Wall clock time and date at job start Mon Mar 30 2020 01:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48503 * 109.47375 * 270.00120 * 3 2 1 5 5 H 1.48502 * 109.47429 * 30.00465 * 3 2 1 6 6 H 1.48504 * 109.47180 * 150.00323 * 3 2 1 7 7 C 1.39950 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99864 * 197.84519 * 7 2 1 9 9 C 1.41393 * 120.00034 * 17.84483 * 7 2 1 10 10 C 1.40715 * 120.24345 * 204.38620 * 9 7 2 11 11 C 1.37614 * 119.74801 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24477 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.74779 * 179.97438 * 12 11 10 14 14 N 1.46894 * 109.47395 * 89.99458 * 13 12 11 15 15 C 1.46734 * 111.00083 * 45.09467 * 14 13 12 16 16 C 1.53089 * 109.78197 * 124.48938 * 15 14 13 17 17 C 1.53212 * 109.07984 * 300.43834 * 16 15 14 18 18 C 1.53171 * 108.90514 * 57.78475 * 17 16 15 19 19 C 1.46735 * 110.99609 * 169.99928 * 14 13 12 20 20 C 1.53058 * 109.64170 * 175.61396 * 19 14 13 21 21 C 1.53218 * 109.63981 * 59.89479 * 16 15 14 22 22 C 1.38634 * 120.50282 * 0.24547 * 12 11 10 23 23 C 1.37624 * 120.24675 * 359.45427 * 22 12 11 24 24 H 0.97003 * 119.99987 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.12464 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.87988 * 179.97438 * 11 10 9 27 27 H 1.08998 * 109.46915 * 329.99123 * 13 12 11 28 28 H 1.09000 * 109.46689 * 210.00191 * 13 12 11 29 29 H 1.08998 * 109.41902 * 244.58482 * 15 14 13 30 30 H 1.08996 * 109.41810 * 4.39292 * 15 14 13 31 31 H 1.09000 * 109.65554 * 180.33824 * 16 15 14 32 32 H 1.09000 * 109.56651 * 297.96177 * 17 16 15 33 33 H 1.08997 * 109.66707 * 177.67301 * 17 16 15 34 34 H 1.08999 * 109.52364 * 240.46897 * 18 17 16 35 35 H 1.08994 * 109.52321 * 120.26511 * 18 17 16 36 36 H 1.08994 * 109.41833 * 55.60598 * 19 14 13 37 37 H 1.08996 * 109.52534 * 179.64311 * 20 19 14 38 38 H 1.09000 * 109.52681 * 299.84783 * 20 19 14 39 39 H 1.08996 * 109.56450 * 61.70525 * 21 16 15 40 40 H 1.09002 * 109.56420 * 182.05147 * 21 16 15 41 41 H 1.07998 * 119.87282 * 179.70515 * 22 12 11 42 42 H 1.07999 * 120.12445 * 180.26424 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2861 9 6 1.3520 -2.4069 -0.3763 10 6 1.8257 -3.6499 0.0825 11 6 1.1798 -4.8066 -0.2900 12 6 0.0666 -4.7502 -1.1145 13 6 -0.6318 -6.0239 -1.5159 14 7 -1.6776 -6.3394 -0.5338 15 6 -2.4605 -5.1448 -0.1971 16 6 -3.9468 -5.4115 -0.4488 17 6 -4.1488 -5.7675 -1.9252 18 6 -3.2876 -6.9881 -2.2638 19 6 -2.5325 -7.4331 -1.0091 20 6 -3.5399 -7.8093 0.0801 21 6 -4.4137 -6.5846 0.4192 22 6 -0.4056 -3.5316 -1.5769 23 6 0.2210 -2.3618 -1.2122 24 1 -0.4850 0.8401 0.0004 25 1 2.6935 -3.6961 0.7238 26 1 1.5418 -5.7617 0.0605 27 1 0.0910 -6.8389 -1.5515 28 1 -1.0837 -5.8959 -2.4995 29 1 -2.3096 -4.8969 0.8535 30 1 -2.1322 -4.3100 -0.8163 31 1 -4.5257 -4.5210 -0.2038 32 1 -3.8486 -4.9249 -2.5482 33 1 -5.1982 -5.9996 -2.1063 34 1 -2.5738 -6.7251 -3.0444 35 1 -3.9267 -7.7997 -2.6114 36 1 -1.9147 -8.2992 -1.2460 37 1 -4.1780 -8.6175 -0.2772 38 1 -3.0063 -8.1330 0.9738 39 1 -4.2916 -6.3309 1.4721 40 1 -5.4626 -6.7969 0.2123 41 1 -1.2707 -3.4999 -2.2226 42 1 -0.1511 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398984101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:09 Heat of formation + Delta-G solvation = -2.129277 kcal Electronic energy + Delta-G solvation = -21150.408638 eV Core-core repulsion = 18286.298589 eV Total energy + Delta-G solvation = -2864.110049 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.67125 -39.37054 -36.09855 -34.62033 -32.48982 -31.67400 -31.43732 -31.16449 -28.39957 -26.02347 -23.92763 -23.44010 -23.01576 -22.73803 -21.50806 -19.22776 -17.71304 -17.46231 -17.27384 -17.04058 -16.53917 -15.86788 -15.57667 -15.30727 -14.50256 -14.39365 -14.03773 -13.86822 -13.63246 -13.39108 -13.34400 -13.08894 -12.94688 -12.91527 -12.81928 -12.75135 -12.64332 -12.26479 -12.02694 -11.80550 -11.44940 -11.24499 -11.15881 -11.00912 -10.91216 -10.82258 -9.31116 -9.23460 -8.87442 -8.63721 -6.33189 0.93723 1.15182 1.36923 1.50137 1.50586 2.20183 2.67661 3.23294 3.71379 3.75321 3.80864 3.88482 4.17010 4.28146 4.32165 4.40901 4.45676 4.49125 4.53735 4.55633 4.61259 4.67462 4.76750 4.83003 4.95586 5.02648 5.09252 5.09743 5.14212 5.16641 5.22710 5.32971 5.37872 5.40721 5.41631 5.46325 5.49336 5.70952 5.96404 6.10407 6.21645 6.34323 6.40141 6.49247 6.70309 6.94729 7.04375 8.32951 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031309 B = 0.004576 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.109655 B = 6117.571151 C = 6505.014724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.073 0.927 9 C 0.081 3.919 10 C -0.245 4.245 11 C -0.074 4.074 12 C -0.199 4.199 13 C 0.121 3.879 14 N -0.533 5.533 15 C 0.055 3.945 16 C -0.109 4.109 17 C -0.110 4.110 18 C -0.148 4.148 19 C 0.079 3.921 20 C -0.104 4.104 21 C -0.107 4.107 22 C -0.090 4.090 23 C -0.190 4.190 24 H 0.287 0.713 25 H 0.093 0.907 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.823 -11.002 -3.102 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.079 3.921 10 C -0.265 4.265 11 C -0.092 4.092 12 C -0.200 4.200 13 C -0.005 4.005 14 N -0.257 5.257 15 C -0.073 4.073 16 C -0.128 4.128 17 C -0.148 4.148 18 C -0.187 4.187 19 C -0.029 4.029 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.109 4.109 23 C -0.209 4.209 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.130 0.870 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.799 -11.030 -2.652 14.357 hybrid contribution 0.175 1.511 -0.461 1.589 sum -8.624 -9.520 -3.113 13.217 Atomic orbital electron populations 1.69886 1.09007 1.30438 1.35850 1.26740 0.95467 1.04448 0.91198 0.85217 0.79088 0.75955 0.79524 1.18652 1.19191 1.18257 1.19844 0.98323 0.92681 1.42420 0.90867 1.17942 0.91917 0.93004 0.89285 1.21164 1.04473 0.93279 1.07546 1.20641 0.95234 0.96693 0.96647 1.19310 1.00103 0.93799 1.06813 1.20793 0.92892 0.94215 0.92649 1.62221 1.13496 1.07645 1.42344 1.22172 0.92135 0.93186 0.99798 1.21499 0.95538 0.99193 0.96559 1.21567 1.00771 0.97691 0.94781 1.22173 0.99367 0.98766 0.98375 1.21699 0.93678 0.93779 0.93751 1.21741 0.96594 0.97708 0.98176 1.21757 0.99632 0.94418 0.98611 1.20636 0.97935 0.92696 0.99615 1.21224 1.00348 0.96912 1.02441 0.90223 0.88832 0.86978 0.90545 0.94545 0.94436 0.92644 0.91318 0.93654 0.90063 0.92600 0.89411 0.89440 0.89403 0.92085 0.92807 0.90151 0.88423 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.25 10.95 21.83 0.24 -44.01 16 2 C 0.04 1.87 5.14 85.26 0.44 2.31 16 3 Si 0.98 39.10 29.59 68.60 2.03 41.13 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.50 -28.02 9.05 23.46 0.21 -27.81 16 8 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.08 4.51 5.57 -21.29 -0.12 4.39 16 10 C -0.25 -12.51 9.80 22.73 0.22 -12.29 16 11 C -0.07 -3.33 9.67 22.22 0.21 -3.11 16 12 C -0.20 -8.53 4.54 -19.67 -0.09 -8.61 16 13 C 0.12 4.14 5.25 85.56 0.45 4.59 16 14 N -0.53 -17.15 4.85 -876.02 -4.25 -21.40 16 15 C 0.05 1.91 5.08 86.36 0.44 2.35 16 16 C -0.11 -2.93 3.25 -10.62 -0.03 -2.96 16 17 C -0.11 -2.60 5.75 30.72 0.18 -2.43 16 18 C -0.15 -3.25 5.48 30.67 0.17 -3.08 16 19 C 0.08 1.93 2.93 44.98 0.13 2.06 16 20 C -0.10 -2.20 5.91 31.03 0.18 -2.02 16 21 C -0.11 -2.38 5.87 31.08 0.18 -2.19 16 22 C -0.09 -4.21 7.61 22.22 0.17 -4.04 16 23 C -0.19 -10.22 8.70 22.73 0.20 -10.03 16 24 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 25 H 0.09 4.57 8.06 -2.91 -0.02 4.54 16 26 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 27 H 0.08 2.42 8.08 -2.39 -0.02 2.40 16 28 H 0.04 1.19 5.96 -2.39 -0.01 1.18 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 2.22 3.93 -2.39 -0.01 2.21 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.33 6.34 -2.39 -0.02 1.32 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.96 8.13 -2.39 -0.02 1.94 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.10 4.19 7.39 -2.91 -0.02 4.17 16 42 H 0.10 5.56 6.16 -2.91 -0.02 5.54 16 Total: -1.00 -59.49 317.90 1.95 -57.54 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.99 Total: 29.62 kcal Atomic # 6 Polarization: -65.82 SS G_CDS: 2.94 Total: -62.87 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -4.01 Total: -65.41 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -59.49 1.95 -57.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398984101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.410 kcal (2) G-P(sol) polarization free energy of solvation -59.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds