Wall clock time and date at job start Mon Mar 30 2020 02:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.88075 * 2 1 4 4 C 1.54349 * 110.82509 * 123.51511 * 2 1 3 5 5 C 1.51368 * 105.16740 * 91.87504 * 4 2 1 6 6 C 1.38495 * 130.38807 * 197.16271 * 5 4 2 7 7 C 1.38100 * 120.21477 * 180.02562 * 6 5 4 8 8 C 1.38253 * 119.93829 * 0.02562 * 7 6 5 9 9 C 1.38105 * 119.93172 * 359.97438 * 8 7 6 10 10 C 1.38217 * 109.76019 * 17.19580 * 5 4 2 11 11 C 1.51364 * 109.75796 * 359.97438 * 10 5 4 12 12 H 1.09004 * 110.30487 * 223.78993 * 11 10 5 13 13 N 1.46907 * 110.30237 * 101.74354 * 11 10 5 14 14 C 1.46897 * 111.00355 * 86.45266 * 13 11 10 15 15 C 1.52994 * 109.47020 * 183.05302 * 14 13 11 16 16 C 1.50701 * 115.55498 * 39.50963 * 15 14 13 17 17 H 1.07998 * 119.99982 * 265.57364 * 16 15 14 18 18 C 1.37875 * 119.99790 * 85.57047 * 16 15 14 19 19 N 1.31524 * 119.99957 * 353.64993 * 18 16 15 20 20 Si 1.86795 * 120.00065 * 173.65104 * 18 16 15 21 21 H 1.48509 * 109.47043 * 60.00284 * 20 18 16 22 22 H 1.48502 * 109.47266 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47490 * 300.00091 * 20 18 16 24 24 C 1.53003 * 117.49803 * 253.80373 * 15 14 13 25 25 C 1.53002 * 60.00142 * 252.51246 * 24 15 14 26 26 H 1.08998 * 109.46648 * 183.51407 * 1 2 3 27 27 H 1.08996 * 109.47293 * 303.51400 * 1 2 3 28 28 H 1.08995 * 109.47041 * 63.51519 * 1 2 3 29 29 H 1.09001 * 110.29975 * 332.95555 * 4 2 1 30 30 H 1.08999 * 110.30401 * 210.80361 * 4 2 1 31 31 H 1.07999 * 119.89392 * 0.06369 * 6 5 4 32 32 H 1.08005 * 120.03402 * 179.97438 * 7 6 5 33 33 H 1.07993 * 120.03631 * 180.02562 * 8 7 6 34 34 H 1.08001 * 119.89334 * 180.02562 * 9 8 7 35 35 H 1.00903 * 110.99883 * 210.41129 * 13 11 10 36 36 H 1.09000 * 109.46705 * 303.05223 * 14 13 11 37 37 H 1.08998 * 109.46997 * 63.04928 * 14 13 11 38 38 H 0.96999 * 119.99583 * 179.97438 * 19 18 16 39 39 H 1.09007 * 117.49476 * 0.02562 * 24 15 14 40 40 H 1.09004 * 117.50224 * 145.01894 * 24 15 14 41 41 H 1.08998 * 117.49675 * 252.50973 * 25 24 15 42 42 H 1.09000 * 117.51656 * 107.47785 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0787 -0.7966 1.2028 5 6 2.2642 -2.2090 0.6910 6 6 2.4212 -3.3999 1.3803 7 6 2.5774 -4.5864 0.6912 8 6 2.5778 -4.5864 -0.6913 9 6 2.4214 -3.3999 -1.3805 10 6 2.2643 -2.2089 -0.6912 11 6 2.0782 -0.7966 -1.2028 12 1 1.3629 -0.7834 -2.0252 13 7 3.3654 -0.2387 -1.6390 14 6 3.6483 -0.5968 -3.0353 15 6 5.0275 -0.0642 -3.4288 16 6 6.0946 -0.1783 -2.3708 17 1 6.2922 0.6537 -1.7112 18 6 6.8186 -1.3449 -2.2449 19 7 6.4961 -2.3996 -2.9616 20 14 8.2575 -1.4277 -1.0566 21 1 7.7776 -1.1528 0.3216 22 1 8.8646 -2.7819 -1.1079 23 1 9.2736 -0.4143 -1.4383 24 6 5.0770 1.1532 -4.3542 25 6 5.4586 -0.2291 -4.8876 26 1 -0.3632 -1.0257 0.0630 27 1 -0.3634 0.5674 0.8568 28 1 -0.3633 0.4583 -0.9198 29 1 1.3621 -0.7829 2.0240 30 1 3.0339 -0.3829 1.5263 31 1 2.4208 -3.4008 2.4603 32 1 2.7000 -5.5134 1.2317 33 1 2.6994 -5.5134 -1.2318 34 1 2.4214 -3.4007 -2.4605 35 1 3.3879 0.7618 -1.5105 36 1 3.6335 -1.6814 -3.1423 37 1 2.8905 -0.1573 -3.6838 38 1 7.0057 -3.2202 -2.8732 39 1 4.1269 1.5750 -4.6822 40 1 5.8814 1.8721 -4.1977 41 1 6.5140 -0.4197 -5.0821 42 1 4.7596 -0.7173 -5.5668 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430741747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:16 Heat of formation + Delta-G solvation = 47.802790 kcal Electronic energy + Delta-G solvation = -21266.692919 eV Core-core repulsion = 18404.748086 eV Total energy + Delta-G solvation = -2861.944832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.96191 -36.94295 -36.03166 -33.03139 -31.70481 -30.45891 -30.15557 -26.58512 -26.24408 -25.11925 -23.18808 -21.61220 -21.03051 -20.35144 -19.84108 -18.79948 -15.98203 -15.85240 -15.21683 -14.92331 -14.78470 -14.49728 -14.17055 -13.67469 -13.32030 -13.02888 -12.82998 -12.62581 -12.35966 -12.26600 -11.98368 -11.62653 -11.34086 -10.87204 -10.84068 -10.82396 -10.75318 -10.62352 -10.45315 -10.36512 -10.28900 -10.04629 -9.34833 -8.75123 -8.32562 -8.22720 -8.08054 -7.94847 -7.37187 -5.83245 -3.83026 1.85632 1.89246 3.43045 3.46815 3.50059 4.21574 4.57447 4.63113 4.88811 4.97640 5.26448 5.35202 5.40551 5.43881 5.45864 5.48668 5.57781 5.71970 5.76795 5.89933 5.96534 6.07418 6.10720 6.15806 6.18138 6.25619 6.34788 6.40801 6.50241 6.55827 6.63090 6.68169 6.78437 6.89160 6.97370 7.02682 7.16187 7.19331 7.48393 7.52972 7.54399 8.07574 8.09457 8.31083 8.64650 9.11587 9.79074 11.27172 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.007541 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.862877 B = 3712.376703 C = 4502.208982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.084 0.916 4 C -0.068 4.068 5 C -0.088 4.088 6 C -0.118 4.118 7 C -0.126 4.126 8 C -0.123 4.123 9 C -0.086 4.086 10 C -0.061 4.061 11 C 0.126 3.874 12 H 0.040 0.960 13 N -0.644 5.644 14 C 0.109 3.891 15 C 0.051 3.949 16 C -0.464 4.464 17 H 0.055 0.945 18 C 0.076 3.924 19 N -0.880 5.880 20 Si 0.883 3.117 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.220 4.220 25 C -0.158 4.158 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.334 0.666 36 H 0.071 0.929 37 H -0.009 1.009 38 H 0.255 0.745 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.588 0.458 5.638 12.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.102 0.898 4 C -0.105 4.105 5 C -0.088 4.088 6 C -0.136 4.136 7 C -0.144 4.144 8 C -0.141 4.141 9 C -0.105 4.105 10 C -0.062 4.062 11 C 0.016 3.984 12 H 0.057 0.943 13 N -0.275 5.275 14 C -0.019 4.019 15 C 0.050 3.950 16 C -0.502 4.502 17 H 0.073 0.927 18 C -0.126 4.126 19 N -0.518 5.518 20 Si 0.712 3.288 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.257 4.257 25 C -0.196 4.196 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.153 0.847 36 H 0.089 0.911 37 H 0.009 0.991 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.160 -0.244 5.852 12.603 hybrid contribution 0.442 0.227 0.026 0.498 sum -10.718 -0.017 5.878 12.224 Atomic orbital electron populations 1.21760 0.94688 1.01878 1.01396 1.21985 0.95224 0.99173 0.94921 0.89751 1.21006 1.01203 0.91215 0.97082 1.20471 0.99440 0.94464 0.94447 1.20466 1.02337 0.91736 0.99027 1.20879 1.01742 0.97412 0.94386 1.20926 1.01194 0.97736 0.94253 1.20611 0.98605 0.91586 0.99683 1.20394 0.97749 0.94174 0.93873 1.20979 0.91250 0.90803 0.95321 0.94267 1.60176 1.27831 1.16127 1.23345 1.21537 0.94725 1.00427 0.85259 1.18870 0.93083 0.93392 0.89661 1.20058 1.15749 0.99117 1.15252 0.92721 1.24812 0.96924 0.95569 0.95335 1.69988 1.39379 1.01565 1.40828 0.86813 0.83181 0.76657 0.82153 1.20335 1.21691 1.20723 1.23096 1.00158 0.92298 1.10159 1.22472 1.00290 0.97261 0.99554 0.92542 0.92567 0.92726 0.91560 0.89858 0.87062 0.86687 0.86539 0.86748 0.84729 0.91095 0.99081 0.93542 0.92215 0.90618 0.90096 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.10 37.16 0.34 -1.25 16 2 C -0.09 -1.30 3.33 -89.22 -0.30 -1.59 16 3 H 0.08 1.10 7.58 -51.93 -0.39 0.71 16 4 C -0.07 -0.98 6.31 -26.85 -0.17 -1.15 16 5 C -0.09 -1.48 6.14 -104.21 -0.64 -2.12 16 6 C -0.12 -1.85 10.04 -39.54 -0.40 -2.25 16 7 C -0.13 -1.96 10.05 -39.63 -0.40 -2.36 16 8 C -0.12 -2.06 10.05 -39.62 -0.40 -2.46 16 9 C -0.09 -1.60 9.54 -39.53 -0.38 -1.98 16 10 C -0.06 -1.12 5.64 -104.21 -0.59 -1.70 16 11 C 0.13 2.16 2.73 -67.84 -0.18 1.98 16 12 H 0.04 0.66 7.67 -51.93 -0.40 0.27 16 13 N -0.64 -12.99 5.63 -106.86 -0.60 -13.59 16 14 C 0.11 2.43 5.57 -3.83 -0.02 2.41 16 15 C 0.05 1.23 1.73 -155.66 -0.27 0.96 16 16 C -0.46 -12.61 8.15 -34.44 -0.28 -12.89 16 17 H 0.05 1.51 7.82 -52.49 -0.41 1.09 16 18 C 0.08 2.12 5.39 -17.82 -0.10 2.02 16 19 N -0.88 -25.33 12.91 55.43 0.72 -24.61 16 20 Si 0.88 22.06 29.54 -169.99 -5.02 17.04 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 C -0.22 -4.80 9.88 -26.73 -0.26 -5.06 16 25 C -0.16 -3.74 9.43 -26.73 -0.25 -4.00 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.11 2.12 7.49 -52.49 -0.39 1.73 16 35 H 0.33 6.31 8.13 -39.29 -0.32 5.99 16 36 H 0.07 1.75 6.96 -51.93 -0.36 1.39 16 37 H -0.01 -0.18 7.93 -51.93 -0.41 -0.59 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 40 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 41 H 0.08 2.06 8.14 -51.93 -0.42 1.63 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -29.42 341.51 -10.94 -40.35 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.88 Total: 7.09 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -4.29 Total: -31.44 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.11 Total: -38.20 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.42 -10.94 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430741747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.158 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds