Wall clock time and date at job start Mon Mar 30 2020 01:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00438 * 2 1 4 4 H 1.48503 * 109.46755 * 269.99887 * 3 2 1 5 5 H 1.48502 * 109.46887 * 29.99328 * 3 2 1 6 6 H 1.48498 * 109.47472 * 149.99659 * 3 2 1 7 7 C 1.37877 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 175.14139 * 7 2 1 9 9 C 1.50705 * 120.00329 * 355.41631 * 7 2 1 10 10 C 1.52998 * 115.55206 * 274.93418 * 9 7 2 11 11 N 1.46900 * 109.46884 * 296.30337 * 10 9 7 12 12 C 1.46904 * 111.00269 * 174.87541 * 11 10 9 13 13 C 1.50695 * 109.46951 * 179.97438 * 12 11 10 14 14 C 1.38261 * 120.00122 * 269.72314 * 13 12 11 15 15 C 1.38211 * 120.00210 * 179.79280 * 14 13 12 16 16 C 1.38256 * 119.99912 * 0.46588 * 15 14 13 17 17 C 1.38216 * 119.99847 * 359.76574 * 16 15 14 18 18 C 1.50701 * 120.00154 * 180.02562 * 17 16 15 19 19 C 1.53001 * 117.49525 * 8.64375 * 18 17 16 20 20 C 1.52998 * 60.00020 * 252.51333 * 19 18 17 21 21 C 1.38213 * 120.00357 * 90.00450 * 13 12 11 22 22 C 1.53001 * 117.49867 * 129.25595 * 9 7 2 23 23 C 1.53000 * 117.49599 * 60.59476 * 9 7 2 24 24 H 0.96996 * 119.99571 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47266 * 56.29761 * 10 9 7 26 26 H 1.08993 * 109.47285 * 176.30201 * 10 9 7 27 27 H 1.00904 * 110.99520 * 298.82908 * 11 10 9 28 28 H 1.09003 * 109.46785 * 299.99947 * 12 11 10 29 29 H 1.08996 * 109.46637 * 59.99924 * 12 11 10 30 30 H 1.07999 * 119.99866 * 0.02562 * 14 13 12 31 31 H 1.08002 * 120.00072 * 180.25382 * 15 14 13 32 32 H 1.07995 * 120.00152 * 179.79738 * 16 15 14 33 33 H 1.08996 * 115.55493 * 154.34953 * 18 17 16 34 34 H 1.09005 * 117.50409 * 0.02562 * 19 18 17 35 35 H 1.09001 * 117.49923 * 145.02499 * 19 18 17 36 36 H 1.09003 * 117.49798 * 252.50910 * 20 19 18 37 37 H 1.09004 * 117.52124 * 107.48510 * 20 19 18 38 38 H 1.08002 * 119.99738 * 359.97245 * 21 13 12 39 39 H 1.08998 * 117.50117 * 0.02562 * 22 9 7 40 40 H 1.09002 * 117.49567 * 145.02601 * 22 9 7 41 41 H 1.08997 * 117.50075 * 214.98350 * 23 9 7 42 42 H 1.09002 * 117.49945 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1959 -0.0787 9 6 1.2546 -2.4971 0.1054 10 6 0.9187 -2.9527 1.5269 11 7 2.1623 -3.2128 2.2643 12 6 1.8832 -3.5355 3.6700 13 6 3.1797 -3.7961 4.3925 14 6 3.6951 -5.0779 4.4472 15 6 4.8863 -5.3163 5.1062 16 6 5.5578 -4.2746 5.7190 17 6 5.0402 -2.9941 5.6684 18 6 5.7723 -1.8585 6.3359 19 6 7.1752 -2.1430 6.8760 20 6 6.0055 -1.9582 7.8447 21 6 3.8507 -2.7549 5.0056 22 6 1.5729 -3.5804 -0.9270 23 6 0.2451 -2.8219 -0.9975 24 1 -0.4849 0.8401 -0.0004 25 1 0.3520 -2.1719 2.0343 26 1 0.3235 -3.8648 1.4850 27 1 2.6969 -3.9468 1.8241 28 1 1.3672 -2.6979 4.1394 29 1 1.2543 -4.4242 3.7208 30 1 3.1686 -5.8923 3.9717 31 1 5.2910 -6.3169 5.1453 32 1 6.4870 -4.4614 6.2367 33 1 5.5840 -0.8687 5.9201 34 1 7.5689 -3.1514 6.7483 35 1 7.9102 -1.3403 6.8155 36 1 5.9709 -1.0340 8.4215 37 1 5.6289 -2.8450 8.3547 38 1 3.4461 -1.7543 4.9664 39 1 2.3249 -3.3509 -1.6819 40 1 1.5427 -4.6178 -0.5936 41 1 -0.6580 -3.3605 -0.7105 42 1 0.1231 -2.0930 -1.7987 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421393536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:42 Heat of formation + Delta-G solvation = 69.879675 kcal Electronic energy + Delta-G solvation = -19958.344973 eV Core-core repulsion = 17097.357467 eV Total energy + Delta-G solvation = -2860.987507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.66632 -37.29627 -36.65142 -34.34939 -31.78451 -30.88809 -30.51687 -26.36308 -25.20027 -23.79439 -23.00892 -22.50659 -21.75498 -20.93838 -19.54396 -18.88522 -16.91521 -16.18275 -15.81238 -15.15734 -14.67683 -14.48320 -14.36276 -13.97675 -13.79952 -13.40908 -13.21332 -12.68077 -12.49162 -12.20361 -11.89682 -11.54681 -11.51410 -11.21874 -10.99947 -10.84833 -10.81595 -10.63704 -10.62431 -10.42357 -10.35217 -10.09407 -9.33125 -8.87744 -8.61900 -8.41900 -8.28290 -7.97431 -7.51560 -5.89876 -3.91653 1.44064 1.56109 3.37158 3.43847 3.49961 3.59169 4.07388 4.48087 4.52436 4.76200 4.88292 4.91020 5.00675 5.14538 5.19330 5.27751 5.40028 5.47436 5.51652 5.58087 5.60163 5.68429 5.87133 5.93794 5.97526 5.98737 6.19518 6.23638 6.26730 6.36291 6.52817 6.58886 6.64014 6.72270 6.79689 6.87440 6.92473 7.15691 7.19871 7.55811 7.60143 7.96657 8.02722 8.17833 8.61338 9.07364 9.71183 11.19381 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016968 B = 0.004658 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.755200 B = 6010.269157 C = 7192.501773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.465 4.465 8 H 0.058 0.942 9 C 0.049 3.951 10 C 0.107 3.893 11 N -0.662 5.662 12 C 0.096 3.904 13 C -0.065 4.065 14 C -0.121 4.121 15 C -0.120 4.120 16 C -0.128 4.128 17 C -0.055 4.055 18 C -0.114 4.114 19 C -0.178 4.178 20 C -0.171 4.171 21 C -0.088 4.088 22 C -0.217 4.217 23 C -0.152 4.152 24 H 0.256 0.744 25 H 0.072 0.928 26 H -0.004 1.004 27 H 0.332 0.668 28 H 0.077 0.923 29 H 0.026 0.974 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.730 -7.985 13.150 17.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.503 4.503 8 H 0.076 0.924 9 C 0.048 3.952 10 C -0.021 4.021 11 N -0.292 5.292 12 C -0.033 4.033 13 C -0.065 4.065 14 C -0.139 4.139 15 C -0.138 4.138 16 C -0.147 4.147 17 C -0.055 4.055 18 C -0.132 4.132 19 C -0.215 4.215 20 C -0.208 4.208 21 C -0.106 4.106 22 C -0.254 4.254 23 C -0.190 4.190 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.014 0.986 27 H 0.149 0.851 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.668 -7.175 13.280 17.406 hybrid contribution 0.011 0.022 -0.169 0.171 sum 8.679 -7.154 13.111 17.274 Atomic orbital electron populations 1.70018 1.05762 1.26029 1.50784 1.24929 0.94755 0.98689 0.95134 0.86676 0.80139 0.83806 0.77843 1.21021 1.21447 1.19803 1.20290 0.92522 0.88410 1.49116 0.92385 1.18825 0.97679 0.93050 0.85603 1.21561 0.88480 0.96406 0.95670 1.60319 1.21688 1.47569 0.99585 1.20904 0.92243 0.99346 0.90848 1.19896 0.96937 0.92895 0.96781 1.21032 0.96438 0.96505 0.99968 1.20993 0.95525 0.98641 0.98619 1.20923 0.99992 0.92511 1.01228 1.19085 0.94985 0.93151 0.98294 1.21054 0.98087 0.98471 0.95604 1.23044 0.91202 1.03090 1.04160 1.23004 1.02661 1.03356 0.91795 1.20875 0.94125 0.99184 0.96460 1.22995 1.00616 0.95464 1.06372 1.22494 0.90538 1.01533 1.04475 0.93400 0.90937 0.98618 0.85121 0.90497 0.95573 0.86540 0.86465 0.86517 0.86816 0.88471 0.88573 0.88608 0.88737 0.85743 0.90591 0.92322 0.92344 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 12.65 55.43 0.70 -24.70 16 2 C 0.07 1.84 5.43 -17.82 -0.10 1.74 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.47 -12.82 8.71 -34.44 -0.30 -13.12 16 8 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 9 C 0.05 1.21 1.64 -155.66 -0.25 0.96 16 10 C 0.11 2.39 5.51 -3.83 -0.02 2.37 16 11 N -0.66 -13.06 6.34 -115.06 -0.73 -13.79 16 12 C 0.10 1.58 5.81 -4.98 -0.03 1.55 16 13 C -0.06 -0.98 5.39 -104.62 -0.56 -1.54 16 14 C -0.12 -1.62 9.70 -39.58 -0.38 -2.00 16 15 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 16 C -0.13 -1.56 9.30 -39.58 -0.37 -1.93 16 17 C -0.06 -0.73 5.61 -104.62 -0.59 -1.32 16 18 C -0.11 -1.30 6.04 -91.77 -0.55 -1.86 16 19 C -0.18 -1.66 9.86 -26.73 -0.26 -1.92 16 20 C -0.17 -1.60 10.16 -26.73 -0.27 -1.87 16 21 C -0.09 -1.32 9.39 -39.59 -0.37 -1.69 16 22 C -0.22 -4.79 9.96 -26.69 -0.27 -5.06 16 23 C -0.15 -3.64 9.15 -26.69 -0.24 -3.89 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.07 1.78 8.13 -51.93 -0.42 1.36 16 26 H 0.00 -0.09 8.10 -51.93 -0.42 -0.51 16 27 H 0.33 6.27 8.78 -39.29 -0.34 5.92 16 28 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 29 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.17 6.02 -52.49 -0.32 0.86 16 33 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.10 0.85 6.18 -51.93 -0.32 0.53 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.08 2.18 8.14 -51.93 -0.42 1.76 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -28.92 350.38 -11.60 -40.52 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.86 Total: 7.46 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: -4.97 Total: -31.44 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.03 Total: -38.49 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.92 -11.60 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421393536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.399 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds