Wall clock time and date at job start Mon Mar 30 2020 01:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86793 * 120.00023 * 2 1 4 4 H 1.48500 * 109.47209 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47381 * 300.00102 * 3 2 1 6 6 H 1.48495 * 109.47416 * 60.00092 * 3 2 1 7 7 C 1.37879 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99513 * 190.47718 * 7 2 1 9 9 C 1.50701 * 120.00053 * 10.74559 * 7 2 1 10 10 C 1.52994 * 115.54875 * 35.34159 * 9 7 2 11 11 N 1.46903 * 109.47294 * 54.97632 * 10 9 7 12 12 C 1.46902 * 110.99825 * 178.13169 * 11 10 9 13 13 H 1.09008 * 109.47230 * 320.00189 * 12 11 10 14 14 C 1.50696 * 109.46929 * 200.00442 * 12 11 10 15 15 C 1.38240 * 120.00039 * 312.90016 * 14 12 11 16 16 C 1.38234 * 119.99998 * 179.77009 * 15 14 12 17 17 C 1.38236 * 119.99923 * 0.50678 * 16 15 14 18 18 C 1.38240 * 120.00147 * 359.74816 * 17 16 15 19 19 C 1.38226 * 119.99434 * 359.97438 * 18 17 16 20 20 C 1.52997 * 109.47355 * 80.00314 * 12 11 10 21 21 C 1.53007 * 117.49969 * 248.74785 * 20 12 11 22 22 C 1.53001 * 117.50101 * 180.08539 * 20 12 11 23 23 C 1.52999 * 117.49914 * 249.66291 * 9 7 2 24 24 C 1.52998 * 117.49386 * 181.00686 * 9 7 2 25 25 H 0.97002 * 119.99287 * 4.67663 * 1 2 3 26 26 H 1.08995 * 109.47043 * 174.97716 * 10 9 7 27 27 H 1.09001 * 109.47468 * 294.97780 * 10 9 7 28 28 H 1.00895 * 110.99839 * 54.18009 * 11 10 9 29 29 H 1.07997 * 119.99413 * 0.02562 * 15 14 12 30 30 H 1.07998 * 119.99805 * 180.23717 * 16 15 14 31 31 H 1.08005 * 119.99492 * 179.72912 * 17 16 15 32 32 H 1.07997 * 119.99639 * 179.97438 * 18 17 16 33 33 H 1.08009 * 119.99193 * 179.97438 * 19 18 17 34 34 H 1.09002 * 115.54937 * 34.41058 * 20 12 11 35 35 H 1.09002 * 117.49598 * 359.97438 * 21 20 12 36 36 H 1.08995 * 117.50076 * 145.01858 * 21 20 12 37 37 H 1.09000 * 117.49737 * 214.97843 * 22 20 12 38 38 H 1.08998 * 117.49749 * 359.97438 * 22 20 12 39 39 H 1.08998 * 117.49765 * 0.02562 * 23 9 7 40 40 H 1.09000 * 117.49307 * 145.02234 * 23 9 7 41 41 H 1.09001 * 117.49403 * 214.97884 * 24 9 7 42 42 H 1.08991 * 117.50312 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0711 -1.2020 0.1696 9 6 1.2708 -2.4876 -0.2444 10 6 0.1119 -2.4112 -1.2404 11 7 0.5947 -1.8559 -2.5118 12 6 -0.4832 -1.8087 -3.5087 13 1 -1.0869 -2.7133 -3.4343 14 6 0.1133 -1.7152 -4.8894 15 6 1.1234 -0.8069 -5.1459 16 6 1.6738 -0.7244 -6.4113 17 6 1.2070 -1.5429 -7.4228 18 6 0.1933 -2.4475 -7.1676 19 6 -0.3531 -2.5339 -5.9009 20 6 -1.3642 -0.5849 -3.2498 21 6 -2.7893 -0.8330 -2.7512 22 6 -2.5521 -0.3585 -4.1871 23 6 1.1262 -3.4511 0.9352 24 6 2.0879 -3.7807 -0.2091 25 1 -0.4849 0.8373 -0.0685 26 1 -0.2885 -3.4108 -1.4092 27 1 -0.6715 -1.7692 -0.8377 28 1 1.3848 -2.3791 -2.8581 29 1 1.4852 -0.1647 -4.3566 30 1 2.4656 -0.0175 -6.6106 31 1 1.6342 -1.4753 -8.4125 32 1 -0.1716 -3.0865 -7.9580 33 1 -1.1455 -3.2403 -5.7017 34 1 -0.8455 0.2965 -2.8728 35 1 -3.0993 -1.8682 -2.6080 36 1 -3.2082 -0.1147 -2.0465 37 1 -2.8151 0.6719 -4.4264 38 1 -2.7058 -1.0812 -4.9885 39 1 1.5615 -3.1492 1.8879 40 1 0.2055 -4.0308 1.0016 41 1 1.7994 -4.5771 -0.8952 42 1 3.1561 -3.6958 -0.0099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430733220.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:29 Heat of formation + Delta-G solvation = 79.553808 kcal Electronic energy + Delta-G solvation = -21167.774564 eV Core-core repulsion = 18307.206559 eV Total energy + Delta-G solvation = -2860.568005 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.36958 -37.29353 -36.40139 -33.59814 -31.95554 -30.73012 -30.50591 -26.27858 -25.22991 -23.24616 -22.29656 -21.97852 -21.50634 -21.07768 -19.22445 -18.87165 -16.71289 -16.03994 -15.39519 -15.04534 -14.74691 -14.53268 -14.14761 -13.80384 -13.35702 -13.14063 -12.91512 -12.76499 -12.43761 -12.14598 -11.50313 -11.31020 -11.16343 -11.07729 -10.84674 -10.78667 -10.60575 -10.47247 -10.39141 -10.02481 -9.79444 -9.48458 -9.12998 -8.95384 -8.66157 -8.59676 -8.42013 -7.89648 -7.27319 -5.84524 -3.86109 1.60274 1.67498 3.37136 3.45870 3.49950 4.04631 4.34075 4.53764 4.80155 5.10884 5.13926 5.20656 5.21973 5.39152 5.42998 5.56656 5.67557 5.73686 5.77525 5.89028 6.01781 6.02771 6.13061 6.22262 6.25808 6.35404 6.37376 6.43695 6.57282 6.63313 6.68749 6.73889 6.78462 6.83379 6.91628 6.95771 7.03300 7.24267 7.27918 7.38510 7.73308 8.11465 8.23263 8.43852 8.66948 9.06850 9.73636 11.16958 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.006531 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.760081 B = 4286.208866 C = 4398.166610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.093 3.907 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.291 1.291 7 C -0.477 4.477 8 H 0.052 0.948 9 C 0.063 3.937 10 C 0.106 3.894 11 N -0.643 5.643 12 C 0.159 3.841 13 H 0.033 0.967 14 C -0.069 4.069 15 C -0.088 4.088 16 C -0.125 4.125 17 C -0.130 4.130 18 C -0.127 4.127 19 C -0.119 4.119 20 C -0.105 4.105 21 C -0.172 4.172 22 C -0.193 4.193 23 C -0.206 4.206 24 C -0.220 4.220 25 H 0.255 0.745 26 H -0.023 1.023 27 H 0.121 0.879 28 H 0.327 0.673 29 H 0.134 0.866 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 -2.549 -11.721 12.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.111 4.111 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.217 1.217 7 C -0.514 4.514 8 H 0.071 0.929 9 C 0.062 3.938 10 C -0.022 4.022 11 N -0.272 5.272 12 C 0.049 3.951 13 H 0.050 0.950 14 C -0.069 4.069 15 C -0.107 4.107 16 C -0.143 4.143 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.138 4.138 20 C -0.124 4.124 21 C -0.209 4.209 22 C -0.231 4.231 23 C -0.245 4.245 24 C -0.257 4.257 25 H 0.065 0.935 26 H -0.005 1.005 27 H 0.138 0.862 28 H 0.144 0.856 29 H 0.152 0.848 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.150 -1.762 -11.446 12.001 hybrid contribution 0.399 -0.201 -0.250 0.512 sum -2.752 -1.964 -11.696 12.174 Atomic orbital electron populations 1.69858 1.05733 1.25874 1.48475 1.24672 0.94481 0.98128 0.93819 0.86731 0.80372 0.84653 0.77209 1.20158 1.20976 1.21724 1.20284 0.93162 0.89295 1.48672 0.92943 1.19009 0.93710 0.88381 0.92670 1.21672 0.99090 0.93615 0.87824 1.60268 1.06021 1.58581 1.02316 1.19923 0.92455 0.95047 0.87668 0.94968 1.20013 0.96080 0.95562 0.95288 1.21196 0.95211 0.97646 0.96611 1.21176 1.00154 0.99539 0.93471 1.21052 0.97840 0.97038 0.98867 1.20991 0.97622 0.99312 0.96627 1.21019 1.00172 0.99510 0.93097 1.22130 0.88691 1.00251 1.01333 1.22871 1.00493 1.01488 0.96037 1.22932 1.05190 1.01421 0.93532 1.22941 0.98998 1.07823 0.94720 1.22925 0.96741 1.02796 1.03285 0.93476 1.00521 0.86155 0.85574 0.84809 0.86466 0.86807 0.86749 0.86815 0.86718 0.89774 0.89074 0.89635 0.89745 0.90530 0.92096 0.92051 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.61 10.75 55.43 0.60 -22.01 16 2 C 0.09 2.43 5.19 -17.81 -0.09 2.34 16 3 Si 0.88 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.48 -12.67 8.74 -34.44 -0.30 -12.97 16 8 H 0.05 1.43 7.84 -52.48 -0.41 1.02 16 9 C 0.06 1.52 2.00 -155.66 -0.31 1.21 16 10 C 0.11 2.40 4.59 -3.83 -0.02 2.38 16 11 N -0.64 -13.13 5.49 -107.95 -0.59 -13.72 16 12 C 0.16 2.80 2.42 -68.87 -0.17 2.64 16 13 H 0.03 0.58 7.41 -51.92 -0.38 0.19 16 14 C -0.07 -1.10 4.32 -104.62 -0.45 -1.55 16 15 C -0.09 -1.41 9.19 -39.58 -0.36 -1.77 16 16 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 16 17 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 18 C -0.13 -1.60 10.05 -39.59 -0.40 -2.00 16 19 C -0.12 -1.68 9.67 -39.59 -0.38 -2.06 16 20 C -0.11 -1.86 4.91 -90.62 -0.44 -2.31 16 21 C -0.17 -2.80 10.18 -26.69 -0.27 -3.07 16 22 C -0.19 -2.89 9.87 -26.69 -0.26 -3.16 16 23 C -0.21 -4.72 9.96 -26.70 -0.27 -4.98 16 24 C -0.22 -4.81 9.93 -26.70 -0.27 -5.07 16 25 H 0.25 6.51 8.32 -40.82 -0.34 6.17 16 26 H -0.02 -0.51 7.98 -51.93 -0.41 -0.92 16 27 H 0.12 3.00 5.68 -51.93 -0.29 2.70 16 28 H 0.33 6.64 8.32 -39.29 -0.33 6.31 16 29 H 0.13 2.34 7.94 -52.49 -0.42 1.93 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.11 1.45 7.99 -52.48 -0.42 1.03 16 34 H 0.11 2.37 8.14 -51.93 -0.42 1.95 16 35 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 36 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -26.20 347.04 -11.45 -37.66 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -6.87 Total: 11.48 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: -4.79 Total: -34.52 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.00 Total: -35.73 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.20 -11.45 -37.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430733220.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.211 kcal (2) G-P(sol) polarization free energy of solvation -26.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds