Wall clock time and date at job start Mon Mar 30 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99979 * 2 1 4 4 N 1.46907 * 109.47121 * 124.11924 * 3 2 1 5 5 C 1.46904 * 110.99819 * 299.06955 * 4 3 2 6 6 C 1.50703 * 109.46897 * 288.06680 * 5 4 3 7 7 H 1.07994 * 120.00199 * 354.70605 * 6 5 4 8 8 C 1.37877 * 119.99672 * 174.70880 * 6 5 4 9 9 N 1.31518 * 119.99925 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99661 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46981 * 90.00152 * 10 8 6 12 12 H 1.48506 * 109.46851 * 209.99751 * 10 8 6 13 13 H 1.48494 * 109.47276 * 329.99689 * 10 8 6 14 14 C 1.46904 * 111.00185 * 63.02254 * 4 3 2 15 15 C 1.52999 * 109.46988 * 66.04568 * 14 4 3 16 16 H 1.09000 * 115.56356 * 330.68673 * 15 14 4 17 17 C 1.53070 * 117.51358 * 116.39658 * 15 14 4 18 18 C 1.52995 * 59.98529 * 107.47440 * 17 15 14 19 19 H 1.09004 * 117.49471 * 107.50530 * 18 17 15 20 20 C 1.50699 * 117.49840 * 252.49532 * 18 17 15 21 21 C 1.38235 * 119.99985 * 188.74968 * 20 18 17 22 22 C 1.38229 * 120.00181 * 179.97438 * 21 20 18 23 23 C 1.38235 * 120.00114 * 359.96991 * 22 21 20 24 24 C 1.38245 * 119.99922 * 0.28601 * 23 22 21 25 25 C 1.38235 * 119.99512 * 359.50798 * 24 23 22 26 26 H 1.07999 * 119.99958 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00044 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00044 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47149 * 4.11719 * 3 2 1 30 30 H 1.08996 * 109.47093 * 244.11267 * 3 2 1 31 31 H 1.08998 * 109.47296 * 48.06729 * 5 4 3 32 32 H 1.09000 * 109.46563 * 168.06757 * 5 4 3 33 33 H 0.97004 * 119.99160 * 180.02562 * 9 8 6 34 34 H 1.09008 * 109.47078 * 306.04887 * 14 4 3 35 35 H 1.08994 * 109.47278 * 186.04799 * 14 4 3 36 36 H 1.09001 * 117.51149 * 359.97438 * 17 15 14 37 37 H 1.09004 * 117.48876 * 214.96702 * 17 15 14 38 38 H 1.08005 * 119.99765 * 359.97438 * 21 20 18 39 39 H 1.07998 * 120.00325 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.00528 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.99969 * 179.71983 * 24 23 22 42 42 H 1.08003 * 119.99792 * 180.27994 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9812 1.3408 1.1466 5 6 2.2443 1.2433 2.4138 6 6 1.5076 2.5334 2.6669 7 1 1.6466 3.3739 2.0031 8 6 0.6560 2.6406 3.7459 9 7 0.4863 1.6169 4.5539 10 14 -0.2567 4.2399 4.0600 11 1 -1.5606 4.2134 3.3498 12 1 -0.4903 4.3984 5.5180 13 1 0.5552 5.3792 3.5621 14 6 3.9938 0.2815 1.0437 15 6 4.9007 0.5579 -0.1571 16 1 4.4370 1.0984 -0.9822 17 6 6.3809 0.8297 0.1225 18 6 5.9520 -0.4975 -0.5061 19 1 6.1796 -0.6516 -1.5609 20 6 6.0149 -1.7297 0.3591 21 6 5.8153 -2.9780 -0.2003 22 6 5.8735 -4.1084 0.5932 23 6 6.1320 -3.9906 1.9461 24 6 6.3264 -2.7419 2.5065 25 6 6.2724 -1.6119 1.7122 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3575 2.1322 0.0738 30 1 2.6337 1.3954 -0.9245 31 1 1.5299 0.4221 2.3565 32 1 2.9450 1.0592 3.2282 33 1 -0.1132 1.6924 5.3129 34 1 3.5002 -0.6815 0.9121 35 1 4.5925 0.2614 1.9543 36 1 6.7085 0.8120 1.1620 37 1 6.8903 1.5491 -0.5187 38 1 5.6138 -3.0701 -1.2573 39 1 5.7179 -5.0836 0.1562 40 1 6.1779 -4.8737 2.5661 41 1 6.5238 -2.6495 3.5643 42 1 6.4287 -0.6366 2.1492 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430106621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:28 Heat of formation + Delta-G solvation = 59.506495 kcal Electronic energy + Delta-G solvation = -20544.204056 eV Core-core repulsion = 17682.766734 eV Total energy + Delta-G solvation = -2861.437322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.82587 -39.13363 -37.40861 -34.82534 -33.56857 -31.84195 -31.38449 -29.59839 -27.79500 -25.90371 -24.68338 -23.46665 -22.81214 -21.82236 -21.01392 -19.98436 -18.36498 -17.63345 -17.13332 -16.70713 -16.28194 -16.07925 -15.75420 -15.53172 -15.03479 -14.77042 -14.36246 -14.20434 -14.05815 -13.77397 -13.38576 -13.18460 -12.93579 -12.73855 -12.60737 -12.40341 -12.22184 -12.13128 -12.03661 -11.84130 -11.72053 -11.41885 -11.13955 -10.85835 -10.57752 -10.17544 -9.79135 -9.38620 -8.91727 -8.15988 -6.25632 0.44098 0.52373 1.40917 1.42160 1.44283 1.53815 2.41831 2.68628 3.16253 3.18132 3.40176 3.65524 3.94480 4.06484 4.08262 4.10586 4.15777 4.27807 4.32093 4.33913 4.47839 4.61961 4.62846 4.72081 4.77934 4.84574 4.96612 4.98926 5.09425 5.12005 5.18305 5.23616 5.24070 5.35523 5.37553 5.61357 5.64994 5.68928 5.72791 5.76355 5.90030 6.12774 6.15074 6.40885 6.68124 6.91085 7.43699 8.94367 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019990 B = 0.004652 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.370907 B = 6017.001100 C = 6219.317996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.187 4.187 3 C 0.091 3.909 4 N -0.533 5.533 5 C 0.209 3.791 6 C -0.515 4.515 7 H 0.060 0.940 8 C 0.004 3.996 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.094 3.906 15 C -0.134 4.134 16 H 0.117 0.883 17 C -0.163 4.163 18 C -0.109 4.109 19 H 0.133 0.867 20 C -0.059 4.059 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.136 4.136 24 C -0.133 4.133 25 C -0.136 4.136 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.092 0.908 31 H -0.022 1.022 32 H -0.012 1.012 33 H 0.262 0.738 34 H 0.020 0.980 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.128 0.872 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.913 -8.731 -11.210 17.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.206 4.206 3 C -0.037 4.037 4 N -0.255 5.255 5 C 0.083 3.917 6 C -0.553 4.553 7 H 0.078 0.922 8 C -0.194 4.194 9 N -0.576 5.576 10 Si 0.789 3.211 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.189 1.189 14 C -0.034 4.034 15 C -0.153 4.153 16 H 0.135 0.865 17 C -0.200 4.200 18 C -0.127 4.127 19 H 0.151 0.849 20 C -0.059 4.059 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.151 4.151 25 C -0.154 4.154 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.110 0.890 31 H -0.004 1.004 32 H 0.007 0.993 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.146 0.854 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.094 -8.306 -11.045 17.721 hybrid contribution -1.108 -0.173 0.925 1.454 sum 9.985 -8.479 -10.120 16.553 Atomic orbital electron populations 1.23846 0.96090 1.01718 1.00343 1.23559 0.96897 0.99802 1.00387 1.21270 0.94426 0.93958 0.94013 1.62292 1.14892 1.45481 1.02876 1.19346 0.90941 0.95547 0.85876 1.21417 1.24400 0.98873 1.10610 0.92171 1.25844 0.97752 1.00008 0.95785 1.70101 1.38589 1.32421 1.16495 0.85465 0.78849 0.79649 0.77172 1.19834 1.20942 1.18925 1.21536 0.93016 0.91996 0.96840 1.22334 0.90913 1.02363 0.99654 0.86546 1.23234 0.96616 0.98104 1.02001 1.21283 1.04214 0.87592 0.99608 0.84884 1.19326 0.98838 0.94265 0.93430 1.21234 1.00414 0.91660 1.01002 1.21449 0.99415 0.99383 0.93975 1.21436 1.00263 0.97726 0.95922 1.21391 1.00311 0.93063 1.00352 1.21251 1.01025 0.98951 0.94160 0.87907 0.89132 0.88096 0.91859 0.88959 1.00391 0.99344 0.92906 0.96216 0.93004 0.89330 0.86609 0.84321 0.83748 0.84282 0.85411 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.58 14.32 67.78 0.97 -5.61 16 2 C -0.19 -6.96 7.45 25.65 0.19 -6.77 16 3 C 0.09 3.50 5.49 85.56 0.47 3.97 16 4 N -0.53 -23.28 4.66 -905.33 -4.22 -27.49 16 5 C 0.21 11.36 4.59 85.56 0.39 11.76 16 6 C -0.51 -29.54 8.51 25.60 0.22 -29.32 16 7 H 0.06 3.40 7.67 -2.91 -0.02 3.38 16 8 C 0.00 0.22 5.46 84.65 0.46 0.68 16 9 N -0.94 -57.17 13.29 21.45 0.28 -56.88 16 10 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 14 C 0.09 3.48 3.72 86.30 0.32 3.80 16 15 C -0.13 -3.80 5.68 -10.77 -0.06 -3.86 16 16 H 0.12 3.14 6.36 -2.39 -0.02 3.12 16 17 C -0.16 -3.94 9.52 30.62 0.29 -3.65 16 18 C -0.11 -2.53 6.04 -11.54 -0.07 -2.60 16 19 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 20 C -0.06 -1.50 4.97 -19.87 -0.10 -1.59 16 21 C -0.13 -2.81 9.74 22.27 0.22 -2.60 16 22 C -0.12 -2.61 10.05 22.27 0.22 -2.38 16 23 C -0.14 -3.02 10.05 22.27 0.22 -2.80 16 24 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 25 C -0.14 -3.75 7.87 22.27 0.18 -3.58 16 26 H 0.10 3.28 8.06 -2.91 -0.02 3.25 16 27 H 0.09 3.36 7.84 -2.91 -0.02 3.34 16 28 H 0.10 3.64 6.76 -2.91 -0.02 3.62 16 29 H 0.06 2.67 7.02 -2.39 -0.02 2.65 16 30 H 0.09 2.96 6.24 -2.39 -0.01 2.94 16 31 H -0.02 -1.28 6.75 -2.39 -0.02 -1.29 16 32 H -0.01 -0.69 7.81 -2.39 -0.02 -0.71 16 33 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.02 0.77 6.16 -2.38 -0.01 0.75 16 35 H 0.05 2.05 5.94 -2.39 -0.01 2.04 16 36 H 0.09 2.30 6.07 -2.39 -0.01 2.29 16 37 H 0.12 2.30 8.14 -2.39 -0.02 2.29 16 38 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 39 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 41 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.12 3.28 5.20 -2.91 -0.02 3.27 16 Total: -1.00 -65.83 337.02 3.23 -62.60 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.99 Total: 22.62 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 4.15 Total: -47.72 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -3.93 Total: -84.38 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.83 3.23 -62.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430106621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.103 kcal (2) G-P(sol) polarization free energy of solvation -65.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds