Wall clock time and date at job start Mon Mar 30 2020 02:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.88234 * 2 1 4 4 C 1.54349 * 110.82113 * 236.48924 * 2 1 3 5 5 C 1.51366 * 105.16871 * 215.42116 * 4 2 1 6 6 C 1.38496 * 130.38815 * 197.17183 * 5 4 2 7 7 C 1.38113 * 120.21493 * 180.02562 * 6 5 4 8 8 C 1.38253 * 119.93002 * 0.02562 * 7 6 5 9 9 C 1.38097 * 119.94041 * 359.97438 * 8 7 6 10 10 C 1.38218 * 109.75954 * 17.20328 * 5 4 2 11 11 C 1.51369 * 109.75701 * 359.97438 * 10 5 4 12 12 H 1.09003 * 110.30397 * 223.89431 * 11 10 5 13 13 N 1.46909 * 110.29575 * 101.75062 * 11 10 5 14 14 C 1.46899 * 110.99887 * 88.52529 * 13 11 10 15 15 C 1.53005 * 109.46876 * 182.50298 * 14 13 11 16 16 C 1.50691 * 115.54969 * 281.41453 * 15 14 13 17 17 H 1.08001 * 120.00427 * 146.59182 * 16 15 14 18 18 C 1.37882 * 120.00384 * 326.59142 * 16 15 14 19 19 N 1.31507 * 120.00147 * 164.55922 * 18 16 15 20 20 Si 1.86800 * 119.99568 * 344.55986 * 18 16 15 21 21 H 1.48499 * 109.47384 * 95.68409 * 20 18 16 22 22 H 1.48501 * 109.46880 * 215.68220 * 20 18 16 23 23 H 1.48496 * 109.47223 * 335.68047 * 20 18 16 24 24 C 1.53002 * 117.49633 * 135.70241 * 15 14 13 25 25 C 1.52997 * 60.00224 * 252.51151 * 24 15 14 26 26 H 1.08998 * 109.47177 * 298.92192 * 1 2 3 27 27 H 1.09000 * 109.47333 * 58.93137 * 1 2 3 28 28 H 1.09000 * 109.46897 * 178.92623 * 1 2 3 29 29 H 1.09000 * 110.30153 * 96.50516 * 4 2 1 30 30 H 1.09000 * 110.30737 * 334.35139 * 4 2 1 31 31 H 1.07999 * 119.89621 * 0.03583 * 6 5 4 32 32 H 1.07997 * 120.03336 * 180.02562 * 7 6 5 33 33 H 1.07999 * 120.02777 * 180.02562 * 8 7 6 34 34 H 1.08004 * 119.89527 * 180.02562 * 9 8 7 35 35 H 1.00891 * 111.00005 * 324.56586 * 13 11 10 36 36 H 1.09002 * 109.47061 * 302.50081 * 14 13 11 37 37 H 1.08997 * 109.47582 * 62.50629 * 14 13 11 38 38 H 0.97007 * 119.99758 * 180.02562 * 19 18 16 39 39 H 1.09001 * 117.49663 * 0.02562 * 24 15 14 40 40 H 1.09003 * 117.49126 * 145.01608 * 24 15 14 41 41 H 1.08997 * 117.49905 * 252.51259 * 25 24 15 42 42 H 1.08999 * 117.49832 * 107.48664 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0786 -0.7965 -1.2029 5 6 3.3322 -1.4732 -0.6913 6 6 4.3890 -2.0441 -1.3807 7 6 5.4421 -2.6131 -0.6916 8 6 5.4418 -2.6137 0.6909 9 6 4.3889 -2.0450 1.3802 10 6 3.3321 -1.4736 0.6909 11 6 2.0788 -0.7965 1.2027 12 1 2.3216 -0.1222 2.0240 13 7 1.0990 -1.8005 1.6388 14 6 1.3022 -2.1564 3.0494 15 6 0.3061 -3.2469 3.4488 16 6 -1.0965 -2.7741 3.7316 17 1 -1.9382 -3.4075 3.4935 18 6 -1.3054 -1.5328 4.2942 19 7 -2.5032 -0.9907 4.2649 20 14 0.1131 -0.6211 5.0980 21 1 0.7068 0.3289 4.1233 22 1 -0.3860 0.1286 6.2788 23 1 1.1461 -1.5960 5.5312 24 6 0.8368 -4.4201 4.2753 25 6 0.4707 -4.6246 2.8039 26 1 -0.3633 0.4970 0.8995 27 1 -0.3634 0.5303 -0.8802 28 1 -0.3633 -1.0275 -0.0193 29 1 2.3213 -0.1221 -2.0241 30 1 1.3518 -1.5415 -1.5265 31 1 4.3898 -2.0443 -2.4607 32 1 6.2648 -3.0571 -1.2322 33 1 6.2646 -3.0579 1.2313 34 1 4.3896 -2.0455 2.4602 35 1 1.1342 -2.6194 1.0505 36 1 2.3188 -2.5242 3.1885 37 1 1.1459 -1.2758 3.6725 38 1 -2.6500 -0.1172 4.6605 39 1 1.8955 -4.4147 4.5348 40 1 0.1714 -4.8499 5.0240 41 1 -0.4355 -5.1891 2.5846 42 1 1.2886 -4.7540 2.0951 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430741744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:13 Heat of formation + Delta-G solvation = 46.789999 kcal Electronic energy + Delta-G solvation = -21424.432542 eV Core-core repulsion = 18562.443792 eV Total energy + Delta-G solvation = -2861.988750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42768 -39.07048 -37.47682 -34.46684 -34.26992 -31.77386 -31.63926 -28.70653 -27.41986 -26.92424 -25.33909 -23.05964 -22.81854 -21.80106 -21.09917 -20.55878 -18.51080 -17.71260 -17.11742 -16.83940 -16.16404 -15.78823 -15.75404 -15.25854 -14.88035 -14.80394 -14.58225 -14.24992 -14.05357 -13.72958 -13.62620 -13.33684 -12.92430 -12.90614 -12.40848 -12.21133 -12.17117 -12.04050 -11.85385 -11.75144 -11.67148 -11.44337 -11.25048 -11.12301 -10.51693 -10.34217 -9.82120 -9.57043 -9.06514 -8.28723 -6.19521 0.40674 0.46421 1.26119 1.34520 1.43543 2.33438 2.77713 2.88565 3.26325 3.40850 3.57532 3.70902 4.02851 4.07629 4.10632 4.13055 4.19257 4.22863 4.35967 4.46354 4.48440 4.56752 4.66989 4.71036 4.81889 4.83295 4.87664 4.87849 5.01958 5.04328 5.11675 5.15124 5.24199 5.27941 5.39158 5.48500 5.54079 5.59081 5.70404 5.74508 5.75445 6.10626 6.19090 6.33472 6.56552 6.76028 7.38698 8.88060 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019539 B = 0.006925 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.714502 B = 4042.394730 C = 4617.644163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.078 4.078 3 H 0.086 0.914 4 C -0.071 4.071 5 C -0.093 4.093 6 C -0.115 4.115 7 C -0.116 4.116 8 C -0.128 4.128 9 C -0.119 4.119 10 C -0.145 4.145 11 C 0.119 3.881 12 H 0.058 0.942 13 N -0.652 5.652 14 C 0.098 3.902 15 C -0.010 4.010 16 C -0.474 4.474 17 H 0.031 0.969 18 C 0.036 3.964 19 N -0.935 5.935 20 Si 0.952 3.048 21 H -0.276 1.276 22 H -0.308 1.308 23 H -0.254 1.254 24 C -0.201 4.201 25 C -0.169 4.169 26 H 0.026 0.974 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.108 0.892 35 H 0.342 0.658 36 H 0.030 0.970 37 H 0.042 0.958 38 H 0.264 0.736 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.237 -0.397 -11.733 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.097 4.097 3 H 0.104 0.896 4 C -0.108 4.108 5 C -0.094 4.094 6 C -0.132 4.132 7 C -0.134 4.134 8 C -0.146 4.146 9 C -0.138 4.138 10 C -0.147 4.147 11 C 0.009 3.991 12 H 0.076 0.924 13 N -0.282 5.282 14 C -0.030 4.030 15 C -0.011 4.011 16 C -0.511 4.511 17 H 0.049 0.951 18 C -0.163 4.163 19 N -0.574 5.574 20 Si 0.783 3.217 21 H -0.204 1.204 22 H -0.238 1.238 23 H -0.178 1.178 24 C -0.240 4.240 25 C -0.207 4.207 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.161 0.839 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.127 0.873 35 H 0.162 0.838 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.588 0.210 -11.534 20.205 hybrid contribution 0.683 -0.037 0.975 1.191 sum 17.270 0.173 -10.559 20.243 Atomic orbital electron populations 1.21387 0.93770 1.02149 0.99973 1.21841 0.96401 0.98326 0.93092 0.89595 1.21136 0.93163 0.98665 0.97789 1.20836 0.96515 0.98304 0.93718 1.20951 0.93035 0.98337 1.00921 1.21403 0.98881 0.98996 0.94094 1.21295 0.98316 0.99790 0.95157 1.20848 0.94085 0.99120 0.99703 1.21386 0.96399 1.01029 0.95840 1.21182 0.86898 0.93539 0.97512 0.92413 1.60532 1.49334 1.15934 1.02356 1.21692 0.95096 0.96444 0.89755 1.19249 0.93993 0.87072 1.00796 1.20342 0.89998 1.01051 1.39677 0.95107 1.25565 0.97413 0.97479 0.95851 1.70076 1.24514 1.17208 1.45619 0.85835 0.80367 0.78746 0.76764 1.20409 1.23764 1.17814 1.23179 1.00094 1.06766 0.93935 1.22698 1.01692 1.01216 0.95076 0.95473 0.91797 0.92541 0.88667 0.89797 0.83929 0.83096 0.84061 0.87341 0.83844 0.95228 0.94040 0.92720 0.89187 0.90431 0.90684 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 8.59 71.98 0.62 -3.10 16 2 C -0.08 -2.20 3.64 -9.88 -0.04 -2.23 16 3 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.07 -1.62 6.32 30.52 0.19 -1.43 16 5 C -0.09 -2.29 6.14 -19.60 -0.12 -2.41 16 6 C -0.11 -2.31 10.04 22.30 0.22 -2.08 16 7 C -0.12 -2.16 10.05 22.24 0.22 -1.93 16 8 C -0.13 -2.73 10.05 22.24 0.22 -2.50 16 9 C -0.12 -3.19 9.68 22.30 0.22 -2.98 16 10 C -0.14 -4.16 5.43 -19.59 -0.11 -4.27 16 11 C 0.12 3.93 3.04 44.83 0.14 4.07 16 12 H 0.06 2.11 7.86 -2.39 -0.02 2.09 16 13 N -0.65 -25.10 4.61 -491.95 -2.27 -27.37 16 14 C 0.10 4.16 4.47 86.30 0.39 4.55 16 15 C -0.01 -0.46 1.48 -52.93 -0.08 -0.54 16 16 C -0.47 -27.27 9.57 25.60 0.24 -27.03 16 17 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 18 C 0.04 2.09 5.40 84.66 0.46 2.54 16 19 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 20 Si 0.95 47.13 24.31 68.60 1.67 48.80 16 21 H -0.28 -13.31 6.87 99.48 0.68 -12.63 16 22 H -0.31 -15.31 7.11 99.48 0.71 -14.61 16 23 H -0.25 -11.72 6.79 99.48 0.68 -11.04 16 24 C -0.20 -8.23 9.88 30.59 0.30 -7.93 16 25 C -0.17 -6.73 9.50 30.59 0.29 -6.44 16 26 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 2.01 7.25 -2.39 -0.02 1.99 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 1.94 7.87 -2.39 -0.02 1.92 16 31 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.11 2.96 7.56 -2.91 -0.02 2.94 16 35 H 0.34 12.57 7.96 -89.70 -0.71 11.85 16 36 H 0.03 1.14 7.07 -2.39 -0.02 1.13 16 37 H 0.04 1.94 1.78 -2.39 0.00 1.93 16 38 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 39 H 0.09 3.23 8.10 -2.39 -0.02 3.21 16 40 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.09 3.21 8.10 -2.39 -0.02 3.19 16 Total: -1.00 -65.98 329.87 3.11 -62.88 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.23 Total: 27.92 kcal Atomic # 6 Polarization: -56.89 SS G_CDS: 3.17 Total: -53.72 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -1.97 Total: -85.88 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.67 Total: 48.80 kcal Total: -65.98 3.11 -62.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430741744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.667 kcal (2) G-P(sol) polarization free energy of solvation -65.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds