Wall clock time and date at job start Mon Mar 30 2020 02:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50693 * 120.00463 * 2 1 4 4 N 1.46897 * 109.47323 * 125.27458 * 3 2 1 5 5 C 1.46897 * 111.00169 * 287.93885 * 4 3 2 6 6 C 1.50693 * 109.47171 * 164.58022 * 5 4 3 7 7 H 1.08001 * 120.00029 * 1.07722 * 6 5 4 8 8 C 1.37878 * 120.00151 * 181.08748 * 6 5 4 9 9 N 1.31511 * 120.00086 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99751 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47125 * 90.00598 * 10 8 6 12 12 H 1.48504 * 109.46945 * 210.00647 * 10 8 6 13 13 H 1.48499 * 109.47429 * 330.00221 * 10 8 6 14 14 C 1.46904 * 111.00064 * 163.98219 * 4 3 2 15 15 C 1.53008 * 109.47129 * 293.95792 * 14 4 3 16 16 H 1.08994 * 115.54668 * 330.72006 * 15 14 4 17 17 C 1.52995 * 117.49549 * 116.39063 * 15 14 4 18 18 C 1.52998 * 60.00116 * 107.48731 * 17 15 14 19 19 H 1.09003 * 117.49943 * 252.50640 * 18 17 15 20 20 C 1.50704 * 117.50101 * 107.48356 * 18 17 15 21 21 C 1.38237 * 119.99827 * 351.10603 * 20 18 17 22 22 C 1.38236 * 119.99618 * 179.80723 * 21 20 18 23 23 C 1.38237 * 119.99995 * 0.40216 * 22 21 20 24 24 C 1.38234 * 119.99858 * 359.85219 * 23 22 21 25 25 C 1.38229 * 120.00401 * 359.95852 * 24 23 22 26 26 H 1.07996 * 119.99527 * 359.72387 * 1 2 3 27 27 H 1.08001 * 120.00007 * 179.72702 * 1 2 3 28 28 H 1.08005 * 119.99403 * 180.27627 * 2 1 3 29 29 H 1.09002 * 109.47246 * 245.28052 * 3 2 1 30 30 H 1.09009 * 109.46866 * 5.27442 * 3 2 1 31 31 H 1.09006 * 109.46996 * 284.57631 * 5 4 3 32 32 H 1.08996 * 109.47045 * 44.57793 * 5 4 3 33 33 H 0.97001 * 120.00283 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.46810 * 53.95368 * 14 4 3 35 35 H 1.08995 * 109.47077 * 173.95536 * 14 4 3 36 36 H 1.08999 * 117.49592 * 214.97826 * 17 15 14 37 37 H 1.09000 * 117.50602 * 359.97438 * 17 15 14 38 38 H 1.07991 * 120.00040 * 359.97438 * 21 20 18 39 39 H 1.08004 * 119.99725 * 180.23102 * 22 21 20 40 40 H 1.07999 * 119.99631 * 179.83229 * 23 22 21 41 41 H 1.08006 * 119.99612 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.00119 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0011 1.3291 1.1307 5 6 2.2860 1.4849 2.4043 6 6 3.2064 1.1310 3.5438 7 1 4.2264 0.8380 3.3430 8 6 2.7464 1.1809 4.8426 9 7 3.5496 0.8715 5.8370 10 14 0.9824 1.6879 5.1898 11 1 0.1125 0.4845 5.1908 12 1 0.9102 2.3521 6.5161 13 1 0.5222 2.6305 4.1386 14 6 4.0064 2.3864 0.9586 15 6 4.8938 2.0557 -0.2432 16 1 5.0210 0.9943 -0.4556 17 6 4.8560 3.0151 -1.4344 18 6 6.0818 2.9794 -0.5195 19 1 6.2312 3.8227 0.1549 20 6 7.3389 2.3520 -1.0645 21 6 7.3071 1.6744 -2.2690 22 6 8.4611 1.1023 -2.7709 23 6 9.6451 1.2007 -2.0642 24 6 9.6757 1.8737 -0.8571 25 6 8.5226 2.4492 -0.3572 26 1 -0.5399 0.9353 0.0045 27 1 -0.5400 -0.9353 -0.0045 28 1 1.8500 -0.9354 -0.0045 29 1 2.6175 1.4047 -0.9335 30 1 1.3590 2.1314 0.0945 31 1 1.9557 2.5182 2.5115 32 1 1.4198 0.8233 2.4179 33 1 3.2261 0.9070 6.7508 34 1 3.5057 3.3396 0.7891 35 1 4.6207 2.4532 1.8564 36 1 4.9589 2.5848 -2.4306 37 1 4.1987 3.8816 -1.3622 38 1 6.3813 1.5944 -2.8192 39 1 8.4371 0.5761 -3.7137 40 1 10.5461 0.7514 -2.4550 41 1 10.6007 1.9502 -0.3048 42 1 8.5465 2.9747 0.5861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430106622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:31 Heat of formation + Delta-G solvation = 73.705913 kcal Electronic energy + Delta-G solvation = -19982.717582 eV Core-core repulsion = 17121.895993 eV Total energy + Delta-G solvation = -2860.821589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.65671 -37.85409 -36.10680 -33.17163 -32.19339 -30.93230 -30.55496 -28.08117 -26.55783 -23.93052 -23.57269 -22.37208 -21.02857 -20.18590 -19.84480 -19.27116 -17.15848 -16.77933 -15.48971 -15.33888 -14.86912 -14.69604 -14.30855 -14.02789 -13.70138 -13.53422 -13.29133 -13.02347 -12.83642 -12.38031 -12.19839 -12.02835 -11.73824 -11.38029 -11.22404 -10.96453 -10.88608 -10.68192 -10.55484 -10.49975 -10.16395 -9.90737 -9.71322 -9.26711 -8.93132 -8.90013 -8.54906 -8.41904 -7.39431 -6.03165 -3.99861 1.35720 1.42332 2.66828 3.29568 3.36759 3.39003 3.66466 4.18332 4.43644 4.54352 4.84603 4.87795 4.98206 5.05364 5.12486 5.26767 5.29202 5.30781 5.46697 5.50428 5.58357 5.62336 5.73160 5.85489 5.92922 6.02398 6.05735 6.06668 6.14207 6.17968 6.26454 6.43849 6.50343 6.52713 6.67788 6.72914 6.89079 6.95348 7.00274 7.02541 7.12167 7.64205 7.92816 8.05350 8.68022 9.06729 9.59082 11.10047 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.004437 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.548282 B = 6308.462992 C = 7365.870351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.121 4.121 3 C 0.075 3.925 4 N -0.521 5.521 5 C 0.162 3.838 6 C -0.506 4.506 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.901 5.901 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.269 1.269 14 C 0.092 3.908 15 C -0.114 4.114 16 H 0.112 0.888 17 C -0.181 4.181 18 C -0.121 4.121 19 H 0.112 0.888 20 C -0.039 4.039 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.132 4.132 24 C -0.118 4.118 25 C -0.113 4.113 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.026 0.974 31 H -0.013 1.013 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.023 0.977 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 3.173 -17.012 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.139 4.139 3 C -0.053 4.053 4 N -0.244 5.244 5 C 0.036 3.964 6 C -0.545 4.545 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.540 5.540 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.194 1.194 14 C -0.036 4.036 15 C -0.133 4.133 16 H 0.131 0.869 17 C -0.218 4.218 18 C -0.140 4.140 19 H 0.130 0.870 20 C -0.039 4.039 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.150 4.150 24 C -0.136 4.136 25 C -0.131 4.131 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.004 0.996 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.805 2.718 -16.783 17.965 hybrid contribution -1.364 0.943 0.394 1.704 sum 4.441 3.661 -16.389 17.370 Atomic orbital electron populations 1.23714 0.96048 1.01181 1.04069 1.22946 0.95359 0.99024 0.96602 1.21263 0.94493 0.93957 0.95619 1.61888 1.14439 1.46043 1.02064 1.20190 0.94709 0.94485 0.87005 1.21043 0.99625 1.45086 0.88722 0.90088 1.24879 0.97104 0.95055 0.96204 1.69893 1.35589 1.49296 0.99211 0.86911 0.86119 0.79317 0.77726 1.20126 1.21239 1.19360 1.21613 0.93572 0.91494 0.96955 1.22583 0.97263 0.97115 0.96337 0.86949 1.23257 1.00273 1.02679 0.95585 1.21154 0.87318 1.02168 1.03317 0.86986 1.19209 0.93661 0.96888 0.94119 1.21060 0.98408 0.98512 0.96086 1.21090 0.92934 0.99866 0.99859 1.21096 0.97964 1.00241 0.95716 1.21124 0.98200 0.98109 0.96163 1.21031 0.92197 1.00195 0.99723 0.89260 0.88834 0.87070 0.90599 0.95574 0.99554 0.95420 0.92724 0.95900 0.88789 0.88840 0.88775 0.86046 0.86357 0.86443 0.86183 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.18 14.32 29.01 0.42 -2.76 16 2 C -0.12 -1.99 8.77 -36.03 -0.32 -2.30 16 3 C 0.07 1.27 5.29 -4.98 -0.03 1.25 16 4 N -0.52 -10.68 4.40 -237.52 -1.05 -11.73 16 5 C 0.16 3.94 3.64 -4.98 -0.02 3.92 16 6 C -0.51 -14.38 9.02 -34.44 -0.31 -14.69 16 7 H 0.08 2.51 7.75 -52.49 -0.41 2.10 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 10 Si 0.87 21.69 27.45 -169.99 -4.67 17.03 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.47 6.57 56.52 0.37 -6.10 16 14 C 0.09 1.69 5.09 -3.82 -0.02 1.67 16 15 C -0.11 -1.72 4.30 -90.62 -0.39 -2.11 16 16 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 17 C -0.18 -2.21 9.33 -26.73 -0.25 -2.46 16 18 C -0.12 -1.61 5.76 -91.77 -0.53 -2.14 16 19 H 0.11 1.47 8.14 -51.93 -0.42 1.04 16 20 C -0.04 -0.51 5.61 -104.62 -0.59 -1.10 16 21 C -0.12 -1.48 9.29 -39.58 -0.37 -1.85 16 22 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 23 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 24 C -0.12 -1.34 10.05 -39.59 -0.40 -1.73 16 25 C -0.11 -1.44 9.74 -39.59 -0.39 -1.82 16 26 H 0.09 1.28 7.84 -52.49 -0.41 0.87 16 27 H 0.09 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 29 H 0.08 1.14 6.74 -51.93 -0.35 0.79 16 30 H 0.03 0.45 7.70 -51.92 -0.40 0.05 16 31 H -0.01 -0.33 7.19 -51.93 -0.37 -0.70 16 32 H 0.03 0.69 6.55 -51.93 -0.34 0.35 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.02 0.40 7.85 -51.93 -0.41 0.00 16 35 H 0.09 1.98 7.04 -51.93 -0.37 1.61 16 36 H 0.09 1.01 6.18 -51.93 -0.32 0.69 16 37 H 0.09 1.10 8.03 -51.93 -0.42 0.68 16 38 H 0.12 1.31 6.03 -52.49 -0.32 0.99 16 39 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -30.60 344.23 -10.48 -41.08 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.66 Total: 3.07 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -4.07 Total: -27.74 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: -0.27 Total: -38.63 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.60 -10.48 -41.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430106622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.789 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds