Wall clock time and date at job start Mon Mar 30 2020 02:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.73272 * 2 1 4 4 C 1.54350 * 110.99378 * 123.52375 * 2 1 3 5 5 C 1.51371 * 105.17237 * 144.64727 * 4 2 1 6 6 C 1.38498 * 130.39228 * 162.77446 * 5 4 2 7 7 C 1.38104 * 120.21438 * 180.02562 * 6 5 4 8 8 C 1.38247 * 119.93486 * 359.97438 * 7 6 5 9 9 C 1.38106 * 119.93928 * 359.97438 * 8 7 6 10 10 C 1.38211 * 109.75979 * 342.81876 * 5 4 2 11 11 C 1.51377 * 109.76086 * 359.97438 * 10 5 4 12 12 H 1.08991 * 110.30825 * 136.21415 * 11 10 5 13 13 N 1.46901 * 110.30521 * 258.27593 * 11 10 5 14 14 C 1.46897 * 110.99593 * 280.20090 * 13 11 10 15 15 C 1.52995 * 109.47240 * 185.32572 * 14 13 11 16 16 C 1.50703 * 115.55188 * 281.17571 * 15 14 13 17 17 H 1.07995 * 120.00156 * 144.18887 * 16 15 14 18 18 C 1.37882 * 119.99578 * 324.19290 * 16 15 14 19 19 N 1.31512 * 120.00138 * 337.24191 * 18 16 15 20 20 Si 1.86805 * 119.99628 * 157.24002 * 18 16 15 21 21 H 1.48502 * 109.46905 * 60.00077 * 20 18 16 22 22 H 1.48501 * 109.46978 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47249 * 300.00304 * 20 18 16 24 24 C 1.53002 * 117.50181 * 135.46859 * 15 14 13 25 25 C 1.52998 * 117.50183 * 66.84350 * 15 14 13 26 26 H 1.09001 * 109.46791 * 189.89580 * 1 2 3 27 27 H 1.09004 * 109.47170 * 309.89266 * 1 2 3 28 28 H 1.08996 * 109.47164 * 69.89382 * 1 2 3 29 29 H 1.09004 * 110.29843 * 25.72540 * 4 2 1 30 30 H 1.09001 * 110.30450 * 263.57719 * 4 2 1 31 31 H 1.07999 * 119.89435 * 0.05235 * 6 5 4 32 32 H 1.07994 * 120.02975 * 179.70703 * 7 6 5 33 33 H 1.08005 * 120.03577 * 180.02562 * 8 7 6 34 34 H 1.07993 * 119.89887 * 179.97438 * 9 8 7 35 35 H 1.00899 * 111.00509 * 156.24480 * 13 11 10 36 36 H 1.09005 * 109.47116 * 305.32201 * 14 13 11 37 37 H 1.09002 * 109.47504 * 65.32148 * 14 13 11 38 38 H 0.97002 * 119.99869 * 185.06363 * 19 18 16 39 39 H 1.09001 * 117.49712 * 359.97438 * 24 15 14 40 40 H 1.08996 * 117.50067 * 145.02209 * 24 15 14 41 41 H 1.09003 * 117.50348 * 214.98184 * 25 15 14 42 42 H 1.09002 * 117.49482 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9159 1.0194 0.0000 4 6 2.0830 -0.7959 1.2013 5 6 3.3374 -1.4691 0.6870 6 6 4.3974 -2.0368 1.3740 7 6 5.4509 -2.6019 0.6826 8 6 5.4480 -2.6018 -0.6999 9 6 4.3914 -2.0371 -1.3869 10 6 3.3350 -1.4681 -0.6952 11 6 2.0785 -0.7947 -1.2043 12 1 2.3173 -0.1204 -2.0266 13 7 1.1010 -1.8014 -1.6392 14 6 1.4272 -2.3074 -2.9791 15 6 0.3194 -3.2510 -3.4516 16 6 0.3646 -4.6445 -2.8796 17 1 -0.5539 -5.1659 -2.6545 18 6 1.5789 -5.2536 -2.6435 19 7 2.6507 -4.8581 -3.2949 20 14 1.7014 -6.6407 -1.3983 21 1 0.8142 -7.7574 -1.8123 22 1 3.1046 -7.1219 -1.3298 23 1 1.2828 -6.1452 -0.0625 24 6 -0.1771 -3.0932 -4.8902 25 6 -1.0582 -2.6432 -3.7231 26 1 -0.3633 -1.0124 0.1766 27 1 -0.3634 0.6591 0.7885 28 1 -0.3633 0.3533 -0.9650 29 1 1.3586 -1.5430 1.5257 30 1 2.3252 -0.1214 2.0226 31 1 4.4000 -2.0381 2.4540 32 1 6.2783 -3.0396 1.2213 33 1 6.2709 -3.0436 -1.2423 34 1 4.3900 -2.0370 -2.4668 35 1 0.1630 -1.4306 -1.6111 36 1 1.5121 -1.4708 -3.6727 37 1 2.3735 -2.8471 -2.9433 38 1 3.4888 -5.3337 -3.1838 39 1 0.2851 -2.3169 -5.4999 40 1 -0.4711 -3.9974 -5.4232 41 1 -1.9318 -3.2514 -3.4883 42 1 -1.1752 -1.5710 -3.5654 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430741750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:18 Heat of formation + Delta-G solvation = 54.053470 kcal Electronic energy + Delta-G solvation = -21556.556441 eV Core-core repulsion = 18694.882658 eV Total energy + Delta-G solvation = -2861.673783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96125 -37.10803 -36.05728 -32.71410 -32.06254 -30.58170 -30.25098 -26.48163 -25.86996 -25.37430 -23.50207 -21.49402 -21.09810 -20.43391 -19.25056 -18.86779 -16.36296 -15.86198 -15.58668 -15.09211 -14.59503 -14.43221 -14.22709 -13.52317 -13.21704 -13.07963 -12.93097 -12.67758 -12.43197 -12.09423 -11.68165 -11.60557 -11.26395 -10.94263 -10.91425 -10.75824 -10.71883 -10.48042 -10.45675 -10.33537 -10.25584 -10.06450 -9.14577 -9.10384 -8.63158 -8.32025 -8.09835 -7.89352 -7.38067 -5.99207 -3.89783 1.84269 1.89103 3.37857 3.44126 3.51215 4.21561 4.49202 4.63725 4.92018 4.95977 5.12037 5.27296 5.34908 5.43841 5.47257 5.63926 5.70997 5.73468 5.78774 5.90421 6.01203 6.06221 6.14424 6.17501 6.19885 6.28023 6.41460 6.46503 6.53877 6.60963 6.65705 6.70213 6.77151 6.88493 6.98842 6.99418 7.14009 7.19628 7.37632 7.48230 7.73614 8.07842 8.11201 8.34198 8.60127 8.99792 9.65160 11.05478 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.009020 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.951268 B = 3103.573717 C = 4191.172831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.076 0.924 4 C -0.067 4.067 5 C -0.090 4.090 6 C -0.119 4.119 7 C -0.126 4.126 8 C -0.124 4.124 9 C -0.081 4.081 10 C -0.066 4.066 11 C 0.127 3.873 12 H 0.037 0.963 13 N -0.660 5.660 14 C 0.085 3.915 15 C 0.067 3.933 16 C -0.486 4.486 17 H 0.057 0.943 18 C 0.088 3.912 19 N -0.867 5.867 20 Si 0.882 3.118 21 H -0.281 1.281 22 H -0.289 1.289 23 H -0.274 1.274 24 C -0.205 4.205 25 C -0.216 4.216 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.333 0.667 36 H -0.013 1.013 37 H 0.126 0.874 38 H 0.261 0.739 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 9.380 7.057 11.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.094 0.906 4 C -0.104 4.104 5 C -0.090 4.090 6 C -0.137 4.137 7 C -0.144 4.144 8 C -0.142 4.142 9 C -0.100 4.100 10 C -0.067 4.067 11 C 0.017 3.983 12 H 0.055 0.945 13 N -0.294 5.294 14 C -0.043 4.043 15 C 0.066 3.934 16 C -0.523 4.523 17 H 0.075 0.925 18 C -0.116 4.116 19 N -0.503 5.503 20 Si 0.710 3.290 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.199 1.199 24 C -0.244 4.244 25 C -0.253 4.253 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.154 0.846 36 H 0.005 0.995 37 H 0.143 0.857 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.919 8.870 7.401 11.915 hybrid contribution -0.166 -0.167 -0.108 0.260 sum 2.753 8.702 7.293 11.683 Atomic orbital electron populations 1.21766 0.94325 1.02989 1.01238 1.21924 0.96118 0.98085 0.94823 0.90593 1.21033 0.94253 0.98079 0.97076 1.20491 0.95222 0.98841 0.94492 1.20461 0.94024 1.00215 0.99023 1.20895 0.98469 1.00622 0.94415 1.20952 0.98787 1.00274 0.94212 1.20679 0.92837 0.96450 1.00023 1.20401 0.94325 0.98081 0.93855 1.20889 0.90641 0.91375 0.95413 0.94543 1.60485 1.03865 1.35859 1.29147 1.21911 1.03636 0.93995 0.84730 1.18904 0.88004 0.94773 0.91670 1.20272 0.92158 0.97926 1.41927 0.92526 1.24765 0.95548 0.96552 0.94740 1.69861 1.01443 1.40194 1.38807 0.86825 0.76768 0.81868 0.83533 1.20697 1.21509 1.19935 1.22990 1.06802 1.00896 0.93714 1.22832 0.97313 0.97898 1.07295 0.90691 0.92769 0.92709 0.89813 0.91700 0.87040 0.86676 0.86463 0.86288 0.84591 0.99469 0.85663 0.92936 0.92149 0.90450 0.90728 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 7.91 37.16 0.29 -1.57 16 2 C -0.09 -1.28 3.63 -89.20 -0.32 -1.61 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.07 -0.98 6.32 -26.85 -0.17 -1.15 16 5 C -0.09 -1.53 6.14 -104.21 -0.64 -2.17 16 6 C -0.12 -1.89 10.04 -39.53 -0.40 -2.28 16 7 C -0.13 -1.97 10.05 -39.63 -0.40 -2.37 16 8 C -0.12 -2.11 10.05 -39.63 -0.40 -2.51 16 9 C -0.08 -1.54 9.28 -39.53 -0.37 -1.91 16 10 C -0.07 -1.23 5.51 -104.20 -0.57 -1.81 16 11 C 0.13 2.25 3.07 -67.82 -0.21 2.04 16 12 H 0.04 0.65 7.89 -51.93 -0.41 0.24 16 13 N -0.66 -13.48 6.05 -106.84 -0.65 -14.12 16 14 C 0.09 1.98 5.20 -3.83 -0.02 1.96 16 15 C 0.07 1.67 1.90 -155.66 -0.30 1.37 16 16 C -0.49 -13.39 8.97 -34.44 -0.31 -13.70 16 17 H 0.06 1.58 7.91 -52.49 -0.42 1.17 16 18 C 0.09 2.41 5.02 -17.82 -0.09 2.32 16 19 N -0.87 -23.93 11.19 55.43 0.62 -23.31 16 20 Si 0.88 21.81 29.60 -169.99 -5.03 16.78 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.21 -4.77 9.88 -26.73 -0.26 -5.03 16 25 C -0.22 -4.70 9.46 -26.73 -0.25 -4.95 16 26 H 0.07 1.07 7.10 -51.93 -0.37 0.70 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.69 7.65 -51.93 -0.40 0.29 16 29 H 0.08 1.27 7.74 -51.93 -0.40 0.87 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 34 H 0.12 2.32 7.61 -52.49 -0.40 1.92 16 35 H 0.33 6.32 5.25 -39.29 -0.21 6.11 16 36 H -0.01 -0.29 7.80 -51.93 -0.41 -0.70 16 37 H 0.13 3.22 4.13 -51.93 -0.21 3.01 16 38 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 39 H 0.06 1.32 8.09 -51.93 -0.42 0.90 16 40 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 41 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 42 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -28.65 333.04 -11.03 -39.67 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.58 Total: 9.33 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: -4.41 Total: -33.37 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.03 Total: -37.43 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.65 -11.03 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430741750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.726 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds