Wall clock time and date at job start Mon Mar 30 2020 01:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32569 * 119.99913 * 2 1 4 4 C 1.47812 * 119.99869 * 7.16742 * 3 2 1 5 5 C 1.39533 * 120.13826 * 213.15179 * 4 3 2 6 6 C 1.37978 * 119.85054 * 179.72090 * 5 4 3 7 7 C 1.38347 * 120.14533 * 0.53680 * 6 5 4 8 8 C 1.38340 * 120.28412 * 359.76568 * 7 6 5 9 9 C 1.37976 * 120.14171 * 359.95146 * 8 7 6 10 10 C 1.50699 * 120.00160 * 180.02562 * 2 1 3 11 11 N 1.46904 * 109.47207 * 275.00107 * 10 2 1 12 12 C 1.46896 * 110.99748 * 179.97438 * 11 10 2 13 13 C 1.53002 * 109.46660 * 185.34827 * 12 11 10 14 14 C 1.50692 * 115.55564 * 303.54917 * 13 12 11 15 15 H 1.08006 * 120.00090 * 95.37992 * 14 13 12 16 16 C 1.37875 * 119.99867 * 275.10988 * 14 13 12 17 17 N 1.31512 * 120.00394 * 355.57088 * 16 14 13 18 18 Si 1.86807 * 119.99971 * 175.56990 * 16 14 13 19 19 H 1.48503 * 109.47228 * 59.99952 * 18 16 14 20 20 H 1.48500 * 109.47209 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47079 * 299.99782 * 18 16 14 22 22 C 1.53007 * 117.49624 * 89.21975 * 13 12 11 23 23 C 1.53004 * 117.49825 * 157.87471 * 13 12 11 24 24 H 1.08995 * 109.47505 * 270.30042 * 1 2 3 25 25 H 1.08999 * 109.47110 * 30.30521 * 1 2 3 26 26 H 1.09001 * 109.47121 * 150.29945 * 1 2 3 27 27 H 1.08001 * 119.99766 * 187.16153 * 3 2 1 28 28 H 1.07993 * 120.07337 * 359.97438 * 5 4 3 29 29 H 1.08005 * 119.92822 * 180.27905 * 6 5 4 30 30 H 1.08000 * 119.85799 * 179.73959 * 7 6 5 31 31 H 1.08003 * 119.93139 * 179.97438 * 8 7 6 32 32 H 1.08001 * 120.07227 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.46988 * 155.00042 * 10 2 1 34 34 H 1.09003 * 109.47128 * 35.00329 * 10 2 1 35 35 H 1.00899 * 110.99572 * 303.95242 * 11 10 2 36 36 H 1.08997 * 109.47396 * 65.35343 * 12 11 10 37 37 H 1.08995 * 109.47637 * 305.34762 * 12 11 10 38 38 H 0.97000 * 120.00295 * 185.00404 * 17 16 14 39 39 H 1.08997 * 117.49808 * 214.99723 * 22 13 12 40 40 H 1.09005 * 117.49859 * 0.02562 * 22 13 12 41 41 H 1.09008 * 117.49677 * 359.97438 * 23 13 12 42 42 H 1.08999 * 117.49962 * 144.97105 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1481 0.0000 4 6 1.4394 2.4231 0.1597 5 6 1.8933 3.5758 -0.4823 6 6 1.2036 4.7616 -0.3338 7 6 0.0707 4.8117 0.4586 8 6 -0.3810 3.6739 1.1029 9 6 0.2963 2.4806 0.9579 10 6 2.2605 -1.3051 -0.0006 11 7 2.4008 -1.7901 1.3789 12 6 3.1316 -3.0639 1.4173 13 6 3.1419 -3.6029 2.8492 14 6 3.7158 -2.6753 3.8889 15 1 3.0605 -2.0398 4.4663 16 6 5.0767 -2.6417 4.1069 17 7 5.8655 -3.4800 3.4707 18 14 5.8004 -1.4056 5.3060 19 1 5.2261 -1.6315 6.6567 20 1 7.2749 -1.5732 5.3601 21 1 5.4755 -0.0288 4.8539 22 6 1.9822 -4.5070 3.2720 23 6 3.3721 -5.1038 3.0374 24 1 -0.3634 0.0054 1.0276 25 1 -0.3633 0.8872 -0.5186 26 1 -0.3633 -0.8927 -0.5092 27 1 3.2435 1.1517 -0.1166 28 1 2.7802 3.5390 -1.0975 29 1 1.5514 5.6535 -0.8338 30 1 -0.4632 5.7433 0.5750 31 1 -1.2659 3.7196 1.7204 32 1 -0.0576 1.5929 1.4610 33 1 3.2488 -1.1538 -0.4348 34 1 1.7132 -2.0404 -0.5904 35 1 2.8482 -1.0985 1.9616 36 1 4.1563 -2.9051 1.0815 37 1 2.6418 -3.7837 0.7616 38 1 6.8129 -3.5061 3.6771 39 1 1.6344 -4.4307 4.3022 40 1 1.2121 -4.7180 2.5299 41 1 3.5158 -5.7072 2.1410 42 1 3.9391 -5.4201 3.9129 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430038936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:48 Heat of formation + Delta-G solvation = 47.180457 kcal Electronic energy + Delta-G solvation = -19962.405750 eV Core-core repulsion = 17100.433931 eV Total energy + Delta-G solvation = -2861.971819 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.28564 -38.85524 -37.38583 -34.75311 -33.92950 -31.98356 -31.22165 -28.49108 -27.83463 -27.01020 -24.51785 -23.23776 -22.81276 -22.55094 -21.01689 -19.38979 -17.89893 -17.40661 -16.79170 -16.63530 -16.17466 -15.95150 -15.73188 -15.39539 -15.04138 -14.61574 -14.43241 -14.25602 -13.77063 -13.56170 -13.27907 -13.18010 -12.94742 -12.82002 -12.70109 -12.59222 -12.38997 -12.33126 -11.95815 -11.84195 -11.62338 -11.18398 -10.82714 -10.57658 -10.36696 -9.92553 -9.76956 -9.17641 -8.93393 -8.06796 -6.18457 0.10426 0.55544 1.41324 1.42640 1.45442 1.49276 2.43132 2.99748 3.20310 3.41282 3.72519 3.89799 3.96429 4.09329 4.15800 4.23865 4.33317 4.38087 4.56205 4.62857 4.66556 4.71214 4.73391 4.78682 4.85733 4.88558 4.99141 5.04419 5.09672 5.10965 5.15502 5.25591 5.32049 5.48443 5.58177 5.64365 5.65814 5.71588 5.77078 5.81713 5.96340 6.16332 6.34863 6.50852 6.62396 6.90100 7.49378 8.99604 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.004376 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.750187 B = 6397.678050 C = 7242.420943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.142 4.142 4 C -0.063 4.063 5 C -0.126 4.126 6 C -0.128 4.128 7 C -0.127 4.127 8 C -0.129 4.129 9 C -0.127 4.127 10 C 0.093 3.907 11 N -0.670 5.670 12 C 0.119 3.881 13 C 0.024 3.976 14 C -0.498 4.498 15 H 0.051 0.949 16 C 0.027 3.973 17 N -0.908 5.908 18 Si 0.943 3.057 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.272 1.272 22 C -0.181 4.181 23 C -0.162 4.162 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.128 0.872 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.022 0.978 34 H 0.080 0.920 35 H 0.339 0.661 36 H 0.000 1.000 37 H 0.053 0.947 38 H 0.258 0.742 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 13.323 -8.873 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.161 4.161 4 C -0.063 4.063 5 C -0.144 4.144 6 C -0.146 4.146 7 C -0.145 4.145 8 C -0.147 4.147 9 C -0.145 4.145 10 C -0.036 4.036 11 N -0.300 5.300 12 C -0.010 4.010 13 C 0.024 3.976 14 C -0.536 4.536 15 H 0.069 0.931 16 C -0.173 4.173 17 N -0.547 5.547 18 Si 0.769 3.231 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.197 1.197 22 C -0.219 4.219 23 C -0.200 4.200 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.128 0.872 28 H 0.146 0.854 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.040 0.960 34 H 0.098 0.902 35 H 0.157 0.843 36 H 0.018 0.982 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.237 12.996 -8.942 19.368 hybrid contribution 1.974 0.422 0.591 2.103 sum -9.264 13.419 -8.351 18.320 Atomic orbital electron populations 1.21027 0.90854 1.02445 1.02144 1.22038 0.96850 0.93211 0.97361 1.21580 0.98743 0.91473 1.04292 1.19120 0.95664 0.93424 0.98129 1.21499 1.00555 0.92567 0.99779 1.21380 0.95865 0.98022 0.99289 1.21539 0.96835 0.99123 0.97030 1.21401 1.00686 0.92526 1.00103 1.21828 0.95121 0.99254 0.98290 1.20959 0.97280 0.94392 0.90971 1.60438 1.55531 1.05647 1.08411 1.21204 0.93134 0.90724 0.95970 1.18898 0.96789 0.89080 0.92869 1.20619 0.91314 1.22002 1.19651 0.93110 1.25611 0.97545 0.96981 0.97202 1.70100 1.04816 1.37467 1.42278 0.85860 0.77058 0.80284 0.79913 1.19966 1.21365 1.19708 1.22893 0.91054 1.07482 1.00428 1.22398 0.98321 0.98886 1.00418 0.90821 0.90989 0.91526 0.87155 0.85365 0.83934 0.83798 0.84189 0.85052 0.95975 0.90164 0.84260 0.98228 0.92817 0.93331 0.91151 0.89508 0.91175 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.60 8.19 71.24 0.58 -2.01 16 2 C -0.09 -2.65 5.51 -17.60 -0.10 -2.75 16 3 C -0.14 -3.96 9.42 23.65 0.22 -3.74 16 4 C -0.06 -1.63 5.22 -20.12 -0.11 -1.73 16 5 C -0.13 -2.83 9.79 22.52 0.22 -2.61 16 6 C -0.13 -2.39 10.03 22.23 0.22 -2.16 16 7 C -0.13 -2.26 10.04 22.32 0.22 -2.04 16 8 C -0.13 -2.56 10.03 22.23 0.22 -2.34 16 9 C -0.13 -3.04 7.66 22.52 0.17 -2.87 16 10 C 0.09 2.97 5.84 85.56 0.50 3.47 16 11 N -0.67 -26.25 6.42 -517.94 -3.33 -29.58 16 12 C 0.12 5.27 5.60 86.30 0.48 5.76 16 13 C 0.02 1.19 1.71 -52.93 -0.09 1.10 16 14 C -0.50 -26.83 8.01 25.60 0.21 -26.63 16 15 H 0.05 2.77 7.82 -2.91 -0.02 2.74 16 16 C 0.03 1.45 5.43 84.65 0.46 1.91 16 17 N -0.91 -51.82 12.66 21.45 0.27 -51.54 16 18 Si 0.94 43.46 29.54 68.60 2.03 45.49 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 C -0.18 -7.95 9.93 30.62 0.30 -7.65 16 23 C -0.16 -7.76 9.19 30.62 0.28 -7.48 16 24 H 0.07 1.78 6.61 -2.39 -0.02 1.77 16 25 H 0.07 1.60 6.24 -2.39 -0.01 1.58 16 26 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 27 H 0.11 3.14 7.99 -2.91 -0.02 3.11 16 28 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 30 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 31 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.13 3.14 5.17 -2.91 -0.02 3.13 16 33 H 0.02 0.73 7.98 -2.39 -0.02 0.71 16 34 H 0.08 2.38 8.10 -2.39 -0.02 2.36 16 35 H 0.34 14.56 8.03 -89.70 -0.72 13.84 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.05 2.19 8.09 -2.39 -0.02 2.17 16 38 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 39 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 41 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 42 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -59.21 346.91 3.05 -56.16 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.27 Total: 31.26 kcal Atomic # 6 Polarization: -55.60 SS G_CDS: 3.81 Total: -51.79 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -3.05 Total: -81.12 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -59.21 3.05 -56.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430038936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.342 kcal (2) G-P(sol) polarization free energy of solvation -59.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds