Wall clock time and date at job start Mon Mar 30 2020 01:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32569 * 119.99913 * 2 1 4 4 C 1.47812 * 119.99869 * 7.16742 * 3 2 1 5 5 C 1.39533 * 120.13826 * 213.15179 * 4 3 2 6 6 C 1.37978 * 119.85054 * 179.72090 * 5 4 3 7 7 C 1.38347 * 120.14533 * 0.53680 * 6 5 4 8 8 C 1.38340 * 120.28412 * 359.76568 * 7 6 5 9 9 C 1.37976 * 120.14171 * 359.95146 * 8 7 6 10 10 C 1.50699 * 120.00160 * 180.02562 * 2 1 3 11 11 N 1.46904 * 109.47207 * 275.00107 * 10 2 1 12 12 C 1.46896 * 110.99748 * 179.97438 * 11 10 2 13 13 C 1.53002 * 109.46660 * 185.34827 * 12 11 10 14 14 C 1.50692 * 115.55564 * 303.54917 * 13 12 11 15 15 H 1.08006 * 120.00090 * 95.37992 * 14 13 12 16 16 C 1.37875 * 119.99867 * 275.10988 * 14 13 12 17 17 N 1.31512 * 120.00394 * 355.57088 * 16 14 13 18 18 Si 1.86807 * 119.99971 * 175.56990 * 16 14 13 19 19 H 1.48503 * 109.47228 * 59.99952 * 18 16 14 20 20 H 1.48500 * 109.47209 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47079 * 299.99782 * 18 16 14 22 22 C 1.53007 * 117.49624 * 89.21975 * 13 12 11 23 23 C 1.53004 * 117.49825 * 157.87471 * 13 12 11 24 24 H 1.08995 * 109.47505 * 270.30042 * 1 2 3 25 25 H 1.08999 * 109.47110 * 30.30521 * 1 2 3 26 26 H 1.09001 * 109.47121 * 150.29945 * 1 2 3 27 27 H 1.08001 * 119.99766 * 187.16153 * 3 2 1 28 28 H 1.07993 * 120.07337 * 359.97438 * 5 4 3 29 29 H 1.08005 * 119.92822 * 180.27905 * 6 5 4 30 30 H 1.08000 * 119.85799 * 179.73959 * 7 6 5 31 31 H 1.08003 * 119.93139 * 179.97438 * 8 7 6 32 32 H 1.08001 * 120.07227 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.46988 * 155.00042 * 10 2 1 34 34 H 1.09003 * 109.47128 * 35.00329 * 10 2 1 35 35 H 1.00899 * 110.99572 * 303.95242 * 11 10 2 36 36 H 1.08997 * 109.47396 * 65.35343 * 12 11 10 37 37 H 1.08995 * 109.47637 * 305.34762 * 12 11 10 38 38 H 0.97000 * 120.00295 * 185.00404 * 17 16 14 39 39 H 1.08997 * 117.49808 * 214.99723 * 22 13 12 40 40 H 1.09005 * 117.49859 * 0.02562 * 22 13 12 41 41 H 1.09008 * 117.49677 * 359.97438 * 23 13 12 42 42 H 1.08999 * 117.49962 * 144.97105 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1481 0.0000 4 6 1.4394 2.4231 0.1597 5 6 1.8933 3.5758 -0.4823 6 6 1.2036 4.7616 -0.3338 7 6 0.0707 4.8117 0.4586 8 6 -0.3810 3.6739 1.1029 9 6 0.2963 2.4806 0.9579 10 6 2.2605 -1.3051 -0.0006 11 7 2.4008 -1.7901 1.3789 12 6 3.1316 -3.0639 1.4173 13 6 3.1419 -3.6029 2.8492 14 6 3.7158 -2.6753 3.8889 15 1 3.0605 -2.0398 4.4663 16 6 5.0767 -2.6417 4.1069 17 7 5.8655 -3.4800 3.4707 18 14 5.8004 -1.4056 5.3060 19 1 5.2261 -1.6315 6.6567 20 1 7.2749 -1.5732 5.3601 21 1 5.4755 -0.0288 4.8539 22 6 1.9822 -4.5070 3.2720 23 6 3.3721 -5.1038 3.0374 24 1 -0.3634 0.0054 1.0276 25 1 -0.3633 0.8872 -0.5186 26 1 -0.3633 -0.8927 -0.5092 27 1 3.2435 1.1517 -0.1166 28 1 2.7802 3.5390 -1.0975 29 1 1.5514 5.6535 -0.8338 30 1 -0.4632 5.7433 0.5750 31 1 -1.2659 3.7196 1.7204 32 1 -0.0576 1.5929 1.4610 33 1 3.2488 -1.1538 -0.4348 34 1 1.7132 -2.0404 -0.5904 35 1 2.8482 -1.0985 1.9616 36 1 4.1563 -2.9051 1.0815 37 1 2.6418 -3.7837 0.7616 38 1 6.8129 -3.5061 3.6771 39 1 1.6344 -4.4307 4.3022 40 1 1.2121 -4.7180 2.5299 41 1 3.5158 -5.7072 2.1410 42 1 3.9391 -5.4201 3.9129 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430038936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:49 Heat of formation + Delta-G solvation = 60.231577 kcal Electronic energy + Delta-G solvation = -19961.839811 eV Core-core repulsion = 17100.433931 eV Total energy + Delta-G solvation = -2861.405880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.37724 -37.19554 -36.03290 -33.36000 -31.87511 -31.11651 -30.19726 -27.35068 -26.28830 -25.19756 -23.04915 -22.37744 -21.58863 -20.89391 -19.14354 -18.26341 -16.51915 -15.95603 -15.63309 -15.11721 -14.73522 -14.59276 -14.28010 -13.93129 -13.69472 -13.48861 -13.41450 -12.71707 -12.55141 -12.44751 -11.88834 -11.70321 -11.48861 -11.33805 -11.17932 -10.96514 -10.91151 -10.84122 -10.52783 -10.43268 -10.07193 -9.60152 -9.31218 -8.91211 -8.83444 -8.37774 -8.15374 -7.91955 -7.45558 -5.99491 -4.06519 1.04612 1.41286 2.49198 3.31033 3.36092 3.39268 3.88309 4.41612 4.75616 4.89186 4.94616 5.05246 5.13714 5.15755 5.28263 5.31967 5.44253 5.56011 5.62297 5.79383 5.84586 5.91038 5.98637 6.02247 6.11505 6.15565 6.21311 6.40370 6.48192 6.49256 6.51835 6.58546 6.78481 6.83137 6.86271 6.94644 6.97778 7.05944 7.22113 7.50121 7.62093 7.90613 8.01252 8.30377 8.53324 8.97006 9.59015 11.07618 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.004376 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.750187 B = 6397.678050 C = 7242.420943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.082 4.082 3 C -0.145 4.145 4 C -0.040 4.040 5 C -0.115 4.115 6 C -0.124 4.124 7 C -0.129 4.129 8 C -0.123 4.123 9 C -0.115 4.115 10 C 0.090 3.910 11 N -0.672 5.672 12 C 0.106 3.894 13 C 0.049 3.951 14 C -0.490 4.490 15 H 0.060 0.940 16 C 0.069 3.931 17 N -0.881 5.881 18 Si 0.886 3.114 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.204 4.204 23 C -0.157 4.157 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.135 0.865 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.351 0.649 36 H 0.029 0.971 37 H 0.039 0.961 38 H 0.259 0.741 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.415 11.584 -8.524 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.082 4.082 3 C -0.165 4.165 4 C -0.040 4.040 5 C -0.133 4.133 6 C -0.142 4.142 7 C -0.147 4.147 8 C -0.141 4.141 9 C -0.133 4.133 10 C -0.039 4.039 11 N -0.304 5.304 12 C -0.023 4.023 13 C 0.048 3.952 14 C -0.528 4.528 15 H 0.078 0.922 16 C -0.133 4.133 17 N -0.518 5.518 18 Si 0.714 3.286 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.241 4.241 23 C -0.195 4.195 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.153 0.847 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.813 11.254 -8.588 17.225 hybrid contribution 1.569 0.893 0.500 1.874 sum -8.243 12.148 -8.089 16.762 Atomic orbital electron populations 1.21086 0.92294 1.01810 1.02111 1.22101 0.95946 0.94236 0.95955 1.21475 0.98893 0.90709 1.05390 1.19064 0.94836 0.93456 0.96601 1.21282 0.99991 0.92368 0.99680 1.21038 0.96026 0.97695 0.99473 1.21148 0.97095 0.98281 0.98173 1.21103 1.00179 0.92873 0.99935 1.21749 0.94977 0.98511 0.98044 1.20938 0.97034 0.93019 0.92937 1.60448 1.56749 1.06710 1.06491 1.21438 0.94295 0.89264 0.97296 1.18726 0.95305 0.89123 0.92032 1.20413 0.91126 1.21884 1.19328 0.92227 1.24996 0.97164 0.95573 0.95598 1.69994 1.04813 1.36028 1.40980 0.86764 0.77912 0.82205 0.81758 1.20285 1.21439 1.20149 1.22912 0.91433 1.09786 0.99956 1.22498 0.97261 0.98833 1.00881 0.90620 0.91764 0.92078 0.86466 0.86165 0.86387 0.86519 0.86191 0.84715 0.95452 0.91242 0.82984 0.95259 0.94291 0.93108 0.90910 0.91893 0.92378 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.19 36.00 0.29 -1.16 16 2 C -0.08 -1.17 5.51 -101.26 -0.56 -1.73 16 3 C -0.15 -2.04 9.42 -37.57 -0.35 -2.40 16 4 C -0.04 -0.52 5.22 -105.02 -0.55 -1.07 16 5 C -0.12 -1.37 9.79 -39.19 -0.38 -1.75 16 6 C -0.12 -1.32 10.03 -39.64 -0.40 -1.72 16 7 C -0.13 -1.33 10.04 -39.50 -0.40 -1.73 16 8 C -0.12 -1.35 10.03 -39.64 -0.40 -1.75 16 9 C -0.12 -1.44 7.66 -39.19 -0.30 -1.74 16 10 C 0.09 1.45 5.84 -4.97 -0.03 1.42 16 11 N -0.67 -13.21 6.42 -115.06 -0.74 -13.95 16 12 C 0.11 2.35 5.60 -3.83 -0.02 2.32 16 13 C 0.05 1.20 1.71 -155.66 -0.27 0.93 16 14 C -0.49 -13.08 8.01 -34.45 -0.28 -13.36 16 15 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 16 C 0.07 1.88 5.43 -17.82 -0.10 1.78 16 17 N -0.88 -24.74 12.66 55.43 0.70 -24.03 16 18 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 C -0.20 -4.58 9.93 -26.69 -0.27 -4.85 16 23 C -0.16 -3.75 9.19 -26.69 -0.25 -4.00 16 24 H 0.08 0.95 6.61 -51.93 -0.34 0.61 16 25 H 0.06 0.75 6.24 -51.93 -0.32 0.43 16 26 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 27 H 0.12 1.63 7.99 -52.49 -0.42 1.21 16 28 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.14 1.66 5.17 -52.49 -0.27 1.39 16 33 H 0.03 0.45 7.98 -51.93 -0.41 0.03 16 34 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.35 7.42 8.03 -39.29 -0.32 7.11 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 39 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 42 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -27.98 346.91 -10.77 -38.75 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.70 Total: 8.82 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: -4.24 Total: -30.80 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.04 Total: -37.98 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.98 -10.77 -38.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430038936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.984 kcal (2) G-P(sol) polarization free energy of solvation -27.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds