Wall clock time and date at job start Mon Mar 30 2020 01:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38253 * 120.03683 * 2 1 4 4 C 1.38105 * 119.93896 * 179.97438 * 3 2 1 5 5 C 1.38494 * 120.21524 * 0.02562 * 4 3 2 6 6 C 1.38389 * 119.82092 * 0.08681 * 5 4 3 7 7 C 1.38103 * 120.03128 * 179.97438 * 2 1 3 8 8 C 1.51376 * 109.66484 * 180.02562 * 6 5 4 9 9 H 1.09003 * 110.30287 * 136.03674 * 8 6 5 10 10 N 1.46894 * 110.30271 * 258.09719 * 8 6 5 11 11 C 1.46906 * 111.00061 * 199.21688 * 10 8 6 12 12 C 1.52991 * 109.47165 * 185.08178 * 11 10 8 13 13 C 1.50702 * 115.55338 * 65.14531 * 12 11 10 14 14 H 1.07997 * 119.99947 * 264.83341 * 13 12 11 15 15 C 1.37881 * 119.99857 * 84.83055 * 13 12 11 16 16 N 1.31509 * 119.99862 * 184.66947 * 15 13 12 17 17 Si 1.86799 * 120.00027 * 4.66801 * 15 13 12 18 18 H 1.48492 * 109.46988 * 94.51930 * 17 15 13 19 19 H 1.48505 * 109.47107 * 214.51809 * 17 15 13 20 20 H 1.48500 * 109.47172 * 334.51574 * 17 15 13 21 21 C 1.53001 * 117.50072 * 279.46933 * 12 11 10 22 22 C 1.53008 * 117.49839 * 210.81317 * 12 11 10 23 23 C 1.54348 * 105.25197 * 17.06844 * 8 6 5 24 24 C 1.51365 * 130.39289 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.47275 * 89.99744 * 1 2 3 26 26 H 1.09003 * 109.46979 * 210.00112 * 1 2 3 27 27 H 1.08997 * 109.46946 * 330.00218 * 1 2 3 28 28 H 1.07999 * 120.03158 * 359.95417 * 3 2 1 29 29 H 1.07992 * 119.89168 * 180.02562 * 4 3 2 30 30 H 1.08001 * 119.89497 * 0.02562 * 7 2 1 31 31 H 1.00901 * 111.00479 * 323.17192 * 10 8 6 32 32 H 1.09000 * 109.47180 * 305.08360 * 11 10 8 33 33 H 1.09005 * 109.46651 * 65.07910 * 11 10 8 34 34 H 0.96993 * 120.00351 * 179.97438 * 16 15 13 35 35 H 1.09004 * 117.50016 * 0.02562 * 21 12 11 36 36 H 1.09003 * 117.49816 * 145.02329 * 21 12 11 37 37 H 1.09001 * 117.50112 * 214.98503 * 22 12 11 38 38 H 1.09004 * 117.49868 * 359.97438 * 22 12 11 39 39 H 1.09006 * 110.82481 * 91.92954 * 23 8 6 40 40 H 1.09009 * 110.82070 * 215.27685 * 23 8 6 41 41 H 1.08998 * 110.30779 * 43.88811 * 24 5 4 42 42 H 1.09001 * 110.38690 * 281.77820 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1969 0.0000 4 6 3.5801 1.1945 0.0005 5 6 4.2750 -0.0035 0.0005 6 6 3.5818 -1.2012 -0.0018 7 6 2.1982 -1.1956 0.0005 8 6 4.5603 -2.3562 -0.0007 9 1 4.2419 -3.1209 0.7078 10 7 4.6758 -2.9277 -1.3489 11 6 5.2349 -4.2853 -1.2991 12 6 5.4580 -4.7975 -2.7234 13 6 6.4921 -4.0525 -3.5276 14 1 6.1890 -3.2575 -4.1928 15 6 7.8252 -4.3859 -3.4141 16 7 8.7362 -3.6772 -4.0445 17 14 8.3373 -5.8441 -2.3649 18 1 8.4634 -7.0503 -3.2217 19 1 9.6438 -5.5558 -1.7205 20 1 7.3118 -6.0852 -1.3183 21 6 4.2448 -5.3517 -3.4730 22 6 5.3288 -6.3035 -2.9609 23 6 5.9080 -1.7461 0.4397 24 6 5.7644 -0.2735 0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6601 2.1328 -0.0007 29 1 4.1199 2.1298 0.0010 30 1 1.6569 -2.1302 0.0005 31 1 3.7847 -2.9208 -1.8222 32 1 6.1857 -4.2673 -0.7664 33 1 4.5401 -4.9455 -0.7801 34 1 9.6740 -3.9114 -3.9643 35 1 3.2876 -5.3510 -2.9516 36 1 4.1948 -5.1778 -4.5479 37 1 5.9915 -6.7553 -3.6990 38 1 5.0852 -6.9293 -2.1023 39 1 6.0311 -1.8176 1.5204 40 1 6.7385 -2.2283 -0.0760 41 1 6.2680 0.3839 0.7092 42 1 6.1752 -0.1360 -0.9997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430727608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:22 Heat of formation + Delta-G solvation = 29.332953 kcal Electronic energy + Delta-G solvation = -20703.046929 eV Core-core repulsion = 17840.301184 eV Total energy + Delta-G solvation = -2862.745745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19058 -39.04818 -37.40275 -34.60574 -34.09322 -32.19430 -31.26110 -28.43333 -27.63028 -26.76471 -25.12679 -23.37914 -23.26734 -21.47728 -20.84518 -20.62919 -18.30241 -17.31499 -16.98281 -16.68118 -16.18299 -15.96168 -15.42444 -15.08417 -14.82520 -14.71697 -14.52145 -14.38303 -13.96274 -13.83357 -13.32161 -13.02151 -12.93613 -12.87681 -12.58172 -12.46317 -12.22088 -12.15904 -12.05803 -11.84486 -11.77475 -11.57421 -11.33211 -10.94674 -10.49610 -10.23215 -9.76774 -9.29656 -9.00418 -8.18885 -6.21234 0.43638 0.49577 1.37227 1.40109 1.52896 2.43373 2.76546 3.12274 3.17990 3.46057 3.59616 3.66706 4.04527 4.11435 4.16961 4.23335 4.25387 4.38457 4.41382 4.49854 4.57270 4.60280 4.65271 4.71266 4.84051 4.85657 4.86529 4.88713 4.94189 5.02575 5.10130 5.12414 5.25332 5.27475 5.38572 5.44423 5.53246 5.56640 5.70645 5.79160 5.81788 6.14887 6.31897 6.44243 6.65146 6.84689 7.44550 8.97955 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023510 B = 0.005148 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.694363 B = 5437.514105 C = 6019.150540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.097 4.097 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.100 4.100 6 C -0.107 4.107 7 C -0.113 4.113 8 C 0.128 3.872 9 H 0.050 0.950 10 N -0.669 5.669 11 C 0.112 3.888 12 C -0.018 4.018 13 C -0.453 4.453 14 H 0.024 0.976 15 C 0.016 3.984 16 N -0.956 5.956 17 Si 0.937 3.063 18 H -0.277 1.277 19 H -0.301 1.301 20 H -0.229 1.229 21 C -0.166 4.166 22 C -0.195 4.195 23 C -0.114 4.114 24 C -0.072 4.072 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.148 0.852 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.338 0.662 32 H 0.050 0.950 33 H 0.028 0.972 34 H 0.261 0.739 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.211 5.429 12.928 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.097 4.097 3 C -0.138 4.138 4 C -0.136 4.136 5 C -0.100 4.100 6 C -0.107 4.107 7 C -0.131 4.131 8 C 0.019 3.981 9 H 0.068 0.932 10 N -0.300 5.300 11 C -0.017 4.017 12 C -0.020 4.020 13 C -0.491 4.491 14 H 0.042 0.958 15 C -0.180 4.180 16 N -0.597 5.597 17 Si 0.762 3.238 18 H -0.203 1.203 19 H -0.229 1.229 20 H -0.152 1.152 21 C -0.203 4.203 22 C -0.233 4.233 23 C -0.152 4.152 24 C -0.109 4.109 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.165 0.835 29 H 0.152 0.848 30 H 0.144 0.856 31 H 0.157 0.843 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.429 5.729 12.776 20.106 hybrid contribution 0.377 -1.019 0.026 1.087 sum -14.052 4.709 12.803 19.584 Atomic orbital electron populations 1.20790 0.88993 1.03706 1.02955 1.20109 0.97502 0.92441 0.99678 1.21241 0.93516 0.98584 1.00475 1.20880 0.94666 0.97110 1.00898 1.20813 0.96078 0.93845 0.99306 1.20617 0.93798 0.95240 1.01050 1.20661 0.92259 0.98740 1.01464 1.20939 0.93425 0.93592 0.90173 0.93208 1.60223 1.31122 1.22277 1.16399 1.21503 0.97539 0.87683 0.95023 1.19349 0.97121 0.91753 0.93727 1.20250 0.90340 1.16145 1.22371 0.95778 1.25747 0.96409 0.99161 0.96674 1.70070 1.01281 1.41875 1.46516 0.85921 0.77504 0.79745 0.80608 1.20335 1.22901 1.15182 1.22824 0.93181 1.04629 0.99705 1.23028 1.03443 0.93782 1.03062 1.22320 0.96848 0.95409 1.00592 1.20902 0.91957 0.96623 1.01439 0.90686 0.90971 0.90080 0.83462 0.84782 0.85627 0.84342 0.93155 0.95360 0.93057 0.88057 0.90806 0.90988 0.88229 0.89524 0.92214 0.89492 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.01 71.24 0.71 -0.87 16 2 C -0.10 -2.11 5.88 -19.89 -0.12 -2.22 16 3 C -0.12 -2.56 9.70 22.24 0.22 -2.35 16 4 C -0.12 -2.90 10.04 22.30 0.22 -2.68 16 5 C -0.10 -2.93 6.14 -19.56 -0.12 -3.05 16 6 C -0.11 -3.15 5.51 -19.58 -0.11 -3.26 16 7 C -0.11 -2.85 9.69 22.27 0.22 -2.64 16 8 C 0.13 4.09 3.16 44.84 0.14 4.23 16 9 H 0.05 1.49 7.95 -2.39 -0.02 1.47 16 10 N -0.67 -25.35 6.17 -491.96 -3.04 -28.39 16 11 C 0.11 4.43 4.90 86.30 0.42 4.85 16 12 C -0.02 -0.83 0.97 -52.93 -0.05 -0.88 16 13 C -0.45 -26.00 9.33 25.60 0.24 -25.77 16 14 H 0.02 1.59 8.06 -2.91 -0.02 1.56 16 15 C 0.02 0.92 5.47 84.66 0.46 1.39 16 16 N -0.96 -61.24 13.96 21.45 0.30 -60.95 16 17 Si 0.94 45.03 24.94 68.60 1.71 46.75 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 20 H -0.23 -9.84 5.69 99.48 0.57 -9.27 16 21 C -0.17 -6.40 9.96 30.62 0.30 -6.09 16 22 C -0.20 -7.79 7.31 30.62 0.22 -7.57 16 23 C -0.11 -3.64 6.62 31.51 0.21 -3.43 16 24 C -0.07 -2.22 6.77 30.51 0.21 -2.01 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 27 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 28 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 29 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 30 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 31 H 0.34 12.25 8.53 -89.69 -0.76 11.49 16 32 H 0.05 2.16 6.36 -2.39 -0.02 2.14 16 33 H 0.03 0.98 8.09 -2.38 -0.02 0.96 16 34 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 35 H 0.10 3.22 8.14 -2.38 -0.02 3.20 16 36 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.07 3.08 7.13 -2.39 -0.02 3.06 16 38 H 0.10 3.39 8.14 -2.38 -0.02 3.38 16 39 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.06 2.27 7.44 -2.38 -0.02 2.25 16 41 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -68.03 335.67 2.24 -65.79 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.09 Total: 29.14 kcal Atomic # 6 Polarization: -55.53 SS G_CDS: 3.18 Total: -52.34 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -2.74 Total: -89.33 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.71 Total: 46.75 kcal Total: -68.03 2.24 -65.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430727608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.122 kcal (2) G-P(sol) polarization free energy of solvation -68.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds