Wall clock time and date at job start Mon Mar 30 2020 02:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.88075 * 2 1 4 4 C 1.54349 * 110.82509 * 123.51511 * 2 1 3 5 5 C 1.51368 * 105.16740 * 91.87504 * 4 2 1 6 6 C 1.38495 * 130.38807 * 197.16271 * 5 4 2 7 7 C 1.38100 * 120.21477 * 180.02562 * 6 5 4 8 8 C 1.38253 * 119.93829 * 0.02562 * 7 6 5 9 9 C 1.38105 * 119.93172 * 359.97438 * 8 7 6 10 10 C 1.38217 * 109.76019 * 17.19580 * 5 4 2 11 11 C 1.51364 * 109.75796 * 359.97438 * 10 5 4 12 12 H 1.09004 * 110.30487 * 223.78993 * 11 10 5 13 13 N 1.46907 * 110.30237 * 101.74354 * 11 10 5 14 14 C 1.46897 * 111.00355 * 86.45266 * 13 11 10 15 15 C 1.52994 * 109.47020 * 183.05302 * 14 13 11 16 16 C 1.50701 * 115.55498 * 39.50963 * 15 14 13 17 17 H 1.07998 * 119.99982 * 265.57364 * 16 15 14 18 18 C 1.37875 * 119.99790 * 85.57047 * 16 15 14 19 19 N 1.31524 * 119.99957 * 353.64993 * 18 16 15 20 20 Si 1.86795 * 120.00065 * 173.65104 * 18 16 15 21 21 H 1.48509 * 109.47043 * 60.00284 * 20 18 16 22 22 H 1.48502 * 109.47266 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47490 * 300.00091 * 20 18 16 24 24 C 1.53003 * 117.49803 * 253.80373 * 15 14 13 25 25 C 1.53002 * 60.00142 * 252.51246 * 24 15 14 26 26 H 1.08998 * 109.46648 * 183.51407 * 1 2 3 27 27 H 1.08996 * 109.47293 * 303.51400 * 1 2 3 28 28 H 1.08995 * 109.47041 * 63.51519 * 1 2 3 29 29 H 1.09001 * 110.29975 * 332.95555 * 4 2 1 30 30 H 1.08999 * 110.30401 * 210.80361 * 4 2 1 31 31 H 1.07999 * 119.89392 * 0.06369 * 6 5 4 32 32 H 1.08005 * 120.03402 * 179.97438 * 7 6 5 33 33 H 1.07993 * 120.03631 * 180.02562 * 8 7 6 34 34 H 1.08001 * 119.89334 * 180.02562 * 9 8 7 35 35 H 1.00903 * 110.99883 * 210.41129 * 13 11 10 36 36 H 1.09000 * 109.46705 * 303.05223 * 14 13 11 37 37 H 1.08998 * 109.46997 * 63.04928 * 14 13 11 38 38 H 0.96999 * 119.99583 * 179.97438 * 19 18 16 39 39 H 1.09007 * 117.49476 * 0.02562 * 24 15 14 40 40 H 1.09004 * 117.50224 * 145.01894 * 24 15 14 41 41 H 1.08998 * 117.49675 * 252.50973 * 25 24 15 42 42 H 1.09000 * 117.51656 * 107.47785 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0787 -0.7966 1.2028 5 6 2.2642 -2.2090 0.6910 6 6 2.4212 -3.3999 1.3803 7 6 2.5774 -4.5864 0.6912 8 6 2.5778 -4.5864 -0.6913 9 6 2.4214 -3.3999 -1.3805 10 6 2.2643 -2.2089 -0.6912 11 6 2.0782 -0.7966 -1.2028 12 1 1.3629 -0.7834 -2.0252 13 7 3.3654 -0.2387 -1.6390 14 6 3.6483 -0.5968 -3.0353 15 6 5.0275 -0.0642 -3.4288 16 6 6.0946 -0.1783 -2.3708 17 1 6.2922 0.6537 -1.7112 18 6 6.8186 -1.3449 -2.2449 19 7 6.4961 -2.3996 -2.9616 20 14 8.2575 -1.4277 -1.0566 21 1 7.7776 -1.1528 0.3216 22 1 8.8646 -2.7819 -1.1079 23 1 9.2736 -0.4143 -1.4383 24 6 5.0770 1.1532 -4.3542 25 6 5.4586 -0.2291 -4.8876 26 1 -0.3632 -1.0257 0.0630 27 1 -0.3634 0.5674 0.8568 28 1 -0.3633 0.4583 -0.9198 29 1 1.3621 -0.7829 2.0240 30 1 3.0339 -0.3829 1.5263 31 1 2.4208 -3.4008 2.4603 32 1 2.7000 -5.5134 1.2317 33 1 2.6994 -5.5134 -1.2318 34 1 2.4214 -3.4007 -2.4605 35 1 3.3879 0.7618 -1.5105 36 1 3.6335 -1.6814 -3.1423 37 1 2.8905 -0.1573 -3.6838 38 1 7.0057 -3.2202 -2.8732 39 1 4.1269 1.5750 -4.6822 40 1 5.8814 1.8721 -4.1977 41 1 6.5140 -0.4197 -5.0821 42 1 4.7596 -0.7173 -5.5668 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430741747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:15 Heat of formation + Delta-G solvation = 33.249790 kcal Electronic energy + Delta-G solvation = -21267.323984 eV Core-core repulsion = 18404.748086 eV Total energy + Delta-G solvation = -2862.575898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21883 -38.67429 -37.39031 -34.51983 -33.80596 -31.73835 -31.32521 -28.09729 -27.47860 -27.05650 -24.72335 -22.91907 -22.80131 -21.60846 -21.25177 -20.56329 -17.87053 -17.19872 -16.74092 -16.39508 -16.13636 -16.10584 -15.78400 -15.12971 -14.94860 -14.45998 -14.16153 -14.08274 -13.64143 -13.51120 -13.33772 -13.20372 -12.99276 -12.83618 -12.61529 -12.40838 -12.12551 -11.98991 -11.94820 -11.80636 -11.67204 -11.51226 -11.19134 -10.72259 -10.29487 -9.86358 -9.62348 -9.36537 -8.92608 -7.96405 -5.99679 0.56996 0.58622 1.42007 1.43822 1.48770 2.50766 2.90403 3.35043 3.38959 3.53869 3.69878 3.71632 4.12928 4.16893 4.21264 4.25532 4.38704 4.44881 4.53310 4.60299 4.64655 4.73584 4.76092 4.79614 4.85056 4.94853 5.00746 5.04849 5.09429 5.12894 5.17872 5.27152 5.30310 5.42709 5.44144 5.62742 5.65532 5.68908 5.71299 5.88603 5.91821 6.22611 6.40808 6.60575 6.83993 7.00894 7.63877 9.12595 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.007541 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.862877 B = 3712.376703 C = 4502.208982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 H 0.094 0.906 4 C -0.065 4.065 5 C -0.100 4.100 6 C -0.123 4.123 7 C -0.127 4.127 8 C -0.137 4.137 9 C -0.115 4.115 10 C -0.088 4.088 11 C 0.125 3.875 12 H 0.037 0.963 13 N -0.658 5.658 14 C 0.126 3.874 15 C 0.024 3.976 16 C -0.465 4.465 17 H 0.047 0.953 18 C 0.030 3.970 19 N -0.905 5.905 20 Si 0.934 3.066 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.274 1.274 24 C -0.190 4.190 25 C -0.168 4.168 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.130 0.870 34 H 0.097 0.903 35 H 0.340 0.660 36 H 0.037 0.963 37 H 0.006 0.994 38 H 0.250 0.750 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.597 1.468 7.366 14.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.105 4.105 3 H 0.112 0.888 4 C -0.102 4.102 5 C -0.101 4.101 6 C -0.141 4.141 7 C -0.145 4.145 8 C -0.155 4.155 9 C -0.134 4.134 10 C -0.089 4.089 11 C 0.016 3.984 12 H 0.055 0.945 13 N -0.290 5.290 14 C -0.004 4.004 15 C 0.024 3.976 16 C -0.504 4.504 17 H 0.065 0.935 18 C -0.169 4.169 19 N -0.544 5.544 20 Si 0.761 3.239 21 H -0.204 1.204 22 H -0.219 1.219 23 H -0.200 1.200 24 C -0.227 4.227 25 C -0.206 4.206 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.148 0.852 34 H 0.115 0.885 35 H 0.160 0.840 36 H 0.056 0.944 37 H 0.024 0.976 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.170 0.786 7.583 14.361 hybrid contribution 0.750 -0.101 -0.521 0.919 sum -11.420 0.685 7.063 13.445 Atomic orbital electron populations 1.21717 0.92601 1.01920 1.02799 1.22000 0.96806 0.98877 0.92777 0.88813 1.21046 1.01496 0.89584 0.98082 1.20891 0.99030 0.96134 0.94000 1.20896 1.01220 0.91366 1.00633 1.21279 1.00435 0.98860 0.93905 1.21199 1.01226 0.97704 0.95326 1.20739 1.00464 0.93015 0.99199 1.20655 0.98770 0.94449 0.95003 1.21089 0.89822 0.90908 0.96606 0.94530 1.60045 1.30240 1.16658 1.22013 1.21197 0.93955 0.98241 0.86964 1.19002 0.93567 0.95803 0.89275 1.20287 1.16177 0.98512 1.15403 0.93476 1.25412 0.99053 0.95583 0.96866 1.70109 1.40240 1.01756 1.42337 0.86005 0.80973 0.76498 0.80378 1.20383 1.21916 1.19974 1.23078 1.01341 0.91072 1.07215 1.22383 0.99094 0.99435 0.99667 0.93295 0.90160 0.92207 0.88646 0.90909 0.84165 0.83622 0.85193 0.88489 0.84019 0.94428 0.97588 0.94117 0.89317 0.90479 0.92522 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.10 71.98 0.66 -2.01 16 2 C -0.09 -2.19 3.33 -9.88 -0.03 -2.22 16 3 H 0.09 2.22 7.58 -2.38 -0.02 2.20 16 4 C -0.07 -1.74 6.31 30.52 0.19 -1.54 16 5 C -0.10 -3.26 6.14 -19.60 -0.12 -3.38 16 6 C -0.12 -3.65 10.04 22.30 0.22 -3.42 16 7 C -0.13 -3.75 10.05 22.24 0.22 -3.53 16 8 C -0.14 -4.60 10.05 22.24 0.22 -4.38 16 9 C -0.12 -4.45 9.54 22.30 0.21 -4.24 16 10 C -0.09 -3.25 5.64 -19.60 -0.11 -3.36 16 11 C 0.13 4.24 2.73 44.83 0.12 4.36 16 12 H 0.04 1.24 7.67 -2.39 -0.02 1.22 16 13 N -0.66 -26.44 5.63 -492.00 -2.77 -29.20 16 14 C 0.13 5.63 5.57 86.30 0.48 6.11 16 15 C 0.02 1.18 1.73 -52.93 -0.09 1.09 16 16 C -0.47 -25.43 8.15 25.60 0.21 -25.22 16 17 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 18 C 0.03 1.70 5.39 84.65 0.46 2.15 16 19 N -0.91 -53.39 12.91 21.45 0.28 -53.11 16 20 Si 0.93 45.62 29.54 68.60 2.03 47.65 16 21 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 23 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 24 C -0.19 -8.00 9.88 30.60 0.30 -7.70 16 25 C -0.17 -7.99 9.43 30.60 0.29 -7.70 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 1.96 7.91 -2.39 -0.02 1.94 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.10 3.91 7.49 -2.91 -0.02 3.89 16 35 H 0.34 12.56 8.13 -89.69 -0.73 11.83 16 36 H 0.04 1.92 6.96 -2.39 -0.02 1.91 16 37 H 0.01 0.26 7.93 -2.39 -0.02 0.24 16 38 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 39 H 0.09 3.23 8.08 -2.38 -0.02 3.21 16 40 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -63.71 341.51 3.03 -60.68 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.26 Total: 28.98 kcal Atomic # 6 Polarization: -58.22 SS G_CDS: 3.23 Total: -54.99 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.49 Total: -82.32 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -63.71 3.03 -60.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430741747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.929 kcal (2) G-P(sol) polarization free energy of solvation -63.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds