527 0.98162 0.98224 0.94962 1.21568 0.99236 0.97880 0.96297 1.22202 0.99349 0.98263 0.99320 1.21516 0.93406 0.94837 0.92696 1.21730 0.96752 0.97177 0.98877 1.21757 0.98230 0.95189 0.99539 1.20466 0.98018 0.92935 0.99862 1.21268 0.99488 0.96574 1.01203 0.90944 0.89145 0.89430 0.92000 0.95489 0.91576 0.89994 0.91000 0.92216 0.92375 0.91758 0.92100 0.90634 0.92261 0.91402 0.91967 0.92523 0.89892 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.47 10.95 55.55 0.61 -19.86 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.34 9.05 -37.74 -0.34 -12.68 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.11 3.00 5.57 -106.83 -0.60 2.41 16 10 C -0.23 -5.65 9.80 -38.87 -0.38 -6.03 16 11 C -0.07 -1.57 9.67 -39.66 -0.38 -1.95 16 12 C -0.21 -4.57 4.54 -104.33 -0.47 -5.05 16 13 C 0.11 2.07 5.25 -4.98 -0.03 2.04 16 14 N -0.52 -8.86 4.85 -228.24 -1.11 -9.96 16 15 C 0.05 0.91 5.08 -3.87 -0.02 0.89 16 16 C -0.11 -1.56 3.25 -90.35 -0.29 -1.85 16 17 C -0.11 -1.47 5.75 -26.53 -0.15 -1.62 16 18 C -0.15 -1.95 5.48 -26.62 -0.15 -2.09 16 19 C 0.08 1.17 2.93 -67.75 -0.20 0.97 16 20 C -0.11 -1.32 5.91 -26.06 -0.15 -1.48 16 21 C -0.11 -1.37 5.87 -25.98 -0.15 -1.52 16 22 C -0.09 -2.15 7.61 -39.66 -0.30 -2.45 16 23 C -0.17 -4.27 8.70 -38.87 -0.34 -4.61 16 24 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 25 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 26 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 28 H 0.03 0.47 5.96 -51.93 -0.31 0.16 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.61 3.93 -51.93 -0.20 1.41 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.87 6.34 -51.93 -0.33 0.54 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.00 8.13 -51.93 -0.42 0.57 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.75 7.39 -52.49 -0.39 1.36 16 42 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 LS Contribution 317.90 15.07 4.79 4.79 Total: -1.00 -26.49 317.90 -11.38 -37.88 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.60 Total: 6.69 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: -4.05 Total: -33.20 kcal Atomic # 7 Polarization: -29.32 SS G_CDS: -0.50 Total: -29.82 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.49 -11.38 -37.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398984101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.503 kcal (2) G-P(sol) polarization free energy of solvation -26.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds