Wall clock time and date at job start Mon Mar 30 2020 01:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38248 * 120.02827 * 2 1 4 4 C 1.38107 * 119.93723 * 180.02562 * 3 2 1 5 5 C 1.38497 * 120.21025 * 0.03444 * 4 3 2 6 6 C 1.38215 * 119.85345 * 359.96799 * 5 4 3 7 7 C 1.38098 * 120.03454 * 180.29689 * 2 1 3 8 8 C 1.51367 * 109.76066 * 180.02562 * 6 5 4 9 9 H 1.08998 * 110.30360 * 258.25518 * 8 6 5 10 10 N 1.46906 * 110.30329 * 136.10746 * 8 6 5 11 11 C 1.46897 * 111.00010 * 155.00053 * 10 8 6 12 12 C 1.52997 * 109.47352 * 174.70835 * 11 10 8 13 13 C 1.50702 * 115.54711 * 39.57020 * 12 11 10 14 14 H 1.08003 * 120.00083 * 265.27275 * 13 12 11 15 15 C 1.37884 * 119.99897 * 85.28013 * 13 12 11 16 16 N 1.31510 * 119.99825 * 353.36718 * 15 13 12 17 17 Si 1.86797 * 119.99846 * 173.37205 * 15 13 12 18 18 H 1.48498 * 109.47445 * 59.99945 * 17 15 13 19 19 H 1.48500 * 109.47038 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46995 * 299.99505 * 17 15 13 21 21 C 1.53000 * 117.50183 * 253.86776 * 12 11 10 22 22 C 1.52995 * 117.50470 * 185.24246 * 12 11 10 23 23 C 1.54340 * 105.17312 * 17.18253 * 8 6 5 24 24 C 1.51369 * 130.38848 * 179.97438 * 5 4 3 25 25 H 1.09001 * 109.46864 * 89.99945 * 1 2 3 26 26 H 1.09007 * 109.46804 * 209.99290 * 1 2 3 27 27 H 1.08997 * 109.47383 * 329.99877 * 1 2 3 28 28 H 1.08006 * 120.03532 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.90006 * 180.02562 * 4 3 2 30 30 H 1.08003 * 119.89626 * 0.02562 * 7 2 1 31 31 H 1.00903 * 110.99584 * 31.04693 * 10 8 6 32 32 H 1.09006 * 109.47179 * 294.70539 * 11 10 8 33 33 H 1.08995 * 109.47290 * 54.70690 * 11 10 8 34 34 H 0.96999 * 120.00209 * 185.06234 * 16 15 13 35 35 H 1.09007 * 117.49374 * 359.97438 * 21 12 11 36 36 H 1.08998 * 117.50359 * 145.01294 * 21 12 11 37 37 H 1.08999 * 117.50147 * 214.98021 * 22 12 11 38 38 H 1.09004 * 117.49419 * 359.97438 * 22 12 11 39 39 H 1.09004 * 110.82450 * 91.88414 * 23 8 6 40 40 H 1.08998 * 110.82610 * 215.23630 * 23 8 6 41 41 H 1.09000 * 110.30217 * 43.86777 * 24 5 4 42 42 H 1.08998 * 110.38931 * 281.75775 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1969 0.0000 4 6 3.5799 1.1947 -0.0005 5 6 4.2749 -0.0032 -0.0018 6 6 3.5833 -1.1999 -0.0018 7 6 2.1983 -1.1955 -0.0062 8 6 4.5605 -2.3558 -0.0027 9 1 4.6453 -2.7787 -1.0037 10 7 4.1318 -3.3864 0.9524 11 6 4.6610 -4.7045 0.5774 12 6 4.3058 -5.7240 1.6615 13 6 2.9281 -5.5866 2.2566 14 1 2.7869 -5.0231 3.1670 15 6 1.8479 -6.1804 1.6387 16 7 1.9957 -6.7547 0.4649 17 14 0.1746 -6.1689 2.4689 18 1 -0.2618 -4.7658 2.6839 19 1 -0.8114 -6.8665 1.6050 20 1 0.2665 -6.8648 3.7775 21 6 5.4312 -6.1938 2.5854 22 6 4.8750 -7.1367 1.5166 23 6 5.9083 -1.7457 0.4369 24 6 5.7644 -0.2731 -0.0031 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6599 2.1329 0.0004 29 1 4.1198 2.1301 -0.0001 30 1 1.6571 -2.1302 -0.0115 31 1 3.1262 -3.4097 1.0320 32 1 4.2230 -5.0154 -0.3712 33 1 5.7445 -4.6454 0.4752 34 1 1.2229 -7.1075 -0.0032 35 1 6.4248 -5.7768 2.4206 36 1 5.1753 -6.4035 3.6240 37 1 4.2532 -7.9667 1.8519 38 1 5.5022 -7.3399 0.6485 39 1 6.0319 -1.8171 1.5176 40 1 6.7386 -2.2278 -0.0790 41 1 6.2684 0.3843 0.7053 42 1 6.1744 -0.1353 -1.0036 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430727610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:25 Heat of formation + Delta-G solvation = 25.068516 kcal Electronic energy + Delta-G solvation = -20762.829852 eV Core-core repulsion = 17899.899188 eV Total energy + Delta-G solvation = -2862.930665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.16764 -38.75105 -37.30318 -34.69050 -33.97133 -32.14544 -31.24534 -28.30604 -27.38081 -26.78168 -24.92784 -23.35418 -22.86543 -21.47774 -21.06155 -20.67589 -17.96218 -17.08909 -16.72484 -16.54567 -16.34025 -16.05782 -15.58494 -15.24590 -14.71863 -14.52065 -14.29901 -14.15330 -13.90766 -13.47451 -13.16690 -13.04928 -12.94606 -12.86717 -12.80614 -12.44243 -12.35461 -12.25602 -12.00048 -11.97891 -11.73422 -11.50617 -11.22467 -10.77927 -10.40183 -10.00757 -9.71324 -9.31536 -8.95398 -8.08110 -6.17139 0.44162 0.48869 1.39592 1.41287 1.47952 2.42306 2.80074 3.18977 3.41680 3.54419 3.63874 3.71896 4.04241 4.13207 4.19341 4.33657 4.34512 4.39306 4.58319 4.62316 4.64260 4.68308 4.75016 4.78909 4.82624 4.91522 4.97517 5.02527 5.05153 5.11237 5.11589 5.25308 5.26991 5.36549 5.38618 5.52509 5.62926 5.65593 5.70921 5.78097 5.79416 6.14943 6.39364 6.56653 6.67774 6.89804 7.49070 8.99098 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015605 B = 0.006542 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.845576 B = 4279.149882 C = 5746.865431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.122 4.122 4 C -0.107 4.107 5 C -0.107 4.107 6 C -0.108 4.108 7 C -0.127 4.127 8 C 0.114 3.886 9 H 0.039 0.961 10 N -0.666 5.666 11 C 0.121 3.879 12 C 0.023 3.977 13 C -0.490 4.490 14 H 0.048 0.952 15 C 0.028 3.972 16 N -0.908 5.908 17 Si 0.939 3.061 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.184 4.184 22 C -0.167 4.167 23 C -0.103 4.103 24 C -0.071 4.071 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.095 0.905 31 H 0.339 0.661 32 H -0.003 1.003 33 H 0.055 0.945 34 H 0.257 0.743 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.286 16.065 -3.043 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.139 4.139 4 C -0.125 4.125 5 C -0.107 4.107 6 C -0.109 4.109 7 C -0.146 4.146 8 C 0.004 3.996 9 H 0.056 0.944 10 N -0.297 5.297 11 C -0.008 4.008 12 C 0.022 3.978 13 C -0.529 4.529 14 H 0.066 0.934 15 C -0.172 4.172 16 N -0.547 5.547 17 Si 0.766 3.234 18 H -0.196 1.196 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.222 4.222 22 C -0.205 4.205 23 C -0.141 4.141 24 C -0.108 4.108 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.170 0.830 29 H 0.167 0.833 30 H 0.114 0.886 31 H 0.159 0.841 32 H 0.015 0.985 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.698 16.019 -2.709 16.662 hybrid contribution -1.775 -1.158 -0.506 2.179 sum 1.924 14.861 -3.215 15.326 Atomic orbital electron populations 1.20807 0.89834 1.03219 1.02937 1.20054 0.97173 0.92647 0.99905 1.21239 0.94142 0.97804 1.00747 1.20929 0.94111 0.97414 1.00026 1.20850 0.97015 0.92878 0.99992 1.20752 0.93527 0.96302 1.00288 1.20619 0.93468 0.98036 1.02463 1.21228 0.94544 0.90166 0.93637 0.94371 1.60665 1.17079 1.04324 1.47598 1.21208 0.96322 0.88423 0.94855 1.18956 0.92106 0.91325 0.95400 1.20521 0.91562 1.31600 1.09176 0.93377 1.25572 1.01556 0.94599 0.95433 1.70088 1.30513 1.39837 1.14229 0.85901 0.80489 0.78403 0.78626 1.19562 1.21276 1.20126 1.22981 0.98183 1.05698 0.95295 1.22422 1.03254 0.95339 0.99461 1.22349 0.95024 0.94796 1.01951 1.21034 0.90689 0.96076 1.02957 0.90324 0.92725 0.89451 0.83043 0.83288 0.88636 0.84128 0.98528 0.92637 0.93355 0.89270 0.90966 0.92587 0.91033 0.90933 0.90057 0.88845 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 10.01 71.24 0.71 -1.81 16 2 C -0.10 -2.73 5.88 -19.89 -0.12 -2.85 16 3 C -0.12 -2.81 9.70 22.24 0.22 -2.59 16 4 C -0.11 -2.47 10.04 22.30 0.22 -2.25 16 5 C -0.11 -2.95 6.14 -19.60 -0.12 -3.07 16 6 C -0.11 -3.68 5.74 -19.59 -0.11 -3.79 16 7 C -0.13 -4.40 9.13 22.30 0.20 -4.20 16 8 C 0.11 4.06 3.19 44.83 0.14 4.20 16 9 H 0.04 1.43 7.87 -2.39 -0.02 1.42 16 10 N -0.67 -28.52 6.08 -491.98 -2.99 -31.51 16 11 C 0.12 5.55 5.62 86.30 0.48 6.04 16 12 C 0.02 1.13 1.76 -52.93 -0.09 1.04 16 13 C -0.49 -26.82 7.47 25.60 0.19 -26.63 16 14 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 15 C 0.03 1.55 5.39 84.66 0.46 2.01 16 16 N -0.91 -52.01 12.93 21.45 0.28 -51.73 16 17 Si 0.94 43.79 29.55 68.60 2.03 45.82 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 C -0.18 -8.13 9.88 30.59 0.30 -7.82 16 22 C -0.17 -8.00 9.46 30.59 0.29 -7.72 16 23 C -0.10 -2.92 6.75 31.51 0.21 -2.71 16 24 C -0.07 -1.60 6.77 30.52 0.21 -1.40 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.37 8.09 -2.38 -0.02 1.35 16 27 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 28 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.10 3.67 7.64 -2.91 -0.02 3.65 16 31 H 0.34 16.21 6.51 -89.69 -0.58 15.62 16 32 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 33 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 34 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 35 H 0.09 3.45 8.08 -2.38 -0.02 3.43 16 36 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 39 H 0.07 2.23 8.09 -2.38 -0.02 2.22 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -61.38 342.49 2.92 -58.47 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 0.40 Total: 32.49 kcal Atomic # 6 Polarization: -56.73 SS G_CDS: 3.20 Total: -53.53 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -2.71 Total: -83.24 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -61.38 2.92 -58.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430727610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.537 kcal (2) G-P(sol) polarization free energy of solvation -61.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds