Wall clock time and date at job start Mon Mar 30 2020 01:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99981 * 2 1 4 4 H 1.48501 * 109.47027 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46901 * 120.00210 * 3 2 1 6 6 H 1.48505 * 109.47437 * 240.00290 * 3 2 1 7 7 C 1.37875 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00050 * 185.24432 * 7 2 1 9 9 C 1.50702 * 119.99872 * 5.24209 * 7 2 1 10 10 C 1.53002 * 115.55136 * 275.15074 * 9 7 2 11 11 N 1.46901 * 109.47065 * 294.81221 * 10 9 7 12 12 C 1.46896 * 110.99848 * 185.37331 * 11 10 9 13 13 C 1.53003 * 109.47453 * 179.97438 * 12 11 10 14 14 H 1.09001 * 115.54329 * 29.40953 * 13 12 11 15 15 C 1.53000 * 117.49616 * 243.74755 * 13 12 11 16 16 C 1.52997 * 117.50261 * 175.08610 * 13 12 11 17 17 H 1.08996 * 117.49677 * 214.97981 * 16 13 12 18 18 C 1.50694 * 117.49673 * 359.97438 * 16 13 12 19 19 C 1.38239 * 120.00025 * 59.73208 * 18 16 13 20 20 C 1.38239 * 119.99822 * 179.78698 * 19 18 16 21 21 C 1.38234 * 120.00218 * 0.44117 * 20 19 18 22 22 C 1.38241 * 119.99982 * 359.81002 * 21 20 19 23 23 C 1.38229 * 119.99600 * 359.97438 * 22 21 20 24 24 C 1.53007 * 117.49655 * 129.48342 * 9 7 2 25 25 C 1.53002 * 117.49641 * 60.82549 * 9 7 2 26 26 H 0.96994 * 119.99693 * 354.98969 * 1 2 3 27 27 H 1.08999 * 109.46996 * 54.81311 * 10 9 7 28 28 H 1.08996 * 109.46814 * 174.80852 * 10 9 7 29 29 H 1.00896 * 111.00396 * 61.41498 * 11 10 9 30 30 H 1.08999 * 109.47050 * 299.99724 * 12 11 10 31 31 H 1.09002 * 109.47524 * 59.99308 * 12 11 10 32 32 H 1.08996 * 117.50309 * 359.97438 * 15 13 12 33 33 H 1.09002 * 117.49830 * 144.99541 * 15 13 12 34 34 H 1.07997 * 120.00277 * 359.97438 * 19 18 16 35 35 H 1.08003 * 119.99747 * 180.27602 * 20 19 18 36 36 H 1.08000 * 120.00407 * 179.84083 * 21 20 19 37 37 H 1.07997 * 120.00001 * 180.02562 * 22 21 20 38 38 H 1.08008 * 119.99601 * 179.97438 * 23 22 21 39 39 H 1.09002 * 117.49659 * 359.97438 * 24 9 7 40 40 H 1.08996 * 117.49733 * 145.02426 * 24 9 7 41 41 H 1.09004 * 117.49357 * 214.97711 * 25 9 7 42 42 H 1.08996 * 117.50301 * 359.96937 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0812 -1.1960 0.0850 9 6 1.2558 -2.4964 -0.1204 10 6 0.7120 -3.0680 1.1906 11 7 1.8325 -3.4306 2.0687 12 6 1.3527 -4.1004 3.2849 13 6 2.5454 -4.4625 4.1721 14 1 3.4097 -3.8034 4.0897 15 6 2.8111 -5.9475 4.4271 16 6 2.2467 -5.0675 5.5452 17 1 2.9146 -4.8068 6.3662 18 6 0.8000 -5.2606 5.9206 19 6 -0.0129 -6.0680 5.1471 20 6 -1.3388 -6.2487 5.4940 21 6 -1.8541 -5.6147 6.6091 22 6 -1.0425 -4.8032 7.3796 23 6 0.2844 -4.6261 7.0353 24 6 1.7335 -3.4909 -1.1804 25 6 0.4268 -2.7206 -1.3866 26 1 -0.4849 0.8368 0.0734 27 1 0.0915 -2.3196 1.6835 28 1 0.1138 -3.9544 0.9799 29 1 2.3893 -2.6209 2.2975 30 1 0.6849 -3.4320 3.8283 31 1 0.8147 -5.0081 3.0116 32 1 2.1359 -6.6665 3.9632 33 1 3.8502 -6.2655 4.5126 34 1 0.3886 -6.5601 4.2736 35 1 -1.9728 -6.8830 4.8922 36 1 -2.8907 -5.7538 6.8786 37 1 -1.4450 -4.3082 8.2510 38 1 0.9184 -3.9917 7.6371 39 1 2.5891 -3.2030 -1.7914 40 1 1.6599 -4.5524 -0.9440 41 1 -0.5058 -3.2758 -1.2858 42 1 0.4226 -1.9261 -2.1328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430044812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:19 Heat of formation + Delta-G solvation = 55.786194 kcal Electronic energy + Delta-G solvation = -20143.267693 eV Core-core repulsion = 17281.669047 eV Total energy + Delta-G solvation = -2861.598646 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.74215 -38.85515 -38.01864 -35.20565 -33.94436 -31.84202 -31.36318 -28.58266 -27.32762 -24.79911 -24.44596 -23.49431 -22.81424 -21.84366 -21.11982 -20.54825 -17.96987 -17.68947 -16.72722 -16.63654 -16.41546 -15.98388 -15.71569 -15.49935 -15.03322 -14.64095 -14.42447 -14.22537 -13.83246 -13.66002 -13.22855 -13.20267 -12.90236 -12.84007 -12.78339 -12.33761 -12.30800 -11.99920 -11.86434 -11.74030 -11.46275 -11.23709 -10.94733 -10.73492 -10.38706 -9.92816 -9.79657 -9.39313 -9.10693 -8.07492 -6.19261 0.43444 0.51890 1.42301 1.44094 1.50827 2.43703 2.66933 3.15937 3.20653 3.31522 3.62408 3.72375 3.94162 4.08366 4.14892 4.16410 4.27131 4.32332 4.35674 4.49297 4.61011 4.63901 4.67973 4.74041 4.76876 4.82096 4.96980 5.00895 5.04892 5.07832 5.08860 5.17892 5.22514 5.29063 5.34555 5.61024 5.64332 5.67503 5.68560 5.75001 5.80644 6.14405 6.35772 6.48819 6.64895 6.90050 7.49066 8.99995 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019167 B = 0.004192 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.500174 B = 6678.410968 C = 6854.724380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.948 3.052 4 H -0.289 1.289 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.502 4.502 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.123 3.877 11 N -0.674 5.674 12 C 0.099 3.901 13 C -0.140 4.140 14 H 0.110 0.890 15 C -0.154 4.154 16 C -0.114 4.114 17 H 0.127 0.873 18 C -0.060 4.060 19 C -0.134 4.134 20 C -0.130 4.130 21 C -0.136 4.136 22 C -0.126 4.126 23 C -0.130 4.130 24 C -0.176 4.176 25 C -0.168 4.168 26 H 0.258 0.742 27 H -0.001 1.001 28 H 0.043 0.957 29 H 0.340 0.660 30 H 0.006 0.994 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 -11.828 14.090 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.214 1.214 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.024 3.976 10 C -0.007 4.007 11 N -0.305 5.305 12 C -0.031 4.031 13 C -0.159 4.159 14 H 0.128 0.872 15 C -0.191 4.191 16 C -0.133 4.133 17 H 0.145 0.855 18 C -0.060 4.060 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.154 4.154 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.213 4.213 25 C -0.206 4.206 26 H 0.067 0.933 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.158 0.842 30 H 0.024 0.976 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.132 0.868 34 H 0.142 0.858 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.436 -12.293 13.692 18.406 hybrid contribution -0.332 1.934 0.194 1.971 sum 0.104 -10.359 13.887 17.325 Atomic orbital electron populations 1.70105 1.07155 1.27201 1.50438 1.25678 0.95474 1.01840 0.94567 0.85777 0.78441 0.79528 0.78867 1.21439 1.19449 1.19895 1.20668 0.92699 0.90034 1.50585 0.92778 1.18897 0.98262 0.93623 0.86797 1.21122 0.91001 0.94969 0.93580 1.60442 1.22124 1.32107 1.15813 1.21429 0.94731 0.97656 0.89246 1.22278 0.99694 0.97932 0.95990 0.87235 1.23240 1.02745 0.92566 1.00519 1.21285 0.93575 1.05678 0.92744 0.85508 1.19320 0.94264 0.96950 0.95431 1.21277 0.94475 0.99454 0.99960 1.21421 0.95445 1.00224 0.97678 1.21455 1.00797 0.97635 0.95512 1.21438 0.93774 0.98724 1.00496 1.21231 0.96321 0.99930 0.97301 1.22836 0.96736 0.96438 1.05296 1.22447 0.93465 1.01479 1.03225 0.93311 0.98301 0.93859 0.84247 0.97626 0.91463 0.88452 0.86793 0.85793 0.84738 0.84235 0.84112 0.84916 0.90871 0.89658 0.91271 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.54 12.90 21.45 0.28 -52.27 16 2 C 0.02 1.33 5.40 84.65 0.46 1.79 16 3 Si 0.95 43.36 29.54 68.60 2.03 45.38 16 4 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.50 -27.19 8.33 25.60 0.21 -26.97 16 8 H 0.05 2.92 7.82 -2.91 -0.02 2.90 16 9 C 0.02 1.24 1.57 -52.92 -0.08 1.16 16 10 C 0.12 5.66 5.54 86.30 0.48 6.14 16 11 N -0.67 -26.86 6.47 -513.89 -3.32 -30.18 16 12 C 0.10 3.28 4.61 86.30 0.40 3.67 16 13 C -0.14 -3.73 5.95 -10.79 -0.06 -3.80 16 14 H 0.11 2.93 8.13 -2.39 -0.02 2.91 16 15 C -0.15 -3.31 9.52 30.62 0.29 -3.02 16 16 C -0.11 -2.54 6.04 -11.52 -0.07 -2.61 16 17 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 18 C -0.06 -1.43 4.97 -19.87 -0.10 -1.53 16 19 C -0.13 -3.22 7.86 22.27 0.18 -3.05 16 20 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 21 C -0.14 -2.77 10.05 22.27 0.22 -2.55 16 22 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 23 C -0.13 -2.89 9.74 22.27 0.22 -2.68 16 24 C -0.18 -7.80 9.96 30.62 0.30 -7.50 16 25 C -0.17 -8.14 9.42 30.62 0.29 -7.86 16 26 H 0.26 14.33 8.32 -92.71 -0.77 13.56 16 27 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.04 1.89 8.08 -2.39 -0.02 1.87 16 29 H 0.34 14.23 8.30 -89.70 -0.74 13.49 16 30 H 0.01 0.21 8.02 -2.39 -0.02 0.19 16 31 H 0.07 2.18 6.19 -2.39 -0.01 2.16 16 32 H 0.10 2.09 6.08 -2.39 -0.01 2.07 16 33 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.12 2.86 5.19 -2.91 -0.02 2.85 16 35 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 37 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 40 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 41 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 42 H 0.06 2.96 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -60.38 344.62 2.41 -57.97 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.25 Total: 32.90 kcal Atomic # 6 Polarization: -56.99 SS G_CDS: 3.18 Total: -53.81 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -3.05 Total: -82.45 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -60.38 2.41 -57.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430044812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.757 kcal (2) G-P(sol) polarization free energy of solvation -60.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds