Wall clock time and date at job start Mon Mar 30 2020 02:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30989 * 1 3 3 C 1.50701 * 119.99942 * 2 1 4 4 N 1.46899 * 109.47165 * 124.43767 * 3 2 1 5 5 C 1.46897 * 111.00047 * 198.81717 * 4 3 2 6 6 C 1.50703 * 109.47021 * 66.04565 * 5 4 3 7 7 H 1.07995 * 120.00128 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99934 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99848 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99940 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47127 * 59.99749 * 10 8 6 12 12 H 1.48498 * 109.46814 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.46841 * 299.99915 * 10 8 6 14 14 C 1.46903 * 111.00266 * 74.86558 * 4 3 2 15 15 C 1.52996 * 109.47080 * 195.54113 * 14 4 3 16 16 H 1.09002 * 115.55608 * 28.13681 * 15 14 4 17 17 C 1.53006 * 117.49748 * 242.43038 * 15 14 4 18 18 C 1.52997 * 59.99993 * 252.50809 * 17 15 14 19 19 H 1.08998 * 117.50342 * 252.50601 * 18 17 15 20 20 C 1.50706 * 117.51994 * 107.47916 * 18 17 15 21 21 C 1.38243 * 119.99473 * 351.09804 * 20 18 17 22 22 C 1.38236 * 119.99595 * 179.74683 * 21 20 18 23 23 C 1.38234 * 120.00217 * 0.54609 * 22 21 20 24 24 C 1.38243 * 119.99728 * 359.70797 * 23 22 21 25 25 C 1.38227 * 120.00016 * 0.02562 * 24 23 22 26 26 H 1.07997 * 120.00177 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00186 * 180.02562 * 1 2 3 28 28 H 1.08007 * 120.00307 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47133 * 4.43416 * 3 2 1 30 30 H 1.09005 * 109.47041 * 244.43424 * 3 2 1 31 31 H 1.09003 * 109.47309 * 186.04614 * 5 4 3 32 32 H 1.08998 * 109.47117 * 306.04302 * 5 4 3 33 33 H 0.96992 * 119.99682 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.46547 * 315.53750 * 14 4 3 35 35 H 1.09001 * 109.47438 * 75.53654 * 14 4 3 36 36 H 1.09000 * 117.49481 * 359.97438 * 17 15 14 37 37 H 1.08994 * 117.50142 * 145.02128 * 17 15 14 38 38 H 1.07994 * 120.00307 * 359.97438 * 21 20 18 39 39 H 1.08005 * 119.99684 * 180.27704 * 22 21 20 40 40 H 1.07997 * 120.00008 * 179.72751 * 23 22 21 41 41 H 1.07994 * 119.99448 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.00363 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9865 1.3376 1.1422 5 6 3.4014 2.7139 1.4449 6 6 2.2106 3.5037 1.9237 7 1 1.2424 3.0307 1.9956 8 6 2.3570 4.8305 2.2690 9 7 3.5358 5.4069 2.1800 10 14 0.8808 5.8097 2.8618 11 1 0.3281 5.1789 4.0873 12 1 1.3000 7.2013 3.1667 13 1 -0.1593 5.8275 1.8021 14 6 4.1526 0.4772 0.9014 15 6 4.8823 0.2257 2.2224 16 1 4.2608 0.2612 3.1171 17 6 6.3219 0.7303 2.3414 18 6 6.0451 -0.7686 2.2091 19 1 6.1887 -1.3871 3.0950 20 6 6.3835 -1.4259 0.8958 21 6 6.7479 -0.6525 -0.1905 22 6 7.0634 -1.2557 -1.3936 23 6 7.0036 -2.6315 -1.5137 24 6 6.6341 -3.4046 -0.4288 25 6 6.3239 -2.8017 0.7758 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3578 2.1320 0.0794 30 1 2.6291 1.3980 -0.9271 31 1 4.1650 2.7005 2.2226 32 1 3.8069 3.1772 0.5455 33 1 3.6388 6.3402 2.4233 34 1 3.8224 -0.4732 0.4821 35 1 4.8281 0.9683 0.2009 36 1 6.7491 1.2410 1.4784 37 1 6.6476 1.0979 3.3145 38 1 6.7897 0.4227 -0.0982 39 1 7.3524 -0.6517 -2.2411 40 1 7.2458 -3.1024 -2.4549 41 1 6.5869 -4.4794 -0.5228 42 1 6.0349 -3.4056 1.6233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430106623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:34 Heat of formation + Delta-G solvation = 71.899002 kcal Electronic energy + Delta-G solvation = -20416.371591 eV Core-core repulsion = 17555.471649 eV Total energy + Delta-G solvation = -2860.899942 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.74306 -37.58909 -35.98388 -33.10142 -32.11384 -30.91178 -30.36747 -27.66427 -26.33620 -23.81144 -23.67238 -22.52248 -21.08878 -20.43069 -19.52665 -19.01556 -16.72549 -16.36003 -15.62167 -15.26076 -14.87502 -14.66009 -14.37180 -13.87974 -13.71961 -13.49730 -13.33282 -12.79610 -12.56422 -12.22052 -12.00168 -11.86049 -11.59150 -11.29546 -11.01841 -10.88669 -10.77108 -10.68017 -10.60714 -10.27991 -10.18345 -9.90385 -9.49093 -9.15850 -8.87729 -8.85626 -8.42766 -8.36845 -7.19668 -6.00496 -4.01322 1.38992 1.44999 2.78182 3.34498 3.38549 3.41777 3.71416 4.31598 4.44594 4.72543 4.87384 4.92443 5.01961 5.16124 5.21460 5.34532 5.36153 5.41556 5.52949 5.63312 5.67152 5.74061 5.92091 5.98167 6.03715 6.12316 6.16392 6.18529 6.25755 6.31515 6.35469 6.53160 6.55649 6.59469 6.73533 6.76271 7.05590 7.08762 7.30838 7.37653 7.38066 7.83738 8.13498 8.24628 8.59035 9.06608 9.62628 11.10209 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.004710 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.866023 B = 5943.660764 C = 6689.903352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C 0.083 3.917 4 N -0.531 5.531 5 C 0.194 3.806 6 C -0.508 4.508 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.087 3.913 15 C -0.109 4.109 16 H 0.116 0.884 17 C -0.169 4.169 18 C -0.131 4.131 19 H 0.109 0.891 20 C -0.036 4.036 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.132 4.132 24 C -0.121 4.121 25 C -0.118 4.118 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.027 0.973 31 H 0.037 0.963 32 H -0.013 1.013 33 H 0.261 0.739 34 H 0.062 0.938 35 H 0.027 0.973 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.604 -14.845 -4.874 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.147 4.147 3 C -0.045 4.045 4 N -0.255 5.255 5 C 0.069 3.931 6 C -0.546 4.546 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.041 4.041 15 C -0.128 4.128 16 H 0.134 0.866 17 C -0.206 4.206 18 C -0.150 4.150 19 H 0.127 0.873 20 C -0.036 4.036 21 C -0.136 4.136 22 C -0.136 4.136 23 C -0.150 4.150 24 C -0.139 4.139 25 C -0.136 4.136 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.005 0.995 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.455 -14.825 -4.434 16.408 hybrid contribution -0.245 0.904 -0.314 0.988 sum 5.210 -13.921 -4.748 15.604 Atomic orbital electron populations 1.23680 0.95956 1.01132 1.03345 1.22990 0.95850 0.98500 0.97381 1.21166 0.96164 0.95448 0.91677 1.62092 1.13631 1.13297 1.36469 1.19745 0.96573 0.81397 0.95382 1.21157 0.95417 0.94603 1.43469 0.91965 1.24966 0.95869 0.97724 0.95902 1.69950 1.22475 1.12436 1.48937 0.86606 0.82842 0.78887 0.79352 1.20183 1.21401 1.20327 1.21618 0.92040 0.96999 0.93455 1.22404 0.89726 0.99780 1.00865 0.86568 1.23173 1.00024 0.94123 1.03263 1.21243 1.05866 0.92274 0.95623 0.87300 1.19190 0.97287 0.93165 0.93987 1.21191 0.99353 1.00294 0.92740 1.21126 1.00052 0.94858 0.97533 1.21080 1.01329 0.94041 0.98584 1.21072 1.00040 0.99544 0.93242 1.20942 1.00802 0.94090 0.97805 0.88632 0.89359 0.88501 0.89048 0.95546 0.94505 0.99480 0.92951 0.91945 0.95534 0.88708 0.88545 0.85764 0.86295 0.86510 0.86398 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.15 14.32 29.02 0.42 -2.73 16 2 C -0.13 -2.18 9.32 -36.02 -0.34 -2.52 16 3 C 0.08 1.65 5.26 -4.98 -0.03 1.63 16 4 N -0.53 -11.41 4.38 -237.51 -1.04 -12.45 16 5 C 0.19 4.98 4.57 -4.98 -0.02 4.96 16 6 C -0.51 -14.16 8.25 -34.44 -0.28 -14.44 16 7 H 0.06 1.73 7.30 -52.49 -0.38 1.35 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 10 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.09 1.59 3.71 -3.82 -0.01 1.57 16 15 C -0.11 -1.83 4.97 -90.62 -0.45 -2.28 16 16 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 17 C -0.17 -2.58 9.52 -26.73 -0.25 -2.84 16 18 C -0.13 -1.82 6.04 -91.77 -0.55 -2.37 16 19 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 20 C -0.04 -0.49 4.94 -104.62 -0.52 -1.01 16 21 C -0.12 -1.60 7.88 -39.58 -0.31 -1.91 16 22 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 23 C -0.13 -1.46 10.05 -39.58 -0.40 -1.85 16 24 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 25 C -0.12 -1.43 9.74 -39.59 -0.39 -1.81 16 26 H 0.10 1.50 7.84 -52.49 -0.41 1.09 16 27 H 0.09 1.17 8.06 -52.49 -0.42 0.74 16 28 H 0.10 1.54 7.22 -52.48 -0.38 1.16 16 29 H 0.09 1.99 6.23 -51.93 -0.32 1.67 16 30 H 0.03 0.51 8.01 -51.93 -0.42 0.10 16 31 H 0.04 1.00 7.25 -51.93 -0.38 0.63 16 32 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.06 1.09 6.63 -51.93 -0.34 0.74 16 35 H 0.03 0.50 6.20 -51.93 -0.32 0.18 16 36 H 0.09 1.46 6.07 -51.93 -0.32 1.15 16 37 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.12 1.74 5.20 -52.49 -0.27 1.46 16 39 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -29.48 341.73 -10.69 -40.17 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.48 Total: 3.94 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -4.03 Total: -27.64 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.30 Total: -38.22 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.48 -10.69 -40.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430106623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.067 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds