Wall clock time and date at job start Mon Mar 30 2020 01:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86793 * 120.00023 * 2 1 4 4 H 1.48500 * 109.47209 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47381 * 300.00102 * 3 2 1 6 6 H 1.48495 * 109.47416 * 60.00092 * 3 2 1 7 7 C 1.37879 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99513 * 190.47718 * 7 2 1 9 9 C 1.50701 * 120.00053 * 10.74559 * 7 2 1 10 10 C 1.52994 * 115.54875 * 35.34159 * 9 7 2 11 11 N 1.46903 * 109.47294 * 54.97632 * 10 9 7 12 12 C 1.46902 * 110.99825 * 178.13169 * 11 10 9 13 13 H 1.09008 * 109.47230 * 320.00189 * 12 11 10 14 14 C 1.50696 * 109.46929 * 200.00442 * 12 11 10 15 15 C 1.38240 * 120.00039 * 312.90016 * 14 12 11 16 16 C 1.38234 * 119.99998 * 179.77009 * 15 14 12 17 17 C 1.38236 * 119.99923 * 0.50678 * 16 15 14 18 18 C 1.38240 * 120.00147 * 359.74816 * 17 16 15 19 19 C 1.38226 * 119.99434 * 359.97438 * 18 17 16 20 20 C 1.52997 * 109.47355 * 80.00314 * 12 11 10 21 21 C 1.53007 * 117.49969 * 248.74785 * 20 12 11 22 22 C 1.53001 * 117.50101 * 180.08539 * 20 12 11 23 23 C 1.52999 * 117.49914 * 249.66291 * 9 7 2 24 24 C 1.52998 * 117.49386 * 181.00686 * 9 7 2 25 25 H 0.97002 * 119.99287 * 4.67663 * 1 2 3 26 26 H 1.08995 * 109.47043 * 174.97716 * 10 9 7 27 27 H 1.09001 * 109.47468 * 294.97780 * 10 9 7 28 28 H 1.00895 * 110.99839 * 54.18009 * 11 10 9 29 29 H 1.07997 * 119.99413 * 0.02562 * 15 14 12 30 30 H 1.07998 * 119.99805 * 180.23717 * 16 15 14 31 31 H 1.08005 * 119.99492 * 179.72912 * 17 16 15 32 32 H 1.07997 * 119.99639 * 179.97438 * 18 17 16 33 33 H 1.08009 * 119.99193 * 179.97438 * 19 18 17 34 34 H 1.09002 * 115.54937 * 34.41058 * 20 12 11 35 35 H 1.09002 * 117.49598 * 359.97438 * 21 20 12 36 36 H 1.08995 * 117.50076 * 145.01858 * 21 20 12 37 37 H 1.09000 * 117.49737 * 214.97843 * 22 20 12 38 38 H 1.08998 * 117.49749 * 359.97438 * 22 20 12 39 39 H 1.08998 * 117.49765 * 0.02562 * 23 9 7 40 40 H 1.09000 * 117.49307 * 145.02234 * 23 9 7 41 41 H 1.09001 * 117.49403 * 214.97884 * 24 9 7 42 42 H 1.08991 * 117.50312 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0711 -1.2020 0.1696 9 6 1.2708 -2.4876 -0.2444 10 6 0.1119 -2.4112 -1.2404 11 7 0.5947 -1.8559 -2.5118 12 6 -0.4832 -1.8087 -3.5087 13 1 -1.0869 -2.7133 -3.4343 14 6 0.1133 -1.7152 -4.8894 15 6 1.1234 -0.8069 -5.1459 16 6 1.6738 -0.7244 -6.4113 17 6 1.2070 -1.5429 -7.4228 18 6 0.1933 -2.4475 -7.1676 19 6 -0.3531 -2.5339 -5.9009 20 6 -1.3642 -0.5849 -3.2498 21 6 -2.7893 -0.8330 -2.7512 22 6 -2.5521 -0.3585 -4.1871 23 6 1.1262 -3.4511 0.9352 24 6 2.0879 -3.7807 -0.2091 25 1 -0.4849 0.8373 -0.0685 26 1 -0.2885 -3.4108 -1.4092 27 1 -0.6715 -1.7692 -0.8377 28 1 1.3848 -2.3791 -2.8581 29 1 1.4852 -0.1647 -4.3566 30 1 2.4656 -0.0175 -6.6106 31 1 1.6342 -1.4753 -8.4125 32 1 -0.1716 -3.0865 -7.9580 33 1 -1.1455 -3.2403 -5.7017 34 1 -0.8455 0.2965 -2.8728 35 1 -3.0993 -1.8682 -2.6080 36 1 -3.2082 -0.1147 -2.0465 37 1 -2.8151 0.6719 -4.4264 38 1 -2.7058 -1.0812 -4.9885 39 1 1.5615 -3.1492 1.8879 40 1 0.2055 -4.0308 1.0016 41 1 1.7994 -4.5771 -0.8952 42 1 3.1561 -3.6958 -0.0099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430733220.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:29 Heat of formation + Delta-G solvation = 68.647224 kcal Electronic energy + Delta-G solvation = -21168.247509 eV Core-core repulsion = 18307.206559 eV Total energy + Delta-G solvation = -2861.040950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56337 -38.79456 -37.94231 -35.06935 -33.96746 -31.91996 -31.64051 -27.84865 -27.10412 -24.83383 -23.42240 -23.21463 -22.87697 -22.68780 -20.77880 -20.52704 -18.24688 -17.49901 -16.76659 -16.59970 -16.29474 -15.93606 -15.66202 -15.20885 -14.89086 -14.57407 -14.35543 -14.08893 -13.75235 -13.51596 -13.19646 -13.07639 -12.81064 -12.48400 -12.40188 -12.32662 -12.22265 -11.95399 -11.90600 -11.75377 -11.26503 -11.01077 -10.90835 -10.65206 -10.47054 -9.84855 -9.72263 -9.52839 -8.87322 -7.85532 -5.92476 0.53196 0.60552 1.43651 1.49035 1.55949 2.54939 2.93902 3.05915 3.15825 3.46613 3.78235 3.91870 4.08370 4.10951 4.25354 4.27367 4.31963 4.38772 4.42471 4.55995 4.62150 4.75114 4.77976 4.80507 4.83141 4.89854 4.95402 5.01555 5.09603 5.16279 5.19429 5.26677 5.30995 5.38722 5.51386 5.57106 5.64625 5.71077 5.76365 5.86110 6.16070 6.21501 6.51354 6.64672 6.93635 7.03994 7.67903 9.12553 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.006531 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.760081 B = 4286.208866 C = 4398.166610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.063 3.937 3 Si 0.928 3.072 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.290 1.290 7 C -0.495 4.495 8 H 0.036 0.964 9 C 0.035 3.965 10 C 0.122 3.878 11 N -0.651 5.651 12 C 0.167 3.833 13 H 0.032 0.968 14 C -0.083 4.083 15 C -0.109 4.109 16 C -0.130 4.130 17 C -0.125 4.125 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.175 4.175 22 C -0.164 4.164 23 C -0.208 4.208 24 C -0.199 4.199 25 H 0.253 0.747 26 H -0.019 1.019 27 H 0.096 0.904 28 H 0.325 0.675 29 H 0.105 0.895 30 H 0.132 0.868 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 -3.422 -14.145 14.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.140 4.140 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.217 1.217 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.034 3.966 10 C -0.007 4.007 11 N -0.280 5.280 12 C 0.057 3.943 13 H 0.050 0.950 14 C -0.083 4.083 15 C -0.128 4.128 16 C -0.148 4.148 17 C -0.143 4.143 18 C -0.140 4.140 19 C -0.143 4.143 20 C -0.143 4.143 21 C -0.212 4.212 22 C -0.201 4.201 23 C -0.246 4.246 24 C -0.237 4.237 25 H 0.063 0.937 26 H -0.001 1.001 27 H 0.114 0.886 28 H 0.142 0.858 29 H 0.123 0.877 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.145 0.855 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.517 -2.635 -13.868 14.548 hybrid contribution 0.536 0.069 0.478 0.721 sum -2.981 -2.566 -13.390 13.956 Atomic orbital electron populations 1.69952 1.06183 1.26064 1.48533 1.25101 0.95114 0.99965 0.93826 0.86008 0.79254 0.82171 0.76918 1.20437 1.21008 1.21672 1.20390 0.92542 0.90903 1.49388 0.94619 1.19133 0.95044 0.88387 0.94016 1.21345 0.97728 0.93182 0.88437 1.60166 1.06996 1.58416 1.02463 1.19847 0.91581 0.94699 0.88147 0.95004 1.19879 0.96838 0.96827 0.94805 1.21056 0.96422 0.98204 0.97126 1.21380 1.00396 1.00176 0.92862 1.21431 0.97252 0.95856 0.99732 1.21376 0.96852 0.99104 0.96640 1.21197 1.00563 0.99222 0.93272 1.21934 0.89315 0.99212 1.03789 1.22886 0.99389 1.01744 0.97167 1.22957 1.01869 1.02335 0.92972 1.22929 0.99879 1.07550 0.94257 1.22895 0.96414 1.01764 1.02589 0.93683 1.00113 0.88623 0.85772 0.87708 0.85036 0.83682 0.83587 0.85502 0.90371 0.89220 0.89712 0.88678 0.88116 0.91445 0.90841 0.90031 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.79 10.75 21.45 0.23 -46.56 16 2 C 0.06 3.35 5.19 84.65 0.44 3.79 16 3 Si 0.93 43.92 29.55 68.60 2.03 45.95 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 7 C -0.50 -26.87 8.74 25.60 0.22 -26.65 16 8 H 0.04 2.00 7.84 -2.91 -0.02 1.98 16 9 C 0.03 1.70 2.00 -52.93 -0.11 1.60 16 10 C 0.12 5.57 4.59 86.30 0.40 5.97 16 11 N -0.65 -27.20 5.49 -495.46 -2.72 -29.92 16 12 C 0.17 5.91 2.42 44.17 0.11 6.02 16 13 H 0.03 1.13 7.41 -2.38 -0.02 1.11 16 14 C -0.08 -2.58 4.32 -19.87 -0.09 -2.67 16 15 C -0.11 -3.50 9.19 22.27 0.20 -3.30 16 16 C -0.13 -3.37 10.05 22.27 0.22 -3.14 16 17 C -0.12 -2.67 10.05 22.27 0.22 -2.45 16 18 C -0.12 -2.60 10.05 22.27 0.22 -2.37 16 19 C -0.12 -3.17 9.67 22.27 0.22 -2.95 16 20 C -0.12 -4.45 4.91 -10.79 -0.05 -4.50 16 21 C -0.17 -5.68 10.18 30.62 0.31 -5.36 16 22 C -0.16 -4.71 9.87 30.62 0.30 -4.41 16 23 C -0.21 -9.44 9.96 30.62 0.30 -9.13 16 24 C -0.20 -8.56 9.93 30.62 0.30 -8.25 16 25 H 0.25 13.29 8.32 -92.71 -0.77 12.52 16 26 H -0.02 -0.83 7.98 -2.39 -0.02 -0.85 16 27 H 0.10 4.89 5.68 -2.39 -0.01 4.88 16 28 H 0.32 13.48 8.32 -89.70 -0.75 12.73 16 29 H 0.10 3.89 7.94 -2.91 -0.02 3.86 16 30 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 32 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.13 2.85 7.99 -2.91 -0.02 2.83 16 34 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.09 2.78 8.05 -2.39 -0.02 2.77 16 36 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -56.69 347.04 3.01 -53.68 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 0.24 Total: 34.68 kcal Atomic # 6 Polarization: -61.07 SS G_CDS: 3.24 Total: -57.83 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -2.49 Total: -76.48 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -56.69 3.01 -53.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430733220.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.324 kcal (2) G-P(sol) polarization free energy of solvation -56.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds