Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30989 * 1 3 3 C 1.50701 * 119.99942 * 2 1 4 4 N 1.46899 * 109.47165 * 124.43767 * 3 2 1 5 5 C 1.46897 * 111.00047 * 198.81717 * 4 3 2 6 6 C 1.50703 * 109.47021 * 66.04565 * 5 4 3 7 7 H 1.07995 * 120.00128 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99934 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99848 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99940 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47127 * 59.99749 * 10 8 6 12 12 H 1.48498 * 109.46814 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.46841 * 299.99915 * 10 8 6 14 14 C 1.46903 * 111.00266 * 74.86558 * 4 3 2 15 15 C 1.52996 * 109.47080 * 195.54113 * 14 4 3 16 16 H 1.09002 * 115.55608 * 28.13681 * 15 14 4 17 17 C 1.53006 * 117.49748 * 242.43038 * 15 14 4 18 18 C 1.52997 * 59.99993 * 252.50809 * 17 15 14 19 19 H 1.08998 * 117.50342 * 252.50601 * 18 17 15 20 20 C 1.50706 * 117.51994 * 107.47916 * 18 17 15 21 21 C 1.38243 * 119.99473 * 351.09804 * 20 18 17 22 22 C 1.38236 * 119.99595 * 179.74683 * 21 20 18 23 23 C 1.38234 * 120.00217 * 0.54609 * 22 21 20 24 24 C 1.38243 * 119.99728 * 359.70797 * 23 22 21 25 25 C 1.38227 * 120.00016 * 0.02562 * 24 23 22 26 26 H 1.07997 * 120.00177 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00186 * 180.02562 * 1 2 3 28 28 H 1.08007 * 120.00307 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47133 * 4.43416 * 3 2 1 30 30 H 1.09005 * 109.47041 * 244.43424 * 3 2 1 31 31 H 1.09003 * 109.47309 * 186.04614 * 5 4 3 32 32 H 1.08998 * 109.47117 * 306.04302 * 5 4 3 33 33 H 0.96992 * 119.99682 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.46547 * 315.53750 * 14 4 3 35 35 H 1.09001 * 109.47438 * 75.53654 * 14 4 3 36 36 H 1.09000 * 117.49481 * 359.97438 * 17 15 14 37 37 H 1.08994 * 117.50142 * 145.02128 * 17 15 14 38 38 H 1.07994 * 120.00307 * 359.97438 * 21 20 18 39 39 H 1.08005 * 119.99684 * 180.27704 * 22 21 20 40 40 H 1.07997 * 120.00008 * 179.72751 * 23 22 21 41 41 H 1.07994 * 119.99448 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.00363 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9865 1.3376 1.1422 5 6 3.4014 2.7139 1.4449 6 6 2.2106 3.5037 1.9237 7 1 1.2424 3.0307 1.9956 8 6 2.3570 4.8305 2.2690 9 7 3.5358 5.4069 2.1800 10 14 0.8808 5.8097 2.8618 11 1 0.3281 5.1789 4.0873 12 1 1.3000 7.2013 3.1667 13 1 -0.1593 5.8275 1.8021 14 6 4.1526 0.4772 0.9014 15 6 4.8823 0.2257 2.2224 16 1 4.2608 0.2612 3.1171 17 6 6.3219 0.7303 2.3414 18 6 6.0451 -0.7686 2.2091 19 1 6.1887 -1.3871 3.0950 20 6 6.3835 -1.4259 0.8958 21 6 6.7479 -0.6525 -0.1905 22 6 7.0634 -1.2557 -1.3936 23 6 7.0036 -2.6315 -1.5137 24 6 6.6341 -3.4046 -0.4288 25 6 6.3239 -2.8017 0.7758 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3578 2.1320 0.0794 30 1 2.6291 1.3980 -0.9271 31 1 4.1650 2.7005 2.2226 32 1 3.8069 3.1772 0.5455 33 1 3.6388 6.3402 2.4233 34 1 3.8224 -0.4732 0.4821 35 1 4.8281 0.9683 0.2009 36 1 6.7491 1.2410 1.4784 37 1 6.6476 1.0979 3.3145 38 1 6.7897 0.4227 -0.0982 39 1 7.3524 -0.6517 -2.2411 40 1 7.2458 -3.1024 -2.4549 41 1 6.5869 -4.4794 -0.5228 42 1 6.0349 -3.4056 1.6233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430106623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = 57.278723 kcal Electronic energy + Delta-G solvation = -20417.005574 eV Core-core repulsion = 17555.471649 eV Total energy + Delta-G solvation = -2861.533925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.82117 -38.96519 -37.35704 -34.96754 -33.82503 -31.83520 -31.35528 -29.59558 -27.88123 -25.70034 -24.72504 -23.46372 -22.80025 -21.68680 -20.75117 -20.40553 -18.51403 -17.75232 -16.87583 -16.74986 -16.41721 -15.84655 -15.63925 -15.55158 -14.96025 -14.90250 -14.30113 -14.16914 -14.06067 -13.74358 -13.55149 -13.30660 -13.04773 -12.81588 -12.66794 -12.53252 -12.31888 -11.99618 -11.88124 -11.83666 -11.62708 -11.49035 -11.15185 -10.80488 -10.57316 -10.24364 -9.78837 -9.40995 -8.97534 -8.18645 -6.28071 0.44213 0.53406 1.40511 1.43423 1.46494 1.51418 2.40926 2.68005 3.13757 3.18892 3.34907 3.65220 3.89057 3.97847 4.07115 4.16570 4.20767 4.28671 4.35697 4.38242 4.48895 4.52657 4.64010 4.70300 4.75376 4.79706 4.91761 4.95973 5.04054 5.06422 5.18819 5.21666 5.25242 5.30721 5.37669 5.62898 5.65716 5.67139 5.75856 5.78227 6.00175 6.08794 6.15742 6.36698 6.66512 6.88008 7.41131 8.92093 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.004710 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.866023 B = 5943.660764 C = 6689.903352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C 0.084 3.916 4 N -0.535 5.535 5 C 0.214 3.786 6 C -0.523 4.523 7 H 0.060 0.940 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.965 3.035 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.099 3.901 15 C -0.132 4.132 16 H 0.101 0.899 17 C -0.179 4.179 18 C -0.097 4.097 19 H 0.131 0.869 20 C -0.058 4.058 21 C -0.136 4.136 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.121 4.121 25 C -0.121 4.121 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.015 0.985 32 H -0.047 1.047 33 H 0.264 0.736 34 H 0.075 0.925 35 H 0.015 0.985 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.703 -17.260 -5.090 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.164 4.164 3 C -0.043 4.043 4 N -0.259 5.259 5 C 0.087 3.913 6 C -0.562 4.562 7 H 0.078 0.922 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.193 1.193 14 C -0.029 4.029 15 C -0.151 4.151 16 H 0.119 0.881 17 C -0.215 4.215 18 C -0.115 4.115 19 H 0.149 0.851 20 C -0.058 4.058 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.139 4.139 26 H 0.107 0.893 27 H 0.139 0.861 28 H 0.131 0.869 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.033 0.967 32 H -0.029 1.029 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.033 0.967 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.148 0.852 40 H 0.161 0.839 41 H 0.166 0.834 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.551 -17.262 -4.659 18.450 hybrid contribution 0.057 1.598 -0.326 1.632 sum 4.608 -15.664 -4.986 17.072 Atomic orbital electron populations 1.23917 0.95408 1.02393 1.00381 1.22829 0.96322 0.97206 1.00023 1.21128 0.95559 0.96715 0.90923 1.62070 1.15088 1.11036 1.37724 1.19339 0.95306 0.83599 0.93012 1.21441 0.95800 0.95321 1.43595 0.92171 1.25854 0.98829 0.98799 0.95849 1.70082 1.24665 1.12841 1.49746 0.85510 0.79207 0.77282 0.79083 1.19374 1.20824 1.19322 1.21548 0.90715 0.96391 0.94264 1.22260 0.90253 1.03259 0.99336 0.88088 1.23186 0.99028 0.96178 1.03150 1.21269 1.01989 0.91296 0.96981 0.85146 1.19245 0.98925 0.94108 0.93526 1.21195 1.00682 0.99669 0.93873 1.21354 1.00129 0.95937 0.97314 1.21447 1.00007 0.93469 0.99861 1.21457 0.98720 1.01116 0.92540 1.21210 1.00223 0.93394 0.99085 0.89264 0.86103 0.86911 0.91588 0.95827 0.96732 1.02909 0.92774 0.90691 0.96657 0.89605 0.88132 0.87529 0.85184 0.83854 0.83447 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.28 14.32 67.79 0.97 -4.31 16 2 C -0.15 -4.77 9.32 25.66 0.24 -4.53 16 3 C 0.08 3.44 5.26 85.56 0.45 3.89 16 4 N -0.54 -23.91 4.38 -905.36 -3.97 -27.87 16 5 C 0.21 11.61 4.57 85.56 0.39 12.00 16 6 C -0.52 -30.12 8.25 25.60 0.21 -29.91 16 7 H 0.06 3.42 7.30 -2.91 -0.02 3.40 16 8 C 0.00 0.27 5.46 84.66 0.46 0.74 16 9 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 10 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 14 C 0.10 3.72 3.71 86.30 0.32 4.04 16 15 C -0.13 -4.57 4.97 -10.79 -0.05 -4.63 16 16 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 17 C -0.18 -5.71 9.52 30.60 0.29 -5.42 16 18 C -0.10 -2.65 6.04 -11.54 -0.07 -2.72 16 19 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 20 C -0.06 -1.51 4.94 -19.86 -0.10 -1.61 16 21 C -0.14 -3.72 7.88 22.27 0.18 -3.55 16 22 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 23 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 24 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 25 C -0.12 -2.61 9.74 22.27 0.22 -2.39 16 26 H 0.09 2.69 7.84 -2.91 -0.02 2.66 16 27 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 28 H 0.11 3.35 7.22 -2.91 -0.02 3.33 16 29 H 0.07 2.99 6.23 -2.39 -0.01 2.97 16 30 H 0.02 0.96 8.01 -2.38 -0.02 0.94 16 31 H 0.01 0.85 7.25 -2.39 -0.02 0.83 16 32 H -0.05 -2.80 8.12 -2.39 -0.02 -2.82 16 33 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.07 2.60 6.63 -2.38 -0.02 2.59 16 35 H 0.02 0.61 6.20 -2.39 -0.01 0.60 16 36 H 0.09 2.87 6.07 -2.39 -0.01 2.86 16 37 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.11 3.21 5.20 -2.91 -0.02 3.19 16 39 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -65.15 341.73 3.50 -61.64 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.98 Total: 21.31 kcal Atomic # 6 Polarization: -49.65 SS G_CDS: 4.18 Total: -45.48 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -3.68 Total: -84.27 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -65.15 3.50 -61.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430106623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.923 kcal (2) G-P(sol) polarization free energy of solvation -65.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds