Wall clock time and date at job start Mon Mar 30 2020 02:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99876 * 2 1 4 4 N 1.46898 * 109.47181 * 125.00218 * 3 2 1 5 5 C 1.46903 * 110.99978 * 288.70306 * 4 3 2 6 6 C 1.50695 * 109.47112 * 160.84923 * 5 4 3 7 7 H 1.08001 * 120.00280 * 2.12678 * 6 5 4 8 8 C 1.37878 * 119.99858 * 182.12958 * 6 5 4 9 9 N 1.31520 * 119.99964 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00058 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.46950 * 90.00152 * 10 8 6 12 12 H 1.48492 * 109.47206 * 209.99747 * 10 8 6 13 13 H 1.48502 * 109.47071 * 330.00284 * 10 8 6 14 14 C 1.46904 * 111.00055 * 164.75327 * 4 3 2 15 15 C 1.50705 * 109.46935 * 293.95116 * 14 4 3 16 16 C 1.38261 * 119.99862 * 269.73040 * 15 14 4 17 17 C 1.38212 * 119.99835 * 179.79043 * 16 15 14 18 18 C 1.38258 * 119.99771 * 0.45932 * 17 16 15 19 19 C 1.38209 * 120.00027 * 359.76986 * 18 17 16 20 20 C 1.50699 * 119.99996 * 180.02562 * 19 18 17 21 21 C 1.53005 * 117.50097 * 8.63904 * 20 19 18 22 22 C 1.53001 * 60.00057 * 252.51529 * 21 20 19 23 23 C 1.38211 * 120.00007 * 90.00235 * 15 14 4 24 24 H 1.07996 * 119.99612 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99756 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99852 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47742 * 4.99658 * 3 2 1 28 28 H 1.09010 * 109.46988 * 245.00114 * 3 2 1 29 29 H 1.08994 * 109.47126 * 280.85311 * 5 4 3 30 30 H 1.09005 * 109.46599 * 40.85178 * 5 4 3 31 31 H 0.97004 * 119.99927 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.46739 * 173.95251 * 14 4 3 33 33 H 1.08992 * 109.47427 * 53.95100 * 14 4 3 34 34 H 1.08005 * 119.99903 * 359.97438 * 16 15 14 35 35 H 1.07998 * 120.00154 * 180.24682 * 17 16 15 36 36 H 1.08000 * 119.99722 * 179.79061 * 18 17 16 37 37 H 1.08997 * 115.55232 * 154.35098 * 20 19 18 38 38 H 1.09004 * 117.49199 * 0.02562 * 21 20 19 39 39 H 1.08995 * 117.50257 * 145.01994 * 21 20 19 40 40 H 1.09002 * 117.48977 * 252.50743 * 22 21 20 41 41 H 1.08992 * 117.52008 * 107.48481 * 22 21 20 42 42 H 1.07998 * 119.99889 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2746 1.4725 2.4063 6 6 3.1649 1.0337 3.5402 7 1 4.1781 0.7178 3.3401 8 6 2.6859 1.0354 4.8331 9 7 3.4627 0.6520 5.8227 10 14 0.9332 1.5810 5.1790 11 1 0.0263 0.4071 5.1086 12 1 0.8603 2.1820 6.5349 13 1 0.5194 2.5875 4.1685 14 6 3.9911 2.4008 0.9729 15 6 4.8732 2.0915 -0.2093 16 6 6.0342 1.3615 -0.0333 17 6 6.8409 1.0741 -1.1182 18 6 6.4918 1.5248 -2.3778 19 6 5.3337 2.2585 -2.5529 20 6 4.9529 2.7491 -3.9259 21 6 5.7727 2.2367 -5.1118 22 6 5.9327 3.6831 -4.6392 23 6 4.5245 2.5423 -1.4684 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1317 0.0895 28 1 2.6213 1.4026 -0.9315 29 1 1.9908 2.5150 2.5496 30 1 1.3790 0.8515 2.3862 31 1 3.1256 0.6528 6.7322 32 1 4.6012 2.4684 1.8736 33 1 3.4813 3.3498 0.8073 34 1 6.3091 1.0133 0.9514 35 1 7.7457 0.5006 -0.9814 36 1 7.1239 1.3031 -3.2249 37 1 3.8883 2.9195 -4.0858 38 1 6.5872 1.5443 -4.8988 39 1 5.2474 2.0696 -6.0521 40 1 5.5126 4.4675 -5.2688 41 1 6.8525 3.9429 -4.1153 42 1 3.6197 3.1159 -1.6052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421358923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:13 Heat of formation + Delta-G solvation = 59.024106 kcal Electronic energy + Delta-G solvation = -20267.208809 eV Core-core repulsion = 17405.750570 eV Total energy + Delta-G solvation = -2861.458240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81126 -38.89428 -37.39685 -34.95254 -34.25898 -32.32538 -31.61506 -29.70509 -27.50091 -25.45590 -24.45531 -23.40425 -22.87411 -22.21496 -20.69030 -20.33024 -18.96145 -17.82217 -16.93674 -16.76292 -16.27367 -16.23021 -15.74364 -15.27351 -15.16201 -14.93819 -14.67195 -14.37009 -14.10075 -13.65572 -13.40040 -13.07997 -13.01661 -12.85073 -12.56065 -12.38118 -12.27861 -12.02406 -11.88804 -11.83574 -11.69213 -11.53431 -11.44132 -11.16306 -10.78098 -10.26453 -9.65832 -9.36003 -9.02942 -8.27911 -6.30237 0.43623 0.48945 1.33423 1.34198 1.41261 1.45173 2.33785 2.66833 3.05242 3.17679 3.42902 3.65685 3.87356 4.01008 4.04171 4.10413 4.21623 4.22770 4.24387 4.32873 4.41399 4.56724 4.60264 4.67359 4.74515 4.77935 4.84162 4.92393 4.97529 5.04330 5.10106 5.16534 5.17721 5.23796 5.30453 5.54304 5.60649 5.70374 5.74111 5.78262 5.82552 6.05267 6.13965 6.34991 6.64964 6.75405 7.32872 8.88940 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.004515 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.826541 B = 6199.947570 C = 6892.638632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.148 4.148 3 C 0.073 3.927 4 N -0.532 5.532 5 C 0.175 3.825 6 C -0.511 4.511 7 H 0.036 0.964 8 C 0.010 3.990 9 N -0.948 5.948 10 Si 0.943 3.057 11 H -0.265 1.265 12 H -0.281 1.281 13 H -0.253 1.253 14 C 0.102 3.898 15 C -0.074 4.074 16 C -0.124 4.124 17 C -0.117 4.117 18 C -0.127 4.127 19 C -0.054 4.054 20 C -0.132 4.132 21 C -0.168 4.168 22 C -0.164 4.164 23 C -0.117 4.117 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.034 0.966 28 H 0.092 0.908 29 H -0.013 1.013 30 H 0.030 0.970 31 H 0.266 0.734 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.104 0.896 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 4.609 -22.230 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.167 4.167 3 C -0.054 4.054 4 N -0.255 5.255 5 C 0.048 3.952 6 C -0.549 4.549 7 H 0.055 0.945 8 C -0.187 4.187 9 N -0.589 5.589 10 Si 0.766 3.234 11 H -0.190 1.190 12 H -0.206 1.206 13 H -0.177 1.177 14 C -0.025 4.025 15 C -0.074 4.074 16 C -0.143 4.143 17 C -0.135 4.135 18 C -0.145 4.145 19 C -0.054 4.054 20 C -0.150 4.150 21 C -0.205 4.205 22 C -0.201 4.201 23 C -0.136 4.136 24 H 0.119 0.881 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.052 0.948 28 H 0.110 0.890 29 H 0.004 0.996 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.122 0.878 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.134 0.866 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.110 0.890 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.359 4.154 -22.024 22.454 hybrid contribution -0.886 0.673 1.208 1.642 sum 0.473 4.828 -20.817 21.375 Atomic orbital electron populations 1.23955 0.95326 1.02629 1.01031 1.22882 0.96122 0.98292 0.99403 1.21403 0.94166 0.94817 0.94997 1.61819 1.15662 1.46102 1.01953 1.19922 0.93852 0.94054 0.87342 1.21240 0.99553 1.43064 0.91076 0.94521 1.25793 1.02053 0.95085 0.95810 1.70051 1.38586 1.49929 1.00322 0.85780 0.80016 0.79621 0.77958 1.19013 1.20633 1.17654 1.20886 0.93515 0.91975 0.96110 1.19780 0.95190 0.98017 0.94419 1.21116 0.95165 0.98633 0.99339 1.21314 0.99931 0.99856 0.92372 1.21237 0.97197 0.98650 0.97398 1.19292 0.94729 0.97533 0.93827 1.21046 0.98358 1.06243 0.89397 1.23160 1.02586 0.97132 0.97590 1.23079 1.00411 0.93892 1.02752 1.20893 1.00181 1.01152 0.91327 0.88131 0.86955 0.87985 0.94819 0.88953 0.99573 0.95178 0.92480 0.91988 0.94350 0.87773 0.84294 0.83830 0.86617 0.88012 0.87096 0.87176 0.88974 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.40 14.32 67.78 0.97 -4.43 16 2 C -0.15 -4.91 8.72 25.64 0.22 -4.69 16 3 C 0.07 2.53 5.24 85.56 0.45 2.98 16 4 N -0.53 -22.66 4.37 -909.93 -3.98 -26.64 16 5 C 0.18 8.61 3.65 85.55 0.31 8.92 16 6 C -0.51 -30.15 9.12 25.60 0.23 -29.92 16 7 H 0.04 2.42 7.94 -2.91 -0.02 2.39 16 8 C 0.01 0.58 5.47 84.65 0.46 1.04 16 9 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 10 Si 0.94 44.77 27.43 68.60 1.88 46.65 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.25 -11.26 6.60 99.48 0.66 -10.60 16 14 C 0.10 4.04 4.95 85.56 0.42 4.46 16 15 C -0.07 -2.48 4.93 -19.86 -0.10 -2.58 16 16 C -0.12 -4.13 9.70 22.27 0.22 -3.92 16 17 C -0.12 -3.10 10.05 22.27 0.22 -2.88 16 18 C -0.13 -2.93 9.30 22.27 0.21 -2.72 16 19 C -0.05 -1.28 5.61 -19.87 -0.11 -1.40 16 20 C -0.13 -2.38 6.04 -11.54 -0.07 -2.45 16 21 C -0.17 -2.30 9.86 30.60 0.30 -1.99 16 22 C -0.16 -2.37 10.16 30.60 0.31 -2.06 16 23 C -0.12 -3.27 7.54 22.27 0.17 -3.11 16 24 H 0.10 2.61 7.84 -2.91 -0.02 2.59 16 25 H 0.11 2.73 8.06 -2.91 -0.02 2.71 16 26 H 0.10 3.52 8.06 -2.91 -0.02 3.49 16 27 H 0.03 1.11 7.71 -2.39 -0.02 1.09 16 28 H 0.09 2.91 5.17 -2.38 -0.01 2.89 16 29 H -0.01 -0.66 7.21 -2.39 -0.02 -0.67 16 30 H 0.03 1.47 6.41 -2.38 -0.02 1.45 16 31 H 0.27 15.72 8.31 -92.71 -0.77 14.94 16 32 H 0.06 2.82 7.27 -2.39 -0.02 2.80 16 33 H 0.04 1.41 8.06 -2.39 -0.02 1.39 16 34 H 0.10 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 36 H 0.14 2.49 6.02 -2.91 -0.02 2.47 16 37 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.10 1.32 6.18 -2.38 -0.01 1.30 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 40 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.13 3.18 7.74 -2.91 -0.02 3.16 16 Total: -1.00 -67.60 341.91 3.36 -64.24 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.93 Total: 20.25 kcal Atomic # 6 Polarization: -48.96 SS G_CDS: 4.22 Total: -44.74 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -3.68 Total: -86.40 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -67.60 3.36 -64.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421358923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.266 kcal (2) G-P(sol) polarization free energy of solvation -67.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds