Wall clock time and date at job start Mon Mar 30 2020 01:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00137 * 2 1 4 4 H 1.48493 * 109.46888 * 240.00205 * 3 2 1 5 5 H 1.48500 * 109.46734 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46837 * 120.00163 * 3 2 1 7 7 C 1.37882 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00012 * 175.05352 * 7 2 1 9 9 C 1.50696 * 119.99614 * 355.33020 * 7 2 1 10 10 C 1.53006 * 115.55061 * 279.20298 * 9 7 2 11 11 N 1.46901 * 109.46509 * 294.92273 * 10 9 7 12 12 C 1.46909 * 110.99692 * 174.86501 * 11 10 9 13 13 C 1.52993 * 109.47130 * 179.97438 * 12 11 10 14 14 H 1.08995 * 115.55645 * 330.58838 * 13 12 11 15 15 C 1.53005 * 117.49403 * 116.25622 * 13 12 11 16 16 C 1.52998 * 117.49925 * 184.90973 * 13 12 11 17 17 H 1.09002 * 117.49839 * 0.02562 * 16 13 12 18 18 C 1.50701 * 117.49704 * 144.99855 * 16 13 12 19 19 C 1.38240 * 119.99947 * 59.73478 * 18 16 13 20 20 C 1.38232 * 120.00204 * 179.78318 * 19 18 16 21 21 C 1.38234 * 119.99925 * 0.44578 * 20 19 18 22 22 C 1.38237 * 120.00246 * 359.80637 * 21 20 19 23 23 C 1.38236 * 120.00537 * 240.00338 * 18 16 13 24 24 C 1.53004 * 117.50111 * 133.49505 * 9 7 2 25 25 C 1.52999 * 59.99921 * 252.50729 * 24 9 7 26 26 H 0.97000 * 120.00249 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.46747 * 54.92174 * 10 9 7 28 28 H 1.08997 * 109.47155 * 174.92452 * 10 9 7 29 29 H 1.00902 * 111.00498 * 298.81958 * 11 10 9 30 30 H 1.08996 * 109.47209 * 300.00645 * 12 11 10 31 31 H 1.09004 * 109.46787 * 60.00170 * 12 11 10 32 32 H 1.09008 * 117.49893 * 214.97873 * 15 13 12 33 33 H 1.08999 * 117.49985 * 359.97438 * 15 13 12 34 34 H 1.08001 * 119.99512 * 359.97438 * 19 18 16 35 35 H 1.08000 * 120.00151 * 180.26730 * 20 19 18 36 36 H 1.08002 * 120.00673 * 179.82988 * 21 20 19 37 37 H 1.07992 * 120.00825 * 180.02562 * 22 21 20 38 38 H 1.08006 * 119.99636 * 359.97438 * 23 18 16 39 39 H 1.09004 * 117.49547 * 359.97438 * 24 9 7 40 40 H 1.08997 * 117.49747 * 145.01386 * 24 9 7 41 41 H 1.08999 * 117.49828 * 252.50751 * 25 24 9 42 42 H 1.09003 * 117.49679 * 107.49140 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0815 -1.1957 -0.0812 9 6 1.2548 -2.4970 0.1051 10 6 0.8316 -2.9021 1.5186 11 7 2.0271 -3.1592 2.3327 12 6 1.6639 -3.4326 3.7297 13 6 2.9319 -3.6955 4.5443 14 1 3.7644 -4.1304 3.9912 15 6 3.2670 -2.7114 5.6669 16 6 2.7587 -4.1150 6.0054 17 1 1.7412 -4.2041 6.3862 18 6 3.7520 -5.0980 6.5695 19 6 5.0980 -4.7840 6.5930 20 6 6.0087 -5.6837 7.1146 21 6 5.5744 -6.9013 7.6043 22 6 4.2290 -7.2175 7.5761 23 6 3.3178 -6.3159 7.0585 24 6 1.6415 -3.6153 -0.8648 25 6 0.3184 -2.8687 -1.0463 26 1 -0.4850 0.8400 0.0004 27 1 0.2516 -2.0968 1.9690 28 1 0.2234 -3.8053 1.4709 29 1 2.5722 -3.9153 1.9462 30 1 1.1376 -2.5724 4.1433 31 1 1.0171 -4.3090 3.7720 32 1 4.3200 -2.4992 5.8526 33 1 2.5842 -1.8766 5.8248 34 1 5.4378 -3.8344 6.2066 35 1 7.0598 -5.4366 7.1368 36 1 6.2861 -7.6054 8.0093 37 1 3.8895 -8.1685 7.9590 38 1 2.2666 -6.5628 7.0366 39 1 2.4379 -3.4085 -1.5797 40 1 1.5947 -4.6399 -0.4960 41 1 -0.5988 -3.4022 -0.7970 42 1 0.2447 -2.1708 -1.8804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430044811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:17 Heat of formation + Delta-G solvation = 69.938556 kcal Electronic energy + Delta-G solvation = -19663.650013 eV Core-core repulsion = 16802.665059 eV Total energy + Delta-G solvation = -2860.984954 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.74272 -37.55600 -36.65319 -33.78581 -31.78788 -31.06924 -30.61447 -26.91589 -25.28095 -23.87088 -23.10877 -22.41422 -21.03979 -20.65593 -20.16306 -18.86665 -17.22722 -16.15465 -15.51777 -15.08647 -14.88620 -14.60147 -14.39947 -14.01632 -13.57643 -13.49085 -13.33498 -12.95059 -12.74328 -12.49311 -11.80378 -11.62509 -11.39523 -11.21620 -11.05856 -10.90960 -10.81581 -10.67445 -10.47288 -10.40397 -10.11197 -9.91463 -9.32051 -9.04252 -8.85744 -8.57064 -8.30599 -7.98720 -7.48576 -5.90158 -3.91867 1.21605 1.28176 3.39819 3.43422 3.47893 3.53034 4.09719 4.42228 4.52578 4.75271 4.82480 4.90271 4.95343 5.00415 5.15241 5.30033 5.37648 5.40788 5.49796 5.55465 5.64798 5.77832 5.88823 5.95489 5.98046 5.99854 6.11809 6.23637 6.36570 6.37746 6.39336 6.47082 6.54159 6.57989 6.67530 6.78842 6.88622 6.94675 7.17981 7.54048 7.60613 7.99237 8.03142 8.20721 8.60927 9.06327 9.70909 11.19450 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.003512 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.679219 B = 7970.476218 C = 8522.309499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.468 4.468 8 H 0.057 0.943 9 C 0.053 3.947 10 C 0.108 3.892 11 N -0.666 5.666 12 C 0.089 3.911 13 C -0.118 4.118 14 H 0.106 0.894 15 C -0.163 4.163 16 C -0.129 4.129 17 H 0.111 0.889 18 C -0.041 4.041 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.132 4.132 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.216 4.216 25 C -0.158 4.158 26 H 0.257 0.743 27 H 0.074 0.926 28 H -0.006 1.006 29 H 0.330 0.670 30 H 0.070 0.930 31 H 0.021 0.979 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.699 -11.562 14.387 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.506 4.506 8 H 0.076 0.924 9 C 0.052 3.948 10 C -0.020 4.020 11 N -0.296 5.296 12 C -0.040 4.040 13 C -0.137 4.137 14 H 0.125 0.875 15 C -0.200 4.200 16 C -0.147 4.147 17 H 0.129 0.871 18 C -0.041 4.041 19 C -0.139 4.139 20 C -0.135 4.135 21 C -0.150 4.150 22 C -0.137 4.137 23 C -0.135 4.135 24 C -0.253 4.253 25 C -0.196 4.196 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.012 0.988 29 H 0.147 0.853 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.647 -10.748 14.497 19.232 hybrid contribution -0.001 -0.016 -0.054 0.057 sum 6.646 -10.765 14.443 19.200 Atomic orbital electron populations 1.70001 1.05787 1.26182 1.50604 1.24928 0.94757 0.98697 0.95070 0.86721 0.79622 0.83383 0.78577 1.20518 1.21602 1.20183 1.20264 0.92482 0.88492 1.49362 0.92435 1.18807 0.97396 0.92665 0.85931 1.21515 0.89213 0.96613 0.94706 1.60240 1.22583 1.46733 1.00024 1.21506 0.93410 0.98802 0.90306 1.22434 1.00465 1.02132 0.88661 0.87549 1.23179 1.02006 0.92028 1.02760 1.21227 0.98627 0.95700 0.99192 0.87141 1.19232 0.93394 0.94196 0.97267 1.21136 0.92766 0.99955 1.00080 1.21132 0.99487 0.94175 0.98744 1.21116 0.95841 0.97099 1.00911 1.21114 0.93416 0.99336 0.99865 1.20986 0.99772 0.93507 0.99264 1.22957 0.99731 0.95694 1.06964 1.22526 0.91052 1.02044 1.04000 0.93324 0.90791 0.98762 0.85313 0.91125 0.96114 0.88663 0.88213 0.85742 0.86178 0.86365 0.86234 0.86137 0.90586 0.92243 0.92293 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 12.86 55.43 0.71 -24.70 16 2 C 0.07 1.86 5.44 -17.82 -0.10 1.76 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.47 -12.88 8.72 -34.44 -0.30 -13.18 16 8 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 9 C 0.05 1.30 1.55 -155.66 -0.24 1.06 16 10 C 0.11 2.43 5.51 -3.82 -0.02 2.40 16 11 N -0.67 -13.05 6.38 -113.78 -0.73 -13.77 16 12 C 0.09 1.45 5.96 -3.82 -0.02 1.42 16 13 C -0.12 -1.64 5.58 -90.62 -0.51 -2.14 16 14 H 0.11 1.52 8.13 -51.93 -0.42 1.10 16 15 C -0.16 -2.05 9.51 -26.69 -0.25 -2.30 16 16 C -0.13 -1.54 5.76 -91.74 -0.53 -2.07 16 17 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 18 C -0.04 -0.48 5.61 -104.62 -0.59 -1.06 16 19 C -0.12 -1.35 9.29 -39.58 -0.37 -1.72 16 20 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 21 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.12 -1.26 9.74 -39.58 -0.39 -1.64 16 24 C -0.22 -4.75 9.96 -26.73 -0.27 -5.02 16 25 C -0.16 -3.77 9.39 -26.73 -0.25 -4.02 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 27 H 0.07 1.85 8.13 -51.93 -0.42 1.43 16 28 H -0.01 -0.12 8.09 -51.93 -0.42 -0.54 16 29 H 0.33 6.08 8.78 -39.29 -0.34 5.74 16 30 H 0.07 1.19 7.88 -51.93 -0.41 0.78 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.10 1.10 6.19 -51.92 -0.32 0.78 16 33 H 0.10 1.26 8.03 -51.93 -0.42 0.84 16 34 H 0.12 1.30 6.03 -52.49 -0.32 0.98 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.08 2.11 8.14 -51.93 -0.42 1.68 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -29.01 350.72 -11.62 -40.63 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.85 Total: 7.22 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -5.02 Total: -31.26 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.01 Total: -38.48 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.01 -11.62 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430044811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.564 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds